BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G74420.2 Length=1709 Score E Sequences producing significant alignments: (Bits) Value Ahg909062 jgi|Araly1|909062|Al_scaffold_0002_2143 2303 0.0 > Ahg909062 jgi|Araly1|909062|Al_scaffold_0002_2143 Length=1521 Score = 2303 bits (1247), Expect = 0.0 Identities = 1440/1532 (94%), Gaps = 17/1532 (1%) Strand=Plus/Plus Query 5 ATGAAGCGGGGCAAGAAGAACTCGGATGCGGGTGACCGACTCACCAACTCGGATACTCGA 64 ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| Sbjct 1 ATGAAGCGGGGCAAGAAGAACTCGGCTGCGGGTGACCCACTCACCAGCTCGGATACTCGA 60 Query 65 ACCGGGTCTAGCGAATTGAATGCGATGATGAAACCAAGTTTGAGTTCGATGAAAA-CGAT 123 ||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| |||| Sbjct 61 ACCGGGTATAGCGAATTGAATGTGATGATGAAACCAAGTTTGAGTTCGAT-AAAATCGAT 119 Query 124 GGGTCTACTTCTGGCGGTTCTTATGGTTGCTTCGGTTATGTTCTCTCTGTCCGTGGTGCT 183 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 120 GGGTCTACTTCTGGCGGTTCTTATGGTTGCTTCGGTTATGTTCTCTCTGTCGGTGGTGCT 179 Query 184 CAGAGACCCACCTTCC---GATGATGTTATTGAGACTGAAGCAGCCTCTAGAGTTCTTCA 240 |||||||||||||||| ||||||||| ||||||||||| |||||||||| |||||||| Sbjct 180 CAGAGACCCACCTTCCGATGATGATGTTGTTGAGACTGAATCAGCCTCTAGTGTTCTTCA 239 Query 241 GAGCAGATTGCACCAAGCAATCGAATCAGATGGTGGACTTAGCGAGAAGAAGGCACAGCT 300 || |||||| || ||| | |||||||||||||||||||||||||| |||||| Sbjct 240 GATCAGATT-------GC-ATC--A--AGATGGTGGACTTAGCGAGAAGAAGGAACAGCT 287 Query 301 TGGCAACATTAATCTTGTGCCTAGTTTTGATAAAGAATCATGCTTGAGCAGGTACGAGGC 360 ||| || ||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 288 CGGCGACTTTAATCTTGTGCCTAGTTTTGATAAAGGATCATGCTTGAGCAGGTATGAGGC 347 Query 361 GAGTTTATATCGAAAGGAATCGCCTTTTAAGCAATCCTCTTACCTGGATTACAGATTACA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 348 GAGTTTATATCGAAAGGAATCGCCTTTTAAGCAATCCTCTTACCTGGATTACAGATTACA 407 Query 421 AAGATACGAGGATCTTCATAGACGTTGTGGACCATTCACTAGATCCTATAACTTAACACT 480 ||||||||| |||||||||| ||| |||||||||||||||| |||||||||||| ||||| Sbjct 408 AAGATACGAAGATCTTCATACACGGTGTGGACCATTCACTACATCCTATAACTTGACACT 467 Query 481 TGACAAACTCAAGTCGGGAGATCGGTCTGACGGTGAAGTTTCTGGTTGTAGATATGTAAT 540 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 468 TGACAAACTCAAGTCAGGAGATCGGTCTGATGGTGAAGTTTCTGGTTGTAGATATGTAAT 527 Query 541 ATGGTTGAATTCCAATGGTGATCTTGGGAATAGGATGCTGAGTCTAGCTTCAGCTTTTCT 600 ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 528 ATGGTTGAACTCCAATGGTGAACTTGGGAATAGGATGCTGGGTCTAGCTTCAGCTTTTCT 587 Query 601 TTATGCTCTCTTAACAAATAGGTTTTTACTTGTCGAACTAGGAGTTGACATGGCTGATCT 660 ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 588 GTATGCTCTCTTAACAAATAGGGTTTTACTTGTCGAACTAGGACTTGACATGGCTGATCT 647 Query 661 TTTCTGCGAGCCATTTCCAAACACTACTTGGTTTCTTCCCCCAGAGTTTCCGCTCAACAG 720 ||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||||||| Sbjct 648 TTTCTGCGAGCCATTTCCAAACACTTCGTGGTTTCTTCCCCTAGAGTTTCGGCTCAACAG 707 Query 721 CCACTTCAACGAGCAGTCTCTTCTACGCAATTCTGGCAACCCGATGGTTGCATATCGACA 780 || ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 708 CCTGTTCAAAGAGCAGTCTCTTCTTCTCAATTCTGGCAACCCGATGGTTGCATATCGACA 767 Query 781 TGTAGTTCGTGATTCCAGTGACCAACAAAAGCTTTTCTTTTGTGAGGATAGTCAAGTTTT 840 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 768 TGTAGTTCGTGATTCCAGGGACCAACAAAAGCTTTTCTTTTGTGAGGAAAGTCAAGTTTT 827 Query 841 GTTGGAGGAAACCCCCTGGTTGATCTTAAAAGCGGATAGTTTCTTTCTCCCATCTCTCTT 900 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 828 GTTGGAGGAAACCCCATGGTTGATCTTAAAAGCGGATAGTTTCTTTCTCCCATCTCTCTT 887 Query 901 CTCAGTCTCGTCATTCAAGCAGGAACTTCAAATGCTCTTCCCGGAAAAAGATACTGCTTT 960 |||||||||| ||||||||||||||||||||| |||||||||||||||||| || ||||| Sbjct 888 CTCAGTCTCGCCATTCAAGCAGGAACTTCAAAAGCTCTTCCCGGAAAAAGAAACAGCTTT 947 Query 961 TCACTTCTTAAGTCAGTATCTCTTTCACCCAACTAATGTTGTCTGGGGTCTCATTACACG 1020 ||||||||| |||| | ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 948 TCACTTCTTCAGTCGGCATCTCTTCCACCCAACTAATGTTGTCTGGGGTCTCATTACACG 1007 Query 1021 ATACTATAACGCATATCTTGCTAAGGCTGATCAAAGAATAGGAATCTATATTGGGGTCTC 1080 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1008 CTACTATCGCGCATATCTTGCTAGGGCTGATCAAATAATAGGAATCTATATTGGGGTCTC 1067 Query 1081 TGAGTCTGGAAATGAACAGTTCCAGCATTTGATAGATCAGATTTTAGCTTGTGGAACTAG 1140 ||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1068 TGAGTCTGGAAATGATCAGTTCCAGCATTCGATAGATCAGATTCTAGCTTGTGGAACTAG 1127 Query 1141 ACATAAGCTGCTTCCTGAAGTTGACAAACAAAGAAATCTCCCTTCAAGCCAAGTTCTGAA 1200 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1128 ACATAAGCTGCTTCCTGAAGTTGACAAACAAAGACATCTCCCTTCAAGCCAAGTTCTGAA 1187 Query 1201 CCGAAAATCAAAGGCAGTGTTTATCTCATCTTCTTCTCCAGGGTATTTTAAGAGTATCAG 1260 ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1188 CCGAAAATCAACGGCAGTGTTTATCTCATCTTCTTCTCCAGGGTATTTTGAGAGTATCAG 1247 Query 1261 GGACGTATATTGGGAAAACCCAACAGTGATGGGAGAGATAATCAGCGTTCACAAGCCGAG 1320 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1248 GGACGTATATTGGGAAAATCCAACAGTGATGGGAGAGATAATCAGCGTTCACAAGCCGAG 1307 Query 1321 CTACAAGGACTACCAAAAAACCCCGAGGAACATGGAAAGTAAGAGAGCATGGGCTGAGAT 1380 | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1308 CCACAAGGACTACCAAATAACCCCGAGGAACATGGAAAGTAAGAGAGCATGGGCTGAGAT 1367 Query 1381 ATACCTTCTGAGTTGTTCTGATGCGCTGGTGGTCACAGGTTTATGGTCCTCACTCGTGGA 1440 ||||||||||||||||||||||| |||||| |||||| ||| ||||||||| |||||| | Sbjct 1368 ATACCTTCTGAGTTGTTCTGATGTGCTGGTAGTCACAAGTTCATGGTCCTCGCTCGTGAA 1427 Query 1441 GGTTGCTCATGGCCTTGGAGGGTTGAAGCCATGGGTGTTGAACAAAGCTGAGAATGGGAC 1500 ||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 1428 GGTGGCTCATGGCCTTGGAGGGTTGAAGCCATGGGTACTGAACAAGGCTGAGAATGGGAC 1487 Query 1501 TGCCCATGAGCCTTACTGTGTGAAAGCAAGAT 1532 ||||||||| ||||||||||||| |||||||| Sbjct 1488 TGCCCATGAACCTTACTGTGTGAGAGCAAGAT 1519 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64105882335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5