BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74420.2
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909062 jgi|Araly1|909062|Al_scaffold_0002_2143 2303 0.0
> Ahg909062 jgi|Araly1|909062|Al_scaffold_0002_2143
Length=1521
Score = 2303 bits (1247), Expect = 0.0
Identities = 1440/1532 (94%), Gaps = 17/1532 (1%)
Strand=Plus/Plus
Query 5 ATGAAGCGGGGCAAGAAGAACTCGGATGCGGGTGACCGACTCACCAACTCGGATACTCGA 64
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 1 ATGAAGCGGGGCAAGAAGAACTCGGCTGCGGGTGACCCACTCACCAGCTCGGATACTCGA 60
Query 65 ACCGGGTCTAGCGAATTGAATGCGATGATGAAACCAAGTTTGAGTTCGATGAAAA-CGAT 123
||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||||
Sbjct 61 ACCGGGTATAGCGAATTGAATGTGATGATGAAACCAAGTTTGAGTTCGAT-AAAATCGAT 119
Query 124 GGGTCTACTTCTGGCGGTTCTTATGGTTGCTTCGGTTATGTTCTCTCTGTCCGTGGTGCT 183
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 GGGTCTACTTCTGGCGGTTCTTATGGTTGCTTCGGTTATGTTCTCTCTGTCGGTGGTGCT 179
Query 184 CAGAGACCCACCTTCC---GATGATGTTATTGAGACTGAAGCAGCCTCTAGAGTTCTTCA 240
|||||||||||||||| ||||||||| ||||||||||| |||||||||| ||||||||
Sbjct 180 CAGAGACCCACCTTCCGATGATGATGTTGTTGAGACTGAATCAGCCTCTAGTGTTCTTCA 239
Query 241 GAGCAGATTGCACCAAGCAATCGAATCAGATGGTGGACTTAGCGAGAAGAAGGCACAGCT 300
|| |||||| || ||| | |||||||||||||||||||||||||| ||||||
Sbjct 240 GATCAGATT-------GC-ATC--A--AGATGGTGGACTTAGCGAGAAGAAGGAACAGCT 287
Query 301 TGGCAACATTAATCTTGTGCCTAGTTTTGATAAAGAATCATGCTTGAGCAGGTACGAGGC 360
||| || ||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 288 CGGCGACTTTAATCTTGTGCCTAGTTTTGATAAAGGATCATGCTTGAGCAGGTATGAGGC 347
Query 361 GAGTTTATATCGAAAGGAATCGCCTTTTAAGCAATCCTCTTACCTGGATTACAGATTACA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 GAGTTTATATCGAAAGGAATCGCCTTTTAAGCAATCCTCTTACCTGGATTACAGATTACA 407
Query 421 AAGATACGAGGATCTTCATAGACGTTGTGGACCATTCACTAGATCCTATAACTTAACACT 480
||||||||| |||||||||| ||| |||||||||||||||| |||||||||||| |||||
Sbjct 408 AAGATACGAAGATCTTCATACACGGTGTGGACCATTCACTACATCCTATAACTTGACACT 467
Query 481 TGACAAACTCAAGTCGGGAGATCGGTCTGACGGTGAAGTTTCTGGTTGTAGATATGTAAT 540
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 468 TGACAAACTCAAGTCAGGAGATCGGTCTGATGGTGAAGTTTCTGGTTGTAGATATGTAAT 527
Query 541 ATGGTTGAATTCCAATGGTGATCTTGGGAATAGGATGCTGAGTCTAGCTTCAGCTTTTCT 600
||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 528 ATGGTTGAACTCCAATGGTGAACTTGGGAATAGGATGCTGGGTCTAGCTTCAGCTTTTCT 587
Query 601 TTATGCTCTCTTAACAAATAGGTTTTTACTTGTCGAACTAGGAGTTGACATGGCTGATCT 660
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 588 GTATGCTCTCTTAACAAATAGGGTTTTACTTGTCGAACTAGGACTTGACATGGCTGATCT 647
Query 661 TTTCTGCGAGCCATTTCCAAACACTACTTGGTTTCTTCCCCCAGAGTTTCCGCTCAACAG 720
||||||||||||||||||||||||| | ||||||||||||| |||||||| |||||||||
Sbjct 648 TTTCTGCGAGCCATTTCCAAACACTTCGTGGTTTCTTCCCCTAGAGTTTCGGCTCAACAG 707
Query 721 CCACTTCAACGAGCAGTCTCTTCTACGCAATTCTGGCAACCCGATGGTTGCATATCGACA 780
|| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 708 CCTGTTCAAAGAGCAGTCTCTTCTTCTCAATTCTGGCAACCCGATGGTTGCATATCGACA 767
Query 781 TGTAGTTCGTGATTCCAGTGACCAACAAAAGCTTTTCTTTTGTGAGGATAGTCAAGTTTT 840
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 768 TGTAGTTCGTGATTCCAGGGACCAACAAAAGCTTTTCTTTTGTGAGGAAAGTCAAGTTTT 827
Query 841 GTTGGAGGAAACCCCCTGGTTGATCTTAAAAGCGGATAGTTTCTTTCTCCCATCTCTCTT 900
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 GTTGGAGGAAACCCCATGGTTGATCTTAAAAGCGGATAGTTTCTTTCTCCCATCTCTCTT 887
Query 901 CTCAGTCTCGTCATTCAAGCAGGAACTTCAAATGCTCTTCCCGGAAAAAGATACTGCTTT 960
|||||||||| ||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 888 CTCAGTCTCGCCATTCAAGCAGGAACTTCAAAAGCTCTTCCCGGAAAAAGAAACAGCTTT 947
Query 961 TCACTTCTTAAGTCAGTATCTCTTTCACCCAACTAATGTTGTCTGGGGTCTCATTACACG 1020
||||||||| |||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 948 TCACTTCTTCAGTCGGCATCTCTTCCACCCAACTAATGTTGTCTGGGGTCTCATTACACG 1007
Query 1021 ATACTATAACGCATATCTTGCTAAGGCTGATCAAAGAATAGGAATCTATATTGGGGTCTC 1080
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1008 CTACTATCGCGCATATCTTGCTAGGGCTGATCAAATAATAGGAATCTATATTGGGGTCTC 1067
Query 1081 TGAGTCTGGAAATGAACAGTTCCAGCATTTGATAGATCAGATTTTAGCTTGTGGAACTAG 1140
||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1068 TGAGTCTGGAAATGATCAGTTCCAGCATTCGATAGATCAGATTCTAGCTTGTGGAACTAG 1127
Query 1141 ACATAAGCTGCTTCCTGAAGTTGACAAACAAAGAAATCTCCCTTCAAGCCAAGTTCTGAA 1200
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1128 ACATAAGCTGCTTCCTGAAGTTGACAAACAAAGACATCTCCCTTCAAGCCAAGTTCTGAA 1187
Query 1201 CCGAAAATCAAAGGCAGTGTTTATCTCATCTTCTTCTCCAGGGTATTTTAAGAGTATCAG 1260
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1188 CCGAAAATCAACGGCAGTGTTTATCTCATCTTCTTCTCCAGGGTATTTTGAGAGTATCAG 1247
Query 1261 GGACGTATATTGGGAAAACCCAACAGTGATGGGAGAGATAATCAGCGTTCACAAGCCGAG 1320
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 GGACGTATATTGGGAAAATCCAACAGTGATGGGAGAGATAATCAGCGTTCACAAGCCGAG 1307
Query 1321 CTACAAGGACTACCAAAAAACCCCGAGGAACATGGAAAGTAAGAGAGCATGGGCTGAGAT 1380
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 CCACAAGGACTACCAAATAACCCCGAGGAACATGGAAAGTAAGAGAGCATGGGCTGAGAT 1367
Query 1381 ATACCTTCTGAGTTGTTCTGATGCGCTGGTGGTCACAGGTTTATGGTCCTCACTCGTGGA 1440
||||||||||||||||||||||| |||||| |||||| ||| ||||||||| |||||| |
Sbjct 1368 ATACCTTCTGAGTTGTTCTGATGTGCTGGTAGTCACAAGTTCATGGTCCTCGCTCGTGAA 1427
Query 1441 GGTTGCTCATGGCCTTGGAGGGTTGAAGCCATGGGTGTTGAACAAAGCTGAGAATGGGAC 1500
||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1428 GGTGGCTCATGGCCTTGGAGGGTTGAAGCCATGGGTACTGAACAAGGCTGAGAATGGGAC 1487
Query 1501 TGCCCATGAGCCTTACTGTGTGAAAGCAAGAT 1532
||||||||| ||||||||||||| ||||||||
Sbjct 1488 TGCCCATGAACCTTACTGTGTGAGAGCAAGAT 1519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64105882335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5