BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74380.1
Length=1877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476571 jgi|Araly1|476571|fgenesh2_kg.2__1701__AT1G74380.1 2745 0.0
Ahg312817 jgi|Araly1|312817|fgenesh1_pm.C_scaffold_1001597 1101 0.0
Ahg487607 jgi|Araly1|487607|fgenesh2_kg.6__741__AT5G07720.1 1005 0.0
> Ahg476571 jgi|Araly1|476571|fgenesh2_kg.2__1701__AT1G74380.1
Length=1838
Score = 2745 bits (1486), Expect = 0.0
Identities = 1623/1688 (96%), Gaps = 13/1688 (1%)
Strand=Plus/Plus
Query 195 ACTGATCTGAGGAAAACAAAGTTGATGGTCGCAAACCTGTAAGTGAAATCTATAGAGAGA 254
|||||||||||| |||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 159 ACTGATCTGAGG-AAACAAAGTTGATGGTCGCAAACCTGTAAGTGAAAT-T-TATAGAGA 215
Query 255 GACGTTGAAGAAGAAAATGGGTCAAGATGGTTCGCCGGCGCATAAAAGACCATCCGGAAG 314
||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 216 GACATTGGAGGAGAAAATGGGTCAAGATGGTTCGCCGGCGCATAAAAGACCTTCCGGAAG 275
Query 315 CGGCGGAGGACTTCCGACGACGACGT-TAACCAACGGTGGAGGAAGAGGTGGTCGTGGTG 373
|||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 276 CGGCGGAGGACTTCCGACGACGAC-TGTAACGAACGGTGGAGGAAGAGGTGGTCGTGGTG 334
Query 374 GTTTGTTACCTCGAGGTAGACAGATGCAGAAGACGTTTAACAACATCAAGATCACAATTC 433
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 335 GTTTGTTGCCTCGAGGTAGACAGATGCAGAAGACATTTAACAACATCAAGATCACGATTC 394
Query 434 TCTGTGGTTTCGTCACAATTCTCGTCTTACGTGGCACTATCGGTGTTGGTAACCTAGGAA 493
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 395 TCTGTGGTTTCGTCACAATCCTCGTCTTACGTGGCACTATCGGTGTTGGTAACCTCGGAA 454
Query 494 GCTCAAGCGCCGATGCAGTTAACCAGAACATCATTGAGGAGACTAACCGGATTCTAGCTG 553
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 455 GCTCAAGCGCCGATGCGGTTAACCAGAACATCATCGAGGAGACTAACCGGATTCTAGCTG 514
Query 554 AGATCCGATCTGATTCGGATCCAACCGACTTGGATGAGCCTCAGGAAGGTGATATGAATC 613
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 515 AGATCCGATCTGATTCGGATCCAACTGACTTGGATGAGCCTCAGGAAGGTGATATGAATC 574
Query 614 CCAATGCGACGTATGTTCTAGGTCCTAAGATCACGGATTGGGATAGTCAACGTAAGGTAT 673
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 575 CCAATGCGACGTATGTTCTTGGGCCTAAGATCACGGATTGGGATAGTCAACGTAAGGTAT 634
Query 674 GGTTGAATCAGAATCCTGAGTTTCCTAGTACTGTCAATGGCAAAGCTCGAATCTTGCTTT 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 GGTTGAATCAGAATCCTGAGTTTCCTAGTACTGTCAATGGCAAAGCTCGAATCTTGCTTT 694
Query 734 TAACAGGATCTCCTCCTAAGCCTTGTGATAACCCCATTGGTGATCATTATCTTTTGAAAT 793
|||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 695 TAACAGGATCTCCTCCGAAGCCTTGCGATAACCCGATTGGTGATCATTATCTGTTGAAAT 754
Query 794 CTGTGAAGAACAAGATTGATTATTGTAGGCTTCATGGAATTGAGATTGTGTATAACATGG 853
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 755 CTGTAAAGAACAAGATTGATTATTGTAGGCTTCATGGGATTGAGATTGTGTATAACATGG 814
Query 854 CTCATTTGGATAAGGAACTCGCTGGCTATTGGGCAAAATTACCAATGATTAGGAGGTTGA 913
||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||
Sbjct 815 CTCATTTGGATAAGGAACTCGCTGGGTATTGGGCGAAATTGCCGATGATTAGGAGGTTGA 874
Query 914 TGTTGTCTCATCCAGAAGTTGAGTGGATCTGGTGGATGGATAGTGATGCTTTGTTCACTG 973
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 TGCTCTCTCATCCAGAAGTTGAGTGGATCTGGTGGATGGATAGTGATGCTTTGTTCACTG 934
Query 974 ATATACTGTTTCAGATCCCTTTGGCTAGGTATCAGAAGCATAATCTAGTGATTCATGGTT 1033
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||
Sbjct 935 ATATACTGTTTCAGATCCCTTTGGCTAGGTATGAGAAGCATAATCTCGTGATTCACGGTT 994
Query 1034 ATCCGGACTTGTTGTTCGATCAGAAGTCGTGGATTGCTTTGAACACAGGTAGTTTTCTGC 1093
||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 995 ATCCGGACTTGCTGTTTGATCAGAAGTCGTGGATTGCTTTGAACACTGGTAGTTTTCTGC 1054
Query 1094 TGAGGAATTGTCAGTGGTCGTTGGATTTGTTAGATGCTTGGGCGCCTATGGGACCTAAAG 1153
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1055 TGAGGAATTGTCAGTGGTCGTTGGATTTGTTAGATGCTTGGGCGCCAATGGGACCTAAAG 1114
Query 1154 GGCCAATTCGTGATGAGGCCGGGAAGGTATTGACGGCTTATCTGAAAGGTAGACCAGCTT 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 GGCCAATTCGTGATGAGGCCGGGAAGGTATTGACGGCTTATCTGAAAGGTAGACCAGCTT 1174
Query 1214 TTGAGGCAGATGATCAGTCAGCATTGATCTATCTCCTGCTTTCTCAGAAAGATACATGGA 1273
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1175 TTGAGGCAGATGATCAGTCAGCGTTGATCTATCTCCTGCTTTCTCAGAAAGATACATGGA 1234
Query 1274 TGGAGAAAGTGTTTGTGGAGAATCAATACTATTTGCACGGGTTTTGGGAAGGTTTGGTTG 1333
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1235 TGGAGAAAGTGTTTGTGGAGAATCAATACTATTTACACGGGTTTTGGGAAGGTTTGGTTG 1294
Query 1334 ATAGGTATGAGGAGATGATAGAGAAGTATCACCCGGGATTGGGTGATGAGAGATGGCCAT 1393
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1295 ATAGATATGAGGAGATGATAGAGAAGTATCACCCGGGATTGGGTGATGAGAGATGGCCGT 1354
Query 1394 TTGTGACCCATTTCGTTGGGTGTAAACCGTGTGGTAGCTATGCTGATTATGCAGTCGAGA 1453
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1355 TTGTGACCCATTTCGTTGGGTGTAAACCATGTGGTAGCTATGCTGATTATGCAGTCGAGA 1414
Query 1454 GGTGCTTGAAGAGTATGGAGAGGGCCTTTAATTTTGCAGACAATCAAGTGCTCAAGCTGT 1513
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1415 GGTGCTTGAAGAGCATGGAGAGGGCCTTCAATTTTGCAGACAATCAAGTTCTCAAGCTGT 1474
Query 1514 ATGGTTTTAGCCATAGGGGATTGTTGAGCCCCAAGATTAAGAGGATCAGAAATGAGACAG 1573
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 ATGGTTTTGGCCATAGGGGATTGTTGAGCCCCAAGATTAAGAGGATCAGAAATGAGACAG 1534
Query 1574 TCTCTCCTTTGGAGTTTGTAGACAAGTTTGATATTCGCAGAACGCCAGTGGAAACCAAAC 1633
|| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1535 TCACTCCTTTGGAGTTTGTAGACAAGTTTGATATTCGCAGAACGCAAGTGGAACCCAAAC 1594
Query 1634 CACAGAACTAGAGGAACACAAGGAGAGGATAGGCTCAGCTCTCATGAGAT-TGTGG-ACA 1691
|||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 1595 CACAGAACTAGAGGAAAACAAGGAGAGGATAGGCTCAGCTCTCATGAGATCT-TGGGACA 1653
Query 1692 CGTATAGGTAAATTATATGACACTCACAAATGCAAAGCAAATTTGTTTGCCTGTACTTGC 1751
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1654 CGTATAGGTAAAATATATGACACTCACAAATGCAAAGCAAATTTGTTTGCCTGTACTTGC 1713
Query 1752 TACTTTACTGTTTCTTCTGCTTCTCttttttttgtttgttgttgttg-caagaatatttt 1810
|||||||||||||||||||| |||||||||| |||||||||||||| |||||||||| |
Sbjct 1714 TACTTTACTGTTTCTTCTGC--CTCTTTTTTT-GTTTGTTGTTGTTGGCAAGAATATTCT 1770
Query 1811 agatgcaaa-ttctttttccatagatgtttttgTGTTTTCTTCAGTCAAATATATGGAGA 1869
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 AGCGGCAAAATTCTTTTTCCATAGATGTTTTTGTGTTTTCTTCAGTCAAATATATGGAGA 1830
Query 1870 AATTTCAT 1877
||||||||
Sbjct 1831 AATTTCAT 1838
Score = 187 bits (101), Expect = 2e-46
Identities = 150/170 (88%), Gaps = 18/170 (11%)
Strand=Plus/Plus
Query 1 TTTTCCTCCGACAATATAT-TTTTAAGTAATGACAATGTTTCCGCATTATTGGGTTTAAT 59
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 TTTTCCTCCGACAATATATGTTTTAAGTAATGACAATGTCTCCGCATTATTGGGTTTAAT 60
Query 60 TCCATTTTTAAATTAGGGTTCTTC---AGATCGACAAATCTTTCTCTTTCTCTTTCCCCG 116
|||||||||||||||||||||||| |||||||||||||||||||| |||| | |
Sbjct 61 TCCATTTTTAAATTAGGGTTCTTCTTCAGATCGACAAATCTTTCTCT--CTCT--C---G 113
Query 117 ATCGGAATCATGCTAAAGATCTGAACTTT-TTCT--CAGATCCGTGAATA 163
| |||||||||||||||||||||||| || | ||||||||||||||
Sbjct 114 ---G-AATCATGCTAAAGATCTGAACTTTATTTTTTCAGATCCGTGAATA 159
> Ahg312817 jgi|Araly1|312817|fgenesh1_pm.C_scaffold_1001597
Length=1725
Score = 1101 bits (596), Expect = 0.0
Identities = 908/1061 (86%), Gaps = 12/1061 (1%)
Strand=Plus/Plus
Query 581 ACTTGGATGAGCCTCAGGAAGGTGATATGAATCCCAATGCGACGTATGTTCTAGGTCCTA 640
||||| ||||||| | ||| ||| | | |||||||||| |||| |||||| || |
Sbjct 668 ACTTGAATGAGCCGCCTAAAGCTGAGGTTAGTCCCAATGCGGCGTACACTCTAGGGCCCA 727
Query 641 AGATCACGGATTGGGATAGTCAACGTAAGGTATGGTTGAATCAGAATCCTGAGTTTCCTA 700
| ||||| | |||||||||||||| ||||||||| |||||||||| |||||||||||||
Sbjct 728 AAATCACCAACTGGGATAGTCAACGCAAGGTATGGCTGAATCAGAACCCTGAGTTTCCTA 787
Query 701 GTACTGTCAATGGCAAAGCTCGAATCTTGCTTTTAACAGGATC-TCCTCCTAAG-CCTTG 758
||| ||||||||||||||||| ||| |||||| | || || || ||| || | || ||
Sbjct 788 GTATTGTCAATGGCAAAGCTCAAATATTGCTTCTCACTGGGTCTTCC-CC-GGGACCCTG 845
Query 759 TGATAACCCCATTGGTGATC-ATTATCTTTTGAAATCTGTGAAGAACAAGATTGATTATT 817
||||| || ||||| || | ||||||| ||||| || ||||||||||||||||||||||
Sbjct 846 CGATAAACCAATTGGAGA-CTATTATCTATTGAAGTCCGTGAAGAACAAGATTGATTATT 904
Query 818 GTAGGCTTCATGGAATTGAGATTGTGTATAACATGGCTCATTTGGATAAGGAACTCGCTG 877
|||| || || || || |||||||||||||||||||| ||||||||| |||||||| | |
Sbjct 905 GTAGACTCCACGGGATAGAGATTGTGTATAACATGGCGCATTTGGATGAGGAACTCTCAG 964
Query 878 GCTATTGGGCAAAATTACCAATGATTAGGAGGTTGATGTTGTCTCATCCAGAAGTTGAGT 937
| |||||| | |||||||| |||||||||| || ||| |||||||||||||||| || |
Sbjct 965 GGTATTGGACGAAATTACCTATGATTAGGACATTAATGCTGTCTCATCCAGAAGTAGAAT 1024
Query 938 GGATCTGGTGGATGGATAGTGATGCTTTGTTCACTGATATACTGTTTCAGATCCCTTTGG 997
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1025 GGATTTGGTGGATGGATAGTGATGCTTTGTTCACTGATATACTGTTTGAGATCCCGTTAC 1084
Query 998 CTAGGTATCAGAAGCATAATCTAGTGATTCATGGTTATCCGGACTTGTTGTTCGATCAGA 1057
|| ||||| | || |||||||| ||||| || ||||||||||||||| ||||| | || |
Sbjct 1085 CTCGGTATGAAAATCATAATCTGGTGATACACGGTTATCCGGACTTGCTGTTCAACCAAA 1144
Query 1058 AGTCGTGGATTGCTTTGAACACAGGTAGT-TTTCTGCTGAGGAATTGTCAGTGGTCGTTG 1116
|||| |||||||| || ||||| |||| | |||||| |||| |||||||||||||||||
Sbjct 1145 AGTCTTGGATTGCATTAAACACGGGTA-TCTTTCTGTTGAGAAATTGTCAGTGGTCGTTA 1203
Query 1117 GATTTGTTAGATGCTTGGGCGCCTATGGGACCTAAAGGGCCAATTCGTGATGAGGCCGGG 1176
||||| |||||||||||||| || |||||||| |||||| | || ||||| || || |||
Sbjct 1204 GATTTATTAGATGCTTGGGCCCCAATGGGACCAAAAGGGACGATCCGTGACGAAGCTGGG 1263
Query 1177 AAGGTATTGACGGCTTATCTGAAAGGTAGACCAGCTTTTGAGGCAGATGATCAGTCAGCA 1236
||| || |||| ||| |||||||||| || ||||| |||||||| |||||||| || ||
Sbjct 1264 AAGATACTGACAGCTAATCTGAAAGGCAGGCCAGCATTTGAGGCTGATGATCAATCGGCG 1323
Query 1237 TTGATCTATCTCCTGCTTTCTCAGAAAGATACATGGATGGAGAAAGTGTT-TGTGGAGAA 1295
||||| |||||| ||||||| ||||| |||| |||||| |||||||| || |||||||||
Sbjct 1324 TTGATATATCTCTTGCTTTCGCAGAAGGATAAATGGATAGAGAAAGT-TTATGTGGAGAA 1382
Query 1296 TCAATACTATTTGCACGGGTTTTGGGAAGGTTTGGTTGATAGGTATGAGGAGATGATAGA 1355
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1383 TCAATACTACTTGCACGGGTTTTGGGAAGGTTTGGTTGATAGGTATGAAGAGATGATAGA 1442
Query 1356 GAAGTATCACCCGGGATTGGGTGATGAGAGATGGCCATTTGTGACCCATTTCGTTGGGTG 1415
|||||||| || |||||||| |||||||||||||| |||||||| ||||| || |||||
Sbjct 1443 AAAGTATCATCCAGGATTGGGAGATGAGAGATGGCCCTTTGTGACACATTTTGTGGGGTG 1502
Query 1416 TAAACCGTGTGGTAGCTATGCTGATTATGCAGTCGAGAGGTGCTTGAAGAGTATGGAGAG 1475
||||||||||| || ||||||||||||||||| || || ||||| ||||| ||||||||
Sbjct 1503 CAAACCGTGTGGCAGGTATGCTGATTATGCAGTGGATAGATGCTTCAAGAGCATGGAGAG 1562
Query 1476 GGCCTTTAATTTTGCAGACAATCAAGTGCTCAAGCTGTATGGTTTTAGCCATAGGGGATT 1535
||| |||||||||||||| |||||||||| ||||||||||| |||||||| ||||||||
Sbjct 1563 GGCTTTTAATTTTGCAGATGATCAAGTGCTTAAGCTGTATGGGTTTAGCCACAGGGGATT 1622
Query 1536 GTTGAGCCCCAAGATTAAGAGGATCAGAAATGAGACAGTCTCTCCTTTGGAGTTTGTAGA 1595
||||||||||||| |||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct 1623 GTTGAGCCCCAAGGTTAAGAGGATCAGAAACGAGACAGTTTCTCCTTTGGAGTCAGTAGA 1682
Query 1596 CAAGTTTGATATTCGCAGAACGC-CAGTGGAAACCAAACCA 1635
|||||||||||| || |||| || | |||||||||||||||
Sbjct 1683 CAAGTTTGATATGCGAAGAATGCGC-GTGGAAACCAAACCA 1722
> Ahg487607 jgi|Araly1|487607|fgenesh2_kg.6__741__AT5G07720.1
Length=1604
Score = 1005 bits (544), Expect = 0.0
Identities = 1026/1256 (82%), Gaps = 43/1256 (3%)
Strand=Plus/Plus
Query 381 ACCTCGAGGTAGACAGATGCAGAAGACGTTTAACAACATCAAGATCACAATTCTCTGTGG 440
||| || || |||||||| ||||| ||||| |||||| | || || ||||| || |||||
Sbjct 154 ACCACGTGGCAGACAGATCCAGAAAACGTTCAACAACGTAAAAATGACAATCCTTTGTGG 213
Query 441 TTTCGTCACAATTCTCGTCTTACGTGGCACTATCGGTGTTGGTAACCTAGGAAGC-TCAA 499
|||||||| |||||||||||||||||||||||||| | | |||| | |||| | ||
Sbjct 214 CTTCGTCACCATTCTCGTCTTACGTGGCACTATCGGCG-T--TAACTTCGGAA-CTTC-T 268
Query 500 G-CGCCGATG-CAGTTAACCAGAACATCATTGAGGAGACTAACCGGA-TTCTAGCTGAGA 556
| |||||| | | |||||||||||||| || || |||||||||| || ||||||||||||
Sbjct 269 GACGCCGACGTC-GTTAACCAGAACATAATCGAAGAGACTAACC-GACTTCTAGCTGAGA 326
Query 557 TCCGATCTGATTCGGATCCAACCGACTTGGATGAGCCTCAGGA-AGGTGAT-ATGAATCC 614
||||||| |||||||||| | |||| | ||||| | || | ||| || |||
Sbjct 327 TCCGATCCGATTCGGATCTTTCAGACTCAAACGAGCCACCTGATTCG-GATCTTG-ATCT 384
Query 615 CAATGCGACGTATGTTCTAGGTCCTAAGATCACGGATTGGGAT-AGTCAACGTAAGGTAT 673
||| |||||| ||| || || |||||||| | |||||| | ||||| || | |
Sbjct 385 CAACATGACGTACACTCTCGGACCCAAGATCACTAACTGGGATCA-ACAACGGAAACTTT 443
Query 674 GGTTGAA-TCAGAATCCTGAGTTT-CCTAGTACTGTCAATGGCAAAGCTCGAA--TCTTG 729
|||| || || || || || ||| || ||| ||||||||| |||||| || | |||
Sbjct 444 GGTT-AACGCAAAACCCAGA-TTTCCCCAGTTTTGTCAATGGTAAAGCT--AAGGTTTTG 499
Query 730 CTTTTAACAGGATCTCCTCCTAAGCCTTGTGATAACCCCATTGGTGATCATTATCTTTTG 789
||||||||||| || ||||| || |||||||| || || |||||||||||||| || |||
Sbjct 500 CTTTTAACAGGTTCGCCTCCAAAACCTTGTGACAATCCGATTGGTGATCATTACCTATTG 559
Query 790 AAATCTGTGAAGAACAAGATTGATTATTGTAGGCTTCATGGAATTGAGATTGTGTATAAC 849
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 560 AAATCGGTGAAGAACAAGATTGATTATTGTAGGATTCATGGAATTGAGATTGTGTATAAC 619
Query 850 ATGGCTCATTTGGATAAGGAACTCGCTGGCTATTGGGCAAAA-TTACCAATGATTAGGAG 908
|||||||||||||| ||||| || ||||| ||||||||||| || |||||||| |||||
Sbjct 620 ATGGCTCATTTGGACAAGGAGCTTGCTGGGTATTGGGCAAAGCTT-CCAATGATCAGGAG 678
Query 909 GTTGATGTTGTCTCATCCAGAAGTTGAGTGGATCTGGTGGATGGATAGTGATGCTTTGTT 968
|||||||||||||| || ||| |||| ||||| ||||||||||| ||||||||| ||||
Sbjct 679 ATTGATGTTGTCTCACCCTGAAATTGAATGGATTTGGTGGATGGACAGTGATGCTCTGTT 738
Query 969 CACTGATATACTGTTTCAGATCCCTTTGGCTAGGTATCAGAAGCATAATCTAG-TGATTC 1027
|||||| || ||||| |||| |||||| |||| ||| |||| ||||| || | | || |
Sbjct 739 CACTGACATGGTGTTTGAGATTCCTTTGTCTAGATATGAGAATCATAA-CTTGGTTATCC 797
Query 1028 ATGGTTATCCGGACTTGTTGTTCGATCAGAAGTCGTGGATTGCTTTGAACACAGGTAGTT 1087
|||| |||||||| |||||||| |||||||||||||||||||||||||| || ||||| |
Sbjct 798 ATGGATATCCGGATTTGTTGTTTGATCAGAAGTCGTGGATTGCTTTGAATACTGGTAGCT 857
Query 1088 TTCT-GCTGAGGAATTGTCAGTGGTCGTTGGATTTGTTAGATGCTTGGGCGCCTATGGGA 1146
| || | | ||||| ||||| ||||| ||||||||||| ||||||||||| || ||||||
Sbjct 858 T-CTTGTTTAGGAACTGTCAATGGTCTTTGGATTTGTTGGATGCTTGGGCTCCAATGGGA 916
Query 1147 CCTAAAGGGCCAATTCGTGATGAGGCCGGGAAGGTAT-TGACGGCTTATCTGAAAGGTAG 1205
|||||||| |||||||| || || ||||||||| | | | || || |||| ||||| ||
Sbjct 917 CCTAAAGGACCAATTCGGGAAGAAGCCGGGAAGAT-TCTCACTGCGAATCTTAAAGGAAG 975
Query 1206 ACCAGCTTTTGAGGCAGATGATCAGTCAGCATTGATCTATCTCCTGCTTTCTCAGAAAGA 1265
||| || || || || ||||||||||| |||||||||||||| ||||||| ||||| ||
Sbjct 976 ACCGGCGTTCGAAGCTGATGATCAGTCTGCATTGATCTATCTGTTGCTTTCGCAGAAGGA 1035
Query 1266 TACATGGATGGAGAAAGTGTTTGTGGAGAATCAATACTAT-TTGCACGGGTTTTGGGAAG 1324
|| |||||||||||||| |||||||||||||| |||||| || || |||||||||||||
Sbjct 1036 GACGTGGATGGAGAAAGTCTTTGTGGAGAATCAGTACTATCTT-CATGGGTTTTGGGAAG 1094
Query 1325 GTTTGGTTGATAGGTATGAGGAGATGATAGAGAAGTATCACCCGGGATTGGGTGATGAGA 1384
| || || |||||||||||||||||||||||||||||||| ||||||||||| || || |
Sbjct 1095 GATTAGTGGATAGGTATGAGGAGATGATAGAGAAGTATCATCCGGGATTGGGAGACGAAA 1154
Query 1385 GATGGCCATTTGTGACCCA-TTTCGTTGGGTGTAAACCGTGTGGTAGCTATGCTGATTAT 1443
||||||||||| | || || ||| ||||| |||||||||||||| || ||||| |||||
Sbjct 1155 GATGGCCATTTATTACTCACTTT-GTTGGATGTAAACCGTGTGGAAGTTATGCGGATTAC 1213
Query 1444 GCAGTCGAGAGGT-GCTTGAAGAGTATGGAGAGGGCCTTTAATTTTGCAGACAATCAAGT 1502
|| || || | || |||| |||||||||||| | || || || || || || ||||||||
Sbjct 1214 GCGGTTGA-ACGTTGCTTAAAGAGTATGGAGCGAGCATTCAACTTCGCGGATAATCAAGT 1272
Query 1503 GCTCAAGCTGTATGGTTTTAGCCATAGGGGATTGTTGAGCCCCAAGATTAAGAGGATCAG 1562
||||||||| ||||| ||| | || ||||||||||| ||||| ||||| |||||||||||
Sbjct 1273 GCTCAAGCTTTATGGGTTTGGTCACAGGGGATTGTTAAGCCCTAAGATCAAGAGGATCAG 1332
Query 1563 AAATGAGACAGTC-TCTCCTTTGGAGTTTGT-AGACAAGTTTGATATTCGCAGAAC 1616
|| || ||| | | ||| || | ||||| | ||| |||||||||||| |||||
Sbjct 1333 GAACGAAACAA-CATTTCCACTGAAATTTGTCA-ACAGGTTTGATATTCGGAGAAC 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70505043495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5