BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74450.1
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476579 jgi|Araly1|476579|fgenesh2_kg.2__1709__AT1G74450.1 1993 0.0
Ahg472100 jgi|Araly1|472100|fgenesh2_kg.1__2054__AT1G18740.1 466 3e-130
> Ahg476579 jgi|Araly1|476579|fgenesh2_kg.2__1709__AT1G74450.1
Length=1419
Score = 1993 bits (1079), Expect = 0.0
Identities = 1310/1416 (93%), Gaps = 38/1416 (3%)
Strand=Plus/Plus
Query 18 aaaaaaa-aaTAGACGCGGTCAAAATTCTCTCTCAATTCTATCAATATAAAGACAATCTC 76
||||||| || ||||||||||||||||||||||||| | ||||||||||||| ||||| |
Sbjct 1 AAAAAAATAA-AGACGCGGTCAAAATTCTCTCTCAA-T-TATCAATATAAAGCCAATCCC 57
Query 77 TTTCTCATTAGGGTTTTTAATTTTCATCATCATCATCACTCTCTCTGCTCCCAAATTCAG 136
||| ||||||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct 58 ATTCCCATTAGGGTTTTTAATTTT--T-ATCATCATCACTCTCTCTGCTCCCAAAATCAG 114
Query 137 aaaaaaaGGAACGATTTTTATTTCCGGTGAATGAGAATTTTCTCTCGAATTTGATCGATC 196
||| || | |||||||| ||||||||| ||||||||||||||||| |
Sbjct 115 ----AAA--AA--A-----ATTTCCGGGGAATGAGAAATTTCTCTCGAATTTGAT---T- 157
Query 197 ACATATTTCATCTGTGTGTTTTCATTTTGAGGATGCCAGCAACGGAATATCAAAGATCAT 256
|| ||| | |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 158 ---TA--TCA-C-----ATTTTGATTTTGAGGATGCCAGCAACGGATTATCAAAGATCAT 206
Query 257 TCGGGAGGTCTTTTCTGAATTTACGGCGAGACACGGCGGTGAACTCGGTTGAGTCAACGA 316
|||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 207 TCGGGAGGTCTTTTCTCAATTTACGTCGAGACACGGCGGTAAACTCGGTTGACTCAACGG 266
Query 317 CGGTTACCCCCGAGTTGACTCAGATGGAAGCAGAGCTTGTTTCGTTTCAGAGAAAAGTTG 376
| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 267 CAGTTACCGTCGAGTTGACTCAGATGGAAGCAGAGCTTGATTCGTTTCAGAGAAAAGTTG 326
Query 377 CTGAGAGGTTTATCGATCTCAATGCGTCTAGTTGTGAAGATCTACTGTCTCTCGAATGGG 436
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 327 CTGAGAGGTTTATCGATCTCAATGCCTCTAGTTGTGAAGATCTACTGTCTCTTGAATGGG 386
Query 437 TTGGGAAGCTTCTTGATTCGTTTCTATCTTGTCAAGAAGAGTTTCGTTCCATAGTCATCA 496
||||||||||||||||||||||| | ||||||||||||||||||||| |||| |||||||
Sbjct 387 TTGGGAAGCTTCTTGATTCGTTTTTGTCTTGTCAAGAAGAGTTTCGTGCCATCGTCATCA 446
Query 497 ATCATCGTTCGATGATTACTAAACCACCGATGGATCGATTGGTTTCAGATTACTTCGAGA 556
| ||||||||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 447 ACCATCGTTCGATGATTACTAAACCACCGGCGGATCGATTGATTGCAGATTACTTCGAGA 506
Query 557 GAAGTGTTAAAGCTCTTGATGTTTGTAACGCGATTCGTGATGGTGTTGAACAGATCCGTC 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 GAAGTGTTAAAGCTCTTGATGTTTGTAACGCGATTCGTGATGGTGTTGAACAGATCCGTC 566
Query 617 AATGGCAGAAACTTATCGAGATTGTAATTTGTGCTTTCAACAACAATGGAGGAGGAAGTA 676
||||||||||||| ||||| || ||||| ||||||||||||||||| || ||||||||||
Sbjct 567 AATGGCAGAAACTAATCGAAATCGTAATCTGTGCTTTCAACAACAACGGTGGAGGAAGTA 626
Query 677 GT-G--GCAAGAGACCTCTTGGAGAAGGTCAGTTTCGTCGTGCGAGGAAGACTTTGATTG 733
|| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 GTAGTAGCCAGAGACCTCTTGGAGAAGGTCAGTTTCGTCGTGCGAGGAAGACTTTGATTG 686
Query 734 AGTTAGCTATTGGTATGCTTGATGAGAAGGATTCATCTTCTAGCTCAGTGTCGTCTCAGC 793
||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 687 AGTTAGCAATTGGTATGCTTGATGAGAAGGATTCATCTTCAAGCTCAGTGTCGTCGCAGC 746
Query 794 ATCGTAACCGGTCTTTTGGAAGGAACAAGGAGCAGCTTCATCACCGAACAATCGGGCATT 853
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 747 ATCGTAACCGGTCTTTTGGAAGGAACAAGGAGCATCTTCATCACCGAACAATCGGGCATT 806
Query 854 TCAGGTCGCTTTCTTGGAGTGTTTCGAGATCATGGTCTGCTTCTAAGCAACTACAAGCTA 913
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 807 TCAGGTCGCTTTCTTGGAGTGTTTCAAGATCATGGTCTGCTTCTAAGCAATTACAAGCTA 866
Query 914 TTGGAAACAACTTAGCTACGCCTCGAGCTAGTGACATTACTGCAACTAATGGTCTTATTG 973
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 867 TTGGGAACAATTTAGCTACGCCTCGAGCTAGTGACATTACTGCAACTAATGGTCTTGTTG 926
Query 974 TTCCGGTTTATACAATGACTACGGTATTGTTGTTTGTGATGTGGGCACTTGTAGCTGCGA 1033
||||||||||||| |||||| || |||||||||||||||||||||| ||||| || ||||
Sbjct 927 TTCCGGTTTATACGATGACTTCGATATTGTTGTTTGTGATGTGGGCGCTTGTGGCAGCGA 986
Query 1034 TTCCTTGTCAAGACAGAGGTTTGCAAGTACATTTCAATGTTCCTAGGAATTACCAATGGG 1093
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 987 TTCCTTGTCAAGACAGAGGCTTGCAAGTGCATTTCAATGTTCCTAGGAATTACCAATGGG 1046
Query 1094 GAGGTTCGTTGATGTCGTTGCACGATAGGATCATTGAGGAATCGAAGAAGAGAGAGAGGA 1153
||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 1047 GAGGTTCGTTGATGTCGTTGCACGATAGGATTATTGAGGAATCGAAGAAGCGTGAGAGGA 1106
Query 1154 AGAATACATGTGGGTTGTTGAAAGAGATTCATCAGTTTGAGAAGACTTCAAGATTGATGA 1213
|||| || |||||||||||||||||||| ||||||||||||| || ||||||||||||||
Sbjct 1107 AGAACACTTGTGGGTTGTTGAAAGAGATACATCAGTTTGAGAGGAGTTCAAGATTGATGA 1166
Query 1214 ATGAGTTGGTTGATTCTGTTCAGTTTCCTTTGTCTGAAGAGAAAGAGATGGAAGTGAGAG 1273
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1167 ATGAGTTGGTTGATTCTGTTCAGTTTCCTTTGTCTGATGAGAAAGAGATGGAAGTGAGAG 1226
Query 1274 AGAGAGTTGAGGAATTGGGGAAGCTTCAAGAGGCTTTGAAGAATGGTTTGGATCCGTTTG 1333
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1227 AGAGGGTTGAGGAATTGGGGAAGCTTCAAGAAGCTTTGAAGAATGGTTTGGATCCGTTTG 1286
Query 1334 AGAGGAAAGTGAGGGAAGTGTTTCATCGGATTGTAAGAAGCAGAACAGAAGGTCTTGATA 1393
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1287 AGAGGAAAGTGAGGGAAGTGTTTCATCGGATTGTTCGAAGCAGAACAGAAGGTCTTGATA 1346
Query 1394 CTGTTGGAAAGCATCATGGTTCTGAATGATGTTTAT 1429
|||||||||||||||| |||||||||||||||||||
Sbjct 1347 CTGTTGGAAAGCATCACGGTTCTGAATGATGTTTAT 1382
> Ahg472100 jgi|Araly1|472100|fgenesh2_kg.1__2054__AT1G18740.1
Length=2168
Score = 466 bits (252), Expect = 3e-130
Identities = 814/1073 (76%), Gaps = 88/1073 (8%)
Strand=Plus/Plus
Query 349 GAGCTTGTTTCGTTTCAGAGAAAAGTTGCTGAGAGGTTTATCGATCTCAATGCGTCTAGT 408
||||| | ||||||||| ||| |||| || |||| || ||||||||||| || || |
Sbjct 244 GAGCTAGATTCGTTTCAAAGACAAGTCGCCGAGAAATTCATCGATCTCAA--CGCCT-CT 300
Query 409 TGTGAA-GATCTACTGTCTCTCGAATGGGTTGGGAAGCTTCTTGATTCGTTT-CTATCTT 466
| || || || || |||||||||||| | ||||||||||||||||| ||| || | ||
Sbjct 301 T-CAAACGACCTTCTCTCTCTCGAATGGATCGGGAAGCTTCTTGATTC-TTTCCTCTGTT 358
Query 467 GTCAAGAAGAGTTTCGTTCCATAGTCA-TCAATCATCG-T-TCGATGATTACT-AAA-CC 521
|||||||||||||||| | || || | |||| || || | || | || | || ||| |
Sbjct 359 GTCAAGAAGAGTTTCGAGCTATTGT-ATTCAACCACCGATCTC-A-GA-T-CTCAAAGTC 413
Query 522 ACCGATGGATCGATTGGTTTCAGATTACTTCGAGA-GAAGTGTTAAAGCTCTTGATGTTT 580
|||||||| || ||| |||||||||||||||| | | ||| | |||||||| ||||| |
Sbjct 414 TCCGATGGACCGTTTGATTTCAGATTACTTCGA-ACGGAGTATCAAAGCTCTCGATGTCT 472
Query 581 GTAACGCGATTCGTGATGGTGTTGAACAGATCCGTCAATGGCAGAAACTTATCGAGATTG 640
||||||| || || || || | |||||||||||||||||| |||||||| ||| ||
Sbjct 473 GTAACGCAATCCGCGACGGAATCGAACAGATCCGTCAATGGGAGAAACTTGCCGACATCA 532
Query 641 TAATTTGTGCTTTCAACAACAATGGAGGAGGAAGTAGTGGCAAGAGACCTCTTGGAGAAG 700
| || | ||| || | | | | |||| | | | || | |||||||
Sbjct 533 TTATCTCTGC-TT---------T-----A-G-A-TAGT--C-ACCGTCCGATCGGAGAAG 571
Query 701 GTCAGTTTCGTCGTGC-GAGGAAGACTTTGATTGAGTTAGCTATTGGTATGCTTGATGAG 759
| ||| | || || || || ||| || ||||||| ||||| || || ||||| || |||
Sbjct 572 GACAGCTCCGGCGAGCTAAGAAAG-CTCTGATTGATTTAGCAATCGGAATGCTCGACGAG 630
Query 760 AAGGATTCAT-CTTCT--AGCTCAGTGTCGTCTCAGCATCGTAACCGGTCTTTTGGAAGG 816
|| || |||| ||||| | | || | | | || ||||| ||||| || || |||| |
Sbjct 631 AAAGA-TCATCCTTCTGGAAC-CAATCTAG-CT---CATCGGAACCGTTCATTCGGAA-G 683
Query 817 A-ACAAGGAGCAGCTTCATCACCGAACAATCGGGCATTTCAGGTCGCTTTCTTGGAGTGT 875
| ||| || ||| ||| ||||| | || || |||||||| || ||||| ||||||||
Sbjct 684 AGTCAAAGA-CAG--TCACCACCGTTCGATTGGACATTTCAGATCTCTTTCCTGGAGTGT 740
Query 876 TTCGAGATCATGGTCTGCTTCTAAGCAACTACAAGCTATTGG-AAACAACTTAGCTACGC 934
||| ||||| ||||| |||||||||||| |||||||| |||| || |||||||| ||||
Sbjct 741 TTCAAGATCGTGGTCAGCTTCTAAGCAATTACAAGCT-TTGGCTAATAACTTAGCAACGC 799
Query 935 CTCGAGCTAGTGACATTACTGC-AACTAATGGTCTTA-TTGTTCCGGTTTATACAATGAC 992
|| || | | ||| | ||| | | |||||| ||| ||| |||||||| || |||||
Sbjct 800 CTAGACCAAACGACGTCGTTGCGAGC-AATGGT-TTAGCTGTACCGGTTTACACCATGAC 857
Query 993 TACGGTATTG-TTGTTTGTGATGTGGGCACTT-GTAGCTGCGATTCCTTGTCAAGACAGA 1050
| |||| ||| || ||||||||||||| || |||||||||||||||||||||||| |
Sbjct 858 TTCGGTTTTGCTT-TTTGTGATGTGGG-TTTTGGTAGCTGCGATTCCTTGTCAAGACCGT 915
Query 1051 GGTTTGCAAG-TACATTTCAATGTTCCTAGGAATTACCAATGGGGAGGTTC-GTTGATGT 1108
|| ||||||| || | ||| ||| |||||| ||| |||||||| || | | ||| ||||
Sbjct 916 GGATTGCAAGTTA-ACTTCTTTGTCCCTAGGCATTTCCAATGGGCAGCTCCGGTT-ATGT 973
Query 1109 CGTTGCACGATAGGATCATTGAGGAATCGAAGAAGA-GAGAGAGGAAGAATACATGTGGG 1167
|||||||||||| ||| |||||||||| ||| ||| |||| ||||||||| |||||
Sbjct 974 CGTTGCACGATAAGATTGTTGAGGAATCTAAG-AGACGAGATAGGAAGAATTGTTGTGGT 1032
Query 1168 TTG-TTGAAAGAGATTCATCA-GTTTGAGAAGACTTCAAGATTGATGAATGAGTTGGTTG 1225
||| || || |||||| || | | ||||||||| ||| || ||||||||||| ||| | |
Sbjct 1033 TTGCTT-AAGGAGATTGAT-ATGATTGAGAAGAGTTCGAGGTTGATGAATGAATTGATCG 1090
Query 1226 ATTCTG-TTCAGTTT-CCTTTGTCTGAAGAGAAAGAGATGGAAGTGAGAGAGAGAGTTGA 1283
|||| | |||| ||| || ||| ||| |||| ||||| || |||| | ||||||||||
Sbjct 1091 ATTC-GATTCA-TTTCCCGTTGAATGATCAGAAGGAGATTGAGGTGAAACAGAGAGTTGA 1148
Query 1284 GGA-ATTGGGGAAGCTTCAAGAGGCTTTG-AAGAATGGTTTGGATCCGTTTGAGAGGAAA 1341
|| || | || ||| || |||||| ||| ||||||||||||||||||||||||||
Sbjct 1149 TGAGCTT-GTTCAGGTTCGTGAAGCTTTGAAAG-ATGGTTTGGATCCGTTTGAGAGGAAA 1206
Query 1342 GTGAGGGAAGTGTTTC-ATCGGATTGTAAGAAGCAGAACAGA-AGGTCTTGAT 1392
|| || ||||| |||| |||||||||| |||||| |||| || || |||||||
Sbjct 1207 GTTAGAGAAGT-TTTCCATCGGATTGTGAGAAGCCGAACCGAGAG-TCTTGAT 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66505567770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5