BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74458.1
Length=523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316385 jgi|Araly1|316385|fgenesh1_pm.C_scaffold_2001418 346 1e-94
> Ahg316385 jgi|Araly1|316385|fgenesh1_pm.C_scaffold_2001418
Length=258
Score = 346 bits (187), Expect = 1e-94
Identities = 239/262 (91%), Gaps = 11/262 (4%)
Strand=Plus/Plus
Query 145 ATGTTCTTGGTTTTAGCTCTTCTCTATCTCATGATCTCATGGAAGCCTCTCCTAATCACT 204
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTTCTTGGTTTTAGCTCTTCTATATCTCATGATCTCATGGAAGCCTGTCCTAATCACT 60
Query 205 GCAAGACCTGAG-AA--ATCAACAG---ACTTTGAAACCAAGGGACAGGAATTGAATCGT 258
|||||| ||||| || |||||||| |||||||||||||||||||||||||||| |
Sbjct 61 GCAAGAACTGAGAAATCATCAACAGACCACTTTGAAACCAAGGGACAGGAATTGAA---T 117
Query 259 CAGATTAGCCATCTGGGACGTATTGAAAATGATCCTGAGAGAAGAA-AAGGGACAAGGAG 317
||||||||||| |||||||| ||||||| ||||||| || |||||| || ||||| |||
Sbjct 118 CAGATTAGCCACCTGGGACGCATTGAAACTGATCCTAAGGGAAGAACAA-GGACACGGAA 176
Query 318 GATGATGACCGTTGAGGATATTAACGATTATCCAGGATCCGGTGCTAACAACCGCCACAC 377
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GATGATGACCGTTGACGATATTAACGATTATCCAGGATCCGGTGCTAACAACCGCCACAC 236
Query 378 TCCTCACTGTTCTGATTGCTAA 399
|||||| |||||||||||||||
Sbjct 237 TCCTCATTGTTCTGATTGCTAA 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19039638911
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5