BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74430.1
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476577 jgi|Araly1|476577|fgenesh2_kg.2__1707__AT1G74430.1 1472 0.0
Ahg335126 jgi|Araly1|335126|fgenesh1_pg.C_scaffold_1001691 370 2e-101
Ahg478795 jgi|Araly1|478795|fgenesh2_kg.3__1496__AT3G13890.1 69.4 6e-11
> Ahg476577 jgi|Araly1|476577|fgenesh2_kg.2__1707__AT1G74430.1
Length=1272
Score = 1472 bits (797), Expect = 0.0
Identities = 896/943 (95%), Gaps = 9/943 (1%)
Strand=Plus/Plus
Query 159 AAGACTTGAATCGACCGGAGAAGAGATACGTGTAGAGATCTGATTGGCTCACCGGAGAGA 218
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 113 AAGACTTGAATCGACCGGAGAAGAGATACGTGTCGAGATCTGATTAGCTCACCGGAGAGA 172
Query 219 ACAAAACAA-GAAATGGGGAGGACGACGTGGTTCGACGTTGACGGGTTGAGGAAAGGAGA 277
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 ACAAAACAATAAAATGGGGAGGACGACGTGGTTCGACGTTGACGGGTTGAGGAAAGGAGA 232
Query 278 GTGGACGGCGGAGGAAGACCGGAAGCTCGTGGTTTACATCAACGAACACGGTCTAGGCGA 337
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 233 GTGGACGGCGGAGGAAGACCGGAAGCTCGTGGTTTACATCAACGAACACGGTCTCGGCGA 292
Query 338 GTGGGGTTCACTGCCTAAGAGAGCCGGTCTACAAAGATGTGGAAAGAGTTGTAGATTAAG 397
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 293 GTGGGGTTCACTGCCTAAGAAAGCCGGTCTGCAAAGATGTGGAAAGAGTTGTAGATTAAG 352
Query 398 ATGGCTGAATTATTTGAGGCCTGGGATTAAAAGAGGCAAGTTCACTCCTCAGGAAGAAGA 457
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 353 ATGGCTGAATTATTTGAGGCCTGGGATTAAAAGAGGCAAATTCACTCCTCAGGAGGAAGA 412
Query 458 AGAAATCATCAAATACCATGCTCTTCTTGGAAACAGGTGGGCAGCAATAGCTAAGCAAAT 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AGAAATCATCAAATACCATGCTCTTCTTGGAAACAGGTGGGCAGCAATAGCTAAGCAAAT 472
Query 518 GCCAAACAGAACAGATAATGACATAAAGAACCATTGGAACTCATGCCTTAAGAAAAGACT 577
||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 473 GCCAAGCAGAACAGACAATGACATAAAGAACCATTGGAACTCATGTCTTAAGAAAAGACT 532
Query 578 TGCTAAAAAAGGAATCGATCCAATGACCCATGAGCCAACAACAACAACAAGCCTCACCGT 637
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 533 TGCTAAAAAAGGAATCGATCCAATGACCCATGAGCCAACAACAACAA---GCCTCACCGT 589
Query 638 CGATGTCACCTCCTCATCAACTACGTCGTCTCCTACACCGAGCCCTACTTCTTCTTCTTT 697
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 590 CGATGTCACCTCCTCATCAACTACGTCGTCTCCTACACCGAGCCCTACTTCTTCTTCTGT 649
Query 698 TTCCTCCTGTTCCTCTACTGGCTCTGCACGTTTCCTTAACAAGCTCGCTGCTGGAATCTC 757
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TTCCTCCTCTTCATCCACTGGCTCTGCACGTTTCCTTAACAAGCTCGCTGCTGGAATCTC 709
Query 758 GTCAAGAAAACACGGACTAGAGAGTATCAAGACAGTGATATTGGCAGAACAACCAAGAGA 817
||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 710 GTCGAGAAAACACGGACTTGAGAGTATCAAGACAGTGATATTGTCAGAACAACCAAGAGA 769
Query 818 AGCCGTTGATGAAGAGAAGATGATGACAATTAACATGAAAGAGAAGGAATTGATTAGTTG 877
|||||||||||||||||||||||||| || |||| |||| |||||||||||||||||
Sbjct 770 AGCCGTTGATGAAGAGAAGATGATGATAAG---CATGGAAGAAAAGGAATTGATTAGTTG 826
Query 878 TTACATGGAGATTGATGAGACGATGAGTATTGATGAACTACCTTGTGATGACTCGACGTC 937
|| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 827 TTTCATGGAGATTGATGAGACGCTGAGTATTGATGAACTATTTTGTGATGACTCGACGTC 886
Query 938 TGGCTTCGTGGCTTTTGACGACTACTCATTAATCGACCCATACAGAGACGGTGTGTACGT 997
|||||||||||||||||| ||||||||||||| ||| ||||||||| || |||||||||
Sbjct 887 TGGCTTCGTGGCTTTTGATGACTACTCATTAACCGATCCATACAGATACAGTGTGTACGA 946
Query 998 ATCTGATTTCTACGATGAGACTGAACACCTTGACCTGTTCCTTCTTTGAATCACATTTCC 1057
|||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| ||
Sbjct 947 ATCTGATTTCTATGATGAGACTGAACAGCTTGACCTGTTCCTCCTTTGAATCACATCTC- 1005
Query 1058 TTTGTCTAAATAAATCCGTTTCTTTAGTGTGACgagagagaga 1100
||||||||| |||| || |||||||||||||||||||||||||
Sbjct 1006 TTTGTCTAA-TAAACCCATTTCTTTAGTGTGACGAGAGAGAGA 1047
> Ahg335126 jgi|Araly1|335126|fgenesh1_pg.C_scaffold_1001691
Length=816
Score = 370 bits (200), Expect = 2e-101
Identities = 327/388 (84%), Gaps = 10/388 (3%)
Strand=Plus/Plus
Query 231 ATGGGGAGGACGACGTGGTTCGACGTTGACGGGTTGAGGAAAGGAGAGTGGACGGCGGAG 290
||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||
Sbjct 1 ATGGGGAGGACGACGTGGTTCGACGACGACGGGATGAAGAAAGGAGAGTGGACGGCGGAG 60
Query 291 GAAGACCGGAAGCTCGTGGTTTACATCAACGAACACGG--TCTAGGCGAGTGGGGTTCAC 348
||||||| ||||||||| | |||||||||||| || || ||| | || ||| |||| |
Sbjct 61 GAAGACCAGAAGCTCGTCGCTTACATCAACGAGCATGGCATCT-GT-GATTGGCGTTCCC 118
Query 349 TGCCTAAGAGAGCCGGTCTACAAAGATGTGGAAAGAGTTGTAGATTAAGATGGCTGAATT 408
| || || ||||| ||| | || |||||||||||||| || |||||||| ||||| || |
Sbjct 119 TCCCCAAAAGAGCTGGTTTGCAGAGATGTGGAAAGAGCTGCAGATTAAGGTGGCTTAACT 178
Query 409 ATTTGAGGCCTGGGATTAAAAGAGGCAAGTTCACTCCTCAGGAAGAAGAAGAAATCATCA 468
|| | ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||
Sbjct 179 ATCTAAGGCCTGGGATTAGAAGAGGCAAATTCACTCCTCAGGAAGAAGAAGATATCATCC 238
Query 469 AA-TACCATGCTCTTCTTGGAAACAGGTGGGCAGCAATAGCTAAGCAAATGCCA-AA-CA 525
|| | | ||||| |||| ||||||||||||||||| ||||| ||||| |||| | || |
Sbjct 239 AACTTC-ATGCTGTTCTCGGAAACAGGTGGGCAGCCATAGCGAAGCAGATGC-AGAATCG 296
Query 526 GAACAGATAATGACATAAAGAACCATTGGAACTCATGCCTTAAGAAAAGACTTGCTAAAA 585
|| |||| ||||| || ||||||||||||||||| || || |||||||||||| | | ||
Sbjct 297 GA-CAGACAATGATATCAAGAACCATTGGAACTCTTGTCTCAAGAAAAGACTTTCGAGAA 355
Query 586 AAGGAATCGATCCAATGACCCATGAGCC 613
| |||||||| || |||||||| |||||
Sbjct 356 AGGGAATCGACCCGATGACCCACGAGCC 383
> Ahg478795 jgi|Araly1|478795|fgenesh2_kg.3__1496__AT3G13890.1
Length=1107
Score = 69.4 bits (37), Expect = 6e-11
Identities = 69/84 (82%), Gaps = 4/84 (5%)
Strand=Plus/Plus
Query 372 AGATGTGGAAAGAGTTGTAGATTAAGATGGCTGAATTATTTGAGG-CCTGGGATTAAAAG 430
|||||||||||||||||||||||||||||| | |||||| | | | |||| ||||| |
Sbjct 166 AGATGTGGAAAGAGTTGTAGATTAAGATGGATAAATTATCT-ACGACCTGATCTTAAACG 224
Query 431 AGGCAAG-TTCACTCCTCAGGAAG 453
|| ||| ||| ||||||| ||||
Sbjct 225 TGG-AAGCTTCTCTCCTCAAGAAG 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50970340029
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5