BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74440.1
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476577 jgi|Araly1|476577|fgenesh2_kg.2__1707__AT1G74430.1 418 5e-116
Ahg316383 jgi|Araly1|316383|fgenesh1_pm.C_scaffold_2001416 364 6e-100
> Ahg476577 jgi|Araly1|476577|fgenesh2_kg.2__1707__AT1G74430.1
Length=1272
Score = 418 bits (226), Expect = 5e-116
Identities = 248/258 (96%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 883 AGCAGCGAGCTTGTTAAGGAAACGTGCAGAGCCAGTAGAGGAACAGGAGGAAAAAGAAGA 942
|||||||||||||||||||||||||||||||||||| || ||| ||||||||| ||||||
Sbjct 701 AGCAGCGAGCTTGTTAAGGAAACGTGCAGAGCCAGTGGATGAAGAGGAGGAAACAGAAGA 642
Query 943 AGAAGTAGGGCTCGGTGTAGGAGACGACGTAGTTGATGAGGAGGTGACATCGACGGTGAG 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 AGAAGTAGGGCTCGGTGTAGGAGACGACGTAGTTGATGAGGAGGTGACATCGACGGTGAG 582
Query 1003 GCTTGTTGTTGTTGTTGGCTCATGGGTCATTGGATCGATTCCTTTTTTAGCAAGTCTTTT 1062
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GCTTGTTGTTGTTG--G-CTCATGGGTCATTGGATCGATTCCTTTTTTAGCAAGTCTTTT 525
Query 1063 CTTAAGGCATGAGTTCCAATGGTTCTTTATGTCATTATCTGTTCTGTTTGGCATTTGCTT 1122
|||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 524 CTTAAGACATGAGTTCCAATGGTTCTTTATGTCATTGTCTGTTCTGCTTGGCATTTGCTT 465
Query 1123 AGCTATTGCTGCCCACCT 1140
||||||||||||||||||
Sbjct 464 AGCTATTGCTGCCCACCT 447
Score = 255 bits (138), Expect = 4e-67
Identities = 167/181 (92%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 703 tctctctctcGTCACACTAAAGAAACGGATTTATTTAGACAAAGGAAATGTGATTCAAAG 762
||||||||||||||||||||||||| || |||| ||||||||| || |||||||||||||
Sbjct 1047 TCTCTCTCTCGTCACACTAAAGAAATGGGTTTA-TTAGACAAA-GAGATGTGATTCAAAG 990
Query 763 AAGGAACAGGTCAAGGTGTTCAGTCTCATCGTAGAAATCAGATACGTACACACCGTCTCT 822
|||||||||||||| |||||||||||||| |||||||||||| ||||||||| || |||
Sbjct 989 GAGGAACAGGTCAAGCTGTTCAGTCTCATCATAGAAATCAGATTCGTACACACTGTATCT 930
Query 823 GTATGGGTCGATTAATGAGTAGTCGTCAAAAGCCACGAAGCCAGACGTCGAGTCATCACA 882
|||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 929 GTATGGATCGGTTAATGAGTAGTCATCAAAAGCCACGAAGCCAGACGTCGAGTCATCACA 870
Query 883 A 883
|
Sbjct 869 A 869
> Ahg316383 jgi|Araly1|316383|fgenesh1_pm.C_scaffold_2001416
Length=576
Score = 364 bits (197), Expect = 6e-100
Identities = 297/341 (87%), Gaps = 24/341 (7%)
Strand=Plus/Plus
Query 322 GCTCTGTTATG-TTTCTCTTGTTGGATTGGCTCTAGCTTCCTCGCAGCTCGATTAGGACA 380
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 GCTCTGTTATGTTTTTTCTTGTTGGATTGGCTCTAGCTTCCTCGCAGCTCGATTAGGACA 317
Query 381 TTCCTTGACTTTAAAGGTTGGAGTAGCTTCTCAGCTCTTATGTTGGACTGGTCAGTTCCT 440
||||||||| || | | ||||||| ||||||| ||||||||||||
Sbjct 318 TTCCTTGAC-------CTT--A--A-------AGCTCTTGTGTTGGAGTGGTCAGTTCCT 359
Query 441 CGGACATGGCTTGTTTGAGAAACGAGCTCCTGCAC-TTTTAGACAATCTACTCCAAGCTT 499
||| || |||||||||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct 360 CGGTCACGGCTTGTTTGAGAAACGAGCTCCTGCACTTTTTA-ATAATCTACTCCAAGCTT 418
Query 500 TTCTTATGGGTCCTTTCTTTGTGTTGCTCGAGGTGTTGCAGTCTGTTTTCGGGTACGAGC 559
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 419 TTCTGATGGGTCCTTTCTTCGTGTTGCTCGAGGTGTTGCAGTCTGTTTTCGGGTACGAAC 478
Query 560 CATACCCTGGATTTAAAGCACGCGTCGATTCCAAGATAGAGAGTGGAATCAAGGAATGGA 619
||||| |||||||||||||||||||| | |||||||||||||||| |||||| |||||||
Sbjct 479 CATACTCTGGATTTAAAGCACGCGTCAACTCCAAGATAGAGAGTGAAATCAAAGAATGGA 538
Query 620 GAGAAAAGAAGAAACAGCAGCAGATGAAGAAGGTCACTTAA 660
|||||| | | || || || ||| ||||||||||||||||
Sbjct 539 GAGAAA-GTA-AAG-AGAAGAAGAAGAAGAAGGTCACTTAA 576
Score = 207 bits (112), Expect = 1e-52
Identities = 213/257 (83%), Gaps = 25/257 (10%)
Strand=Plus/Plus
Query 34 ATGAGCAATCGCATCGGATTGCTCGATCTAGAGAAGCATTTTGCTTTCTATGGAGCTTAT 93
|||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGCAAGCGTATTGGATTGTTCGATCTAGAGAAGCATTTTGCTTTCTATGGAGCTTAT 60
Query 94 CACAGCAATCCCATTAACATTATAATCCACACTCT-------C---TTCGT-AT-GGC-C 140
|||||| ||||||||||||| |||||||||||| | | ||| | || | |
Sbjct 61 CACAGCGATCCCATTAACATAATAATCCACACTGTAGAGAAACAAGTTC-TCATCTCCAC 119
Query 141 A-A-A-------CGTCTTCGCTACTCTCCTTTTCCTCTACTCTACGCCACCGATTTTAGA 191
| | | |||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 120 ACACACTCTGTTCGTCTTCGCTACCCTTCTCTTCCTCTACTCTACGCCACCGATTTTAGA 179
Query 192 TCACTCTCAATTAGGGTTCCTC-AAGTCGCTGACATTTGATGGTGTTTTGCGTTTGGACA 250
||||||||||||||| |||||| || || ||||| ||||| |||||||||| |||||||
Sbjct 180 TCACTCTCAATTAGGCTTCCTCCAA-TCACTGACTTTTGACAGTGTTTTGCGCTTGGACA 238
Query 251 TTGGTTTTACCCTCACT 267
|||||||||| ||||||
Sbjct 239 TTGGTTTTACTCTCACT 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44870673309
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5