BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74400.1
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339633 jgi|Araly1|339633|fgenesh1_pg.C_scaffold_2001732 2036 0.0
> Ahg339633 jgi|Araly1|339633|fgenesh1_pg.C_scaffold_2001732
Length=1998
Score = 2036 bits (1102), Expect = 0.0
Identities = 1267/1349 (94%), Gaps = 2/1349 (0%)
Strand=Plus/Plus
Query 1 ATGAGGTTTATCTTGCGTCATCTGCATTCACTTGGAGTGATCAACAAATTTGATTCCTTT 60
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGGTTTATCTTGCGTCATTTGAATTCACTTGGAGTGATCAACAAATTTGATTCCTTT 60
Query 61 CTTCTACATTTTCACACCAAATCGCTTAAATCTAACCACACTTTGAAGCAATATCTTGAA 120
|||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CTTCTACATTATCATACCAACTCGCTTAAATCTAACCACACTTTGAAGCATTATCTTGAA 120
Query 121 TCTGGGGAACCAATCAAAGCTCTTTTAG-ATTTCCGGCACCGATTCAGACAAAGTCCTAG 179
|||||||| ||||||||||||||||| | |||||| ||| ||||||||| ||||||| ||
Sbjct 121 TCTGGGGAGCCAATCAAAGCTCTTTT-GAATTTCCAGCATCGATTCAGAGAAAGTCCCAG 179
Query 180 TTTTGTTGACAGTTTTTCTGTTTTGTTTGCCATTAAAGTTTCGTCAGCTCAGAAAGCTTC 239
||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 180 TTTTGTTGACAGTTTCTCTGTGTTGTTTGCCATTAAAGCTTCGTCAGCTCAGAAAGCTTC 239
Query 240 CTCACTTGATGGTAGACAGATCCACGCTCTTGTAAGAAAACTAGGTTTCAATGCCGTTAT 299
|||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 240 CTCATTTGATGGTAGACAGATCCACGCTCTTGTAAGGAAGCTAGGGTTCAATGCCGTTAT 299
Query 300 TCAAATTCAAACATCTTTAGTGGGATTCTACTCTTCCGTGGGTGATGTCGATTATGCACG 359
|||||||||||||||| ||||||| || ||||| || | ||||||| ||||| |||||||
Sbjct 300 TCAAATTCAAACATCTCTAGTGGGGTTTTACTCCTCTGCGGGTGATCTCGATGATGCACG 359
Query 360 CCAAGTGTTCGACGAAACGCCTGAGAAACAGAACATTGTCTTGTGGACAGCGATGATTTC 419
|||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 360 CCAAGTGTTCGATGAAACGCCTGATAAACAGAACGTTGTCTTGTGGACAGCGATGATTTC 419
Query 420 AGCTTACACTGAGAATGAGAACTCTGTGGAAGCTATTGAGCTGTTTAAACGAATGGAAGC 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 AGCTTACACTGAGAATGAGAACTCTGTGGAAGCTATTGAGCTGTTTAACCGAATGGAAGC 479
Query 480 GGAAAAGATCGAACTTGATGGAGTGATTGTGACTGTGGCTTTATCAGCTTGTGCTGATCT 539
||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||
Sbjct 480 GGAGAAGATCGAACTTGATGAAGTGATTATGACTGTGGCTTTATCGGCTTGTGCTGATCT 539
Query 540 CGGGGCGGTGCAGATGGGAGAAGAGATTTATTCGCGTAGTATCAAGAGAAAACGAAGATT 599
|||||||||||||||||||||| ||||||||||||| || |||| ||| |||||||||||
Sbjct 540 CGGGGCGGTGCAGATGGGAGAACAGATTTATTCGCGGAGCATCAGGAGGAAACGAAGATT 599
Query 600 GGCTATGGATTTAACTCTGAGAAATTCACTTCTTAACATGTACGTGAAATCTGGGGAAAC 659
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 GGCTATGGATTTAACTTTGAGAAACTCACTTCTTAACATGTACGTGAAATCTGGGGAAAT 659
Query 660 TGAGAAAGCTAGGAAACTCTTTGATGAAAGTATGAGAAAAGATGTGACTACTTACACATC 719
|||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 660 TGAGAAAGCTAGGAAATTGTTTGATGAAACTATGAGAAAAGATGTGACTACTTACACATC 719
Query 720 TATGATCTTCGGGTATGCTTTAAACGGTCAAGCTCAAGAATCTTTAGAACTCTTCAAGAA 779
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 720 TATGATCTTCGGGTATGCTTTAAACGGTGAAGCTCAAGAATCTTTAGAACTCTTCAAGAA 779
Query 780 AATGAAGACGATTGATCAGAGCCAAGATACTGTCATTACTCCAAATGATGTGACTTTCAT 839
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 AATGAAGATGATTGATCAGAGCCAAGATACTGTAATTACTCCAAATGATGTGACTTTCAT 839
Query 840 CGGCGTCTTGATGGCTTGTAGTCACAGTGGCTTAGTAGAAGAAGGAAAACGACATTTCAA 899
|||||||||||||||||||||||||||||| |||||||||||||| |||| | |||||||
Sbjct 840 CGGCGTCTTGATGGCTTGTAGTCACAGTGGATTAGTAGAAGAAGGGAAACAATATTTCAA 899
Query 900 GAGCATGATTATGGATTACAATCTGAAACCTAGAGAAGCTCATTTCGGATGTATGGTGGA 959
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 900 GAGCATGATTGTGGATTACAATCTGAAACCTAGAGACGCTCATTTCGGATGTATGGTCGA 959
Query 960 TTTGTTTTGTCGGTCAGGTCATTTGAAAGATGCTCACGAGTTCATCAATCAGATGCCGAT 1019
|||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 960 TTTGTTTTGTCGTTCAGGTCATTTGAAGGATGCTCACGAGTTCATCAAACAAATGCCGAT 1019
Query 1020 AAAGCCAAACACAGTGATATGGAGAACACTGCTAGGCGCTTGCAGTCTTCACGGGAATGT 1079
||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 CAAGCCAAACGCTGTGATATGGAGAACACTGCTTGGCGCTTGCAGTCTTCACGGGAATGT 1079
Query 1080 TGAGCTCGGAGAAGAAGTTCAGAGACGGATCTTTGAGTTAGATCGTGATCATGTCGGAGA 1139
|||||| ||||| |||||||||| |||||||||| ||||||| |||||||||||||||||
Sbjct 1080 TGAGCTAGGAGAGGAAGTTCAGAAACGGATCTTTAAGTTAGAGCGTGATCATGTCGGAGA 1139
Query 1140 TTATGTTGCGTTGTCAAATATCTACGCTTCAAAAGGAATGTGGGATGAGAAATCAAAGAT 1199
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1140 TTATGTTGCGTTGTCGAATATCTACGCTTCAAAAGGAATGTGGGATGAGAAATGGAAGAT 1199
Query 1200 GAGGGATCGTGTGAGGAAGAGAAGAATGCCTGGTAAAAGCTGGATTGAACTCGGAAGCAT 1259
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1200 GAGGGATCGTGTGAGGAAGAGAAGAGTGCCCGGTAAAAGCTGGATTGAACTCGGAAGCAT 1259
Query 1260 TATCAATGAGTTTGTCTCAGGACCTGATAATAACGATGAGCAGCTGATGATGGGAGAGAT 1319
||||| ||||||||||||||||| |||| |||| || |||||||||||||||||||||||
Sbjct 1260 TATCACTGAGTTTGTCTCAGGACATGATGATAATGACGAGCAGCTGATGATGGGAGAGAT 1319
Query 1320 TAGTGAGGTTTTGAGATGTTTAGTTTCTT 1348
||||| ||||||||| |||||||||||||
Sbjct 1320 TAGTGTGGTTTTGAGGTGTTTAGTTTCTT 1348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51917003935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5