BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G74458.1 Length=523 Score E Sequences producing significant alignments: (Bits) Value Ahg316385 jgi|Araly1|316385|fgenesh1_pm.C_scaffold_2001418 346 1e-94 > Ahg316385 jgi|Araly1|316385|fgenesh1_pm.C_scaffold_2001418 Length=258 Score = 346 bits (187), Expect = 1e-94 Identities = 239/262 (91%), Gaps = 11/262 (4%) Strand=Plus/Plus Query 145 ATGTTCTTGGTTTTAGCTCTTCTCTATCTCATGATCTCATGGAAGCCTCTCCTAATCACT 204 ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 1 ATGTTCTTGGTTTTAGCTCTTCTATATCTCATGATCTCATGGAAGCCTGTCCTAATCACT 60 Query 205 GCAAGACCTGAG-AA--ATCAACAG---ACTTTGAAACCAAGGGACAGGAATTGAATCGT 258 |||||| ||||| || |||||||| |||||||||||||||||||||||||||| | Sbjct 61 GCAAGAACTGAGAAATCATCAACAGACCACTTTGAAACCAAGGGACAGGAATTGAA---T 117 Query 259 CAGATTAGCCATCTGGGACGTATTGAAAATGATCCTGAGAGAAGAA-AAGGGACAAGGAG 317 ||||||||||| |||||||| ||||||| ||||||| || |||||| || ||||| ||| Sbjct 118 CAGATTAGCCACCTGGGACGCATTGAAACTGATCCTAAGGGAAGAACAA-GGACACGGAA 176 Query 318 GATGATGACCGTTGAGGATATTAACGATTATCCAGGATCCGGTGCTAACAACCGCCACAC 377 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 GATGATGACCGTTGACGATATTAACGATTATCCAGGATCCGGTGCTAACAACCGCCACAC 236 Query 378 TCCTCACTGTTCTGATTGCTAA 399 |||||| ||||||||||||||| Sbjct 237 TCCTCATTGTTCTGATTGCTAA 258 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19039638911 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5