BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74390.1
Length=1765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476572 jgi|Araly1|476572|fgenesh2_kg.2__1702__AT1G74390.1 2207 0.0
> Ahg476572 jgi|Araly1|476572|fgenesh2_kg.2__1702__AT1G74390.1
Length=1574
Score = 2207 bits (1195), Expect = 0.0
Identities = 1429/1540 (93%), Gaps = 24/1540 (2%)
Strand=Plus/Plus
Query 18 AACAATGGCTTCGAGTCTGGGCGGCGATGAGAGAAGCGAGATAGCGTTTTTCGACCTTGA 77
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1 AACAATGGCTTCGACTCTGGGCGGCGATGAGAGAAGCGAGATAGCGTTTTTTGACCTAGA 60
Query 78 GACGGCGGTTCCGACCAAATCAGGG-GAGCCTTTCGCGATTTTGGAGTTTGGGGCCATCT 136
||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||
Sbjct 61 GACGGCGGTTCCGACCAAATC-GGGACAGCCTTTTGCGATTTTGGAGTTTGGGGCTATCT 119
Query 137 TAGTTTGCCCAAGGAGGCTAGAGGAGCTCTATAGTTACTCCACTTTGGTTCGACCTACTG 196
|||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| || |
Sbjct 120 TAGTTTGCCCTAGGAAGCTAGTGGAGCTCTATAGTTACTCCACTTTGGTTCGACCAACCG 179
Query 197 ATCTTTCCT-TAATCTCTACGCTCACAAAGCGACGTAGCGGCATTACGCGCGACGGAGTT 255
|||||| || | ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 ATCTTT-CTCTCATCTCAACGCTCACGAAGCGACGTAGCGGCATTACGCGCGACGGAGTC 238
Query 256 CTCTCTGCACATACATTCTCTGAAATCGCCGATAAGGTCTATGACATTCTTCACGGACGA 315
||||| |||| ||||||||||||| |||||||| ||||||| ||||||||||| ||||||
Sbjct 239 CTCTCAGCACCTACATTCTCTGAAGTCGCCGATGAGGTCTACGACATTCTTCATGGACGA 298
Query 316 ATTTGGGCGGGACATAACATAATTCGATTCGATTGTGTAAGAATAAGAGAAGCATTTGCA 375
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 299 ATTTGGGCGGGACATAACATAAAGAGATTCGATTGTGTAAGAATAAGAGATGCATTTGCA 358
Query 376 GAAATTGGTCTCTCTCCGCCAGAGCCGAAAGCTACAATTGATTCGCTTTCATTGTTGTCT 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAAATTGGTCTCTCTCCGCCAGAGCCGAAAGCTACAATTGATTCGCTTTCATTGTTGTCT 418
Query 436 CAGAAGTTTGGGAAGAGAGCTGGTGACATGAAGATGGCATCACTTGCTACATACTTCGGG 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CAGAAGTTTGGGAAGAGAGCTGGTGACATGAAGATGGCATCACTTGCTACATACTTCGGG 478
Query 496 CTAGGAGATCAAGCTCACAGGAGCTTAGATGATGTCCGGATGAATCTTGAAGTTGTCAAG 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTAGGAGATCAAGCTCACAGGAGCTTAGATGATGTCCGGATGAATCTTGAAGTTGTCAAG 538
Query 556 TACTGTGCAACCGTCTTGTTTCTGGAGTCCAGTGTTCCTGACATTCTTACAGACATGAGC 615
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 539 TACTGTGCAACCGTCTTGTTTCTGGAGTCCAGTGTCCCTGACATTCTTACAGACATGAGC 598
Query 616 TGGTTTTCCCCACGAAAAAGTCCCAGAACACGA--A-GTAATGGGAAGTTAGTG-GCTAA 671
||||||||||||||||||||||| ||||||||| | |||||| ||||| |||| | | |
Sbjct 599 TGGTTTTCCCCACGAAAAAGTCCGAGAACACGACGAAGTAATGAGAAGTCAGTGCG-TGA 657
Query 672 TGGAGTCAGAGAAAGCTCGACTTCTTCCTCCTCGAGTCCTAAAACTGATCCGAGTTCCTC 731
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 658 TGGAGTCAGAGAAAGCTCGACTTCTTCCTCCTCGAGTCCTAAAACTGATCCGAGTTTGTC 717
Query 732 TTCCGTGGACGCCACAATCGTCAAAAACCATCCCATCGTTTCTCTTCTTACGGAATGCTC 791
||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 718 TTCCGTGGATGCCACAATCGTCAAAAACCATCCCATCATTTCTCTTCTGACGGAATGCTC 777
Query 792 AGAAAGTGATGCATCAAGTTATGATATAGAAGATCCAAT-TGATATAACCACTTTAAT-A 849
|||||||||| |||| |||| || ||||| |||| | |||||||||||||||||| |
Sbjct 778 AGAAAGTGATACATCTAGTTGCGAAATAGA---TCCA-TCTGATATAACCACTTTAATTA 833
Query 850 GGTAAACTACGTATTGGAACTCTTCAGACGGATGCTGCAGAAGAAGCGAAAACTGTAAGA 909
| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 834 G-TAAACTACATATTGGAACTCTTCAGACGGATGCTGCAGACGAAGCGAAAACTGTAAGA 892
Query 910 CAGCAGGATGAATCACCTCCATCACCCGATTCCGATGCCAAAG-ATGAATCATTTTTGGG 968
|||||||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||
Sbjct 893 CAGCAGGATGAATCACCTCCATCACCCGATCCCGATGC-AAAGGAGGAATCATTTTTGGG 951
Query 969 TGTTAATGAAGTATCTGTTTCTAGCATCAGGGCAAGTCTTGTCCCGTTTTATCGTGGGAG 1028
|||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 952 TGTTAATGAAGTATCTGTTTCTAGCATCAGGGCAAGTCTTATCCCGTTTTACCATGGGAG 1011
Query 1029 CTTGAGAATGAAGCTATTTCACAACGACACCCCTCTGCATCTGTGTTGGCATAGCTTGAA 1088
| ||| ||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct 1012 CCTGAAAATGAAGCTGTTTCACAACGACACCCCTCTACATCTGTGTTGGTATAGCTTAAA 1071
Query 1089 AGTTCGGTTCGGAATAAGCCGGAAGTTTGTGGATCATGCAGGTCGTCCAAAGTTGAATAT 1148
| ||||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||||
Sbjct 1072 AATTCGGTTTGGAATAAGCCGGAAGTTTTTGGATCATGCAGGTCATCCAAGGTTGAATAT 1131
Query 1149 TATTGTTGACGCCCCTCTTGATCTATGCAAGATCTTGGACGCAGTTGATGCTGCTGCGCA 1208
| |||| ||| |||| |||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1132 TGTTGTCGACATACCTCCTGATTTATGCAAGATCTTGGACGCAGCTGATGCTGCTGCGCA 1191
Query 1209 CAACTTACCAACTGACTCAAGCACAAACTCAGATTGGAGACCCACTGTTATAAGGAAAGA 1268
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1192 TAACTTACCAATTGAGTCAAGCACAAACTCAGATTGGAGGCCCACTGTTATAAGGAAAGA 1251
Query 1269 AGGCTTTGCCAACTATCCCACAGCCAGACTGCATATAAGCTCAGAATCCAACGGAGATGA 1328
|||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 1252 GGGCTTTGCCAACTATCCCACAGCCAGACTGCAAATAAGCTCAGAATCCAATGGGGATGA 1311
Query 1329 TACCCTGTGTGGAACGCA-GGTATATCAAAAAGAAGAACCTTTGGGAACCAATCAAAAGC 1387
| ||| ||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1312 TGCCCGGTGTGGAAC-CAAGGTATATCAAAAAGAAGAACCTTTGGAAACCAATCAAAAGC 1370
Query 1388 TCGATGTCAGTAGCGATAACTTGGAAAAGCTTGAGTCAGCATTACTTCCCGGTACTCTGG 1447
||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1371 TCGATTTCAGTAGCGATAACTTTGAAAAGCTTGAGTCAGCATTACTTCCCGGTACCCTGG 1430
Query 1448 TTGATGCATTCTTCTCACTCGAGCCTTAC-AGTTATCAGCAAATGGCAGGGATACGTCTA 1506
||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||||
Sbjct 1431 TTGATGCATTCTTCTCACTCGAGCCTTACGA-TTATCAGAAAATGGCAGGGGTACGTCTA 1489
Query 1507 GCAGTCAAAAAGTTGGTGATCCTCCTGAA-AAAGTGATCT 1545
||| || ||||||||| |||| |||||| ||| ||||||
Sbjct 1490 ACAGCCAGAAAGTTGGTAATCCACCTGAAGAAA-TGATCT 1528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66238936055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5