BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74460.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926827 jgi|Araly1|926827|scaffold_202388.1 1823 0.0
> Ahg926827 jgi|Araly1|926827|scaffold_202388.1
Length=1143
Score = 1823 bits (987), Expect = 0.0
Identities = 1091/1142 (96%), Gaps = 3/1142 (0%)
Strand=Plus/Plus
Query 16 CACACATTCAAATTTGGCGACATGAAGTTCTGCGCGATATTCGTGTTATTCATCGTTCTT 75
||| |||||| ||||||||||||||||||||||||||||||| | || || ||| |||||
Sbjct 1 CACGCATTCATATTTGGCGACATGAAGTTCTGCGCGATATTCATATTGTTTATCATTCTT 60
Query 76 GCAATCAACGGCTACGATTGCAAGATAGTCCAATTTATATTTGGAGATTCATTGTCTGAT 135
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GCAATCAACGGCTACGATTGCAAGATAGTCCAGTTTATATTTGGAGATTCATTGTCTGAT 120
Query 136 GTAGGCAACAATAAGAATCTACCTAGGAGTTTAGCGACGGCGAATCTGCCCTTTTACGGT 195
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GTAGGTAACAATAAGAATCTACCGAGGAGTTTAGCGACGGCGAATCTGCCCTTTTACGGT 180
Query 196 ATTGATTTTGGCAATGGTTTGCCTAATGGAAGGTTCACTAATGGCCGCACTGTTTCAGAC 255
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 ATTGATTTTGGCAATGGTTTGCCTAATGGAAGGTTCACTAACGGCCGCACTGTTTCAGAC 240
Query 256 ATTATAGGTGATAAAATTGGATTGCCAAGACCAGTAGCCTTCTTGGATCCATCAATGAAT 315
|||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 241 ATTATAGGTGATGAAATTGGATTGCCAAGACCAGTAGCCTTTTTGGATCCAACAATGAAT 300
Query 316 GAAGATGTAATACTTGAAAATGGAGTGAACTATGCTTCAGGAGGTGGTGGAATCTTGAAC 375
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGATGTAATACTTGAAAATGGAGTGAACTATGCTTCAGGAGGTGGTGGAATCTTGAAT 360
Query 376 GAAACTGGTGGTTATTTCATCCAAAGATTTTCGCTGTGGAAGCAAATAGAATTATTCCAA 435
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GAAACTGGCGGTTATTTCATCCAAAGATTTTCGCTATGGAAGCAAATAGAATTATTCCAA 420
Query 436 GGGACACAAGATGTAGTTGTGGCAAAGATAGGGAAAAAAGAAGCAGACAAGTTCTTTCAA 495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 GGGACACAAGATGTAGTTGTGGCAAAGATAGGGAAAAAAGAAGCAGACAAGTTCTTCCAA 480
Query 496 GATGCTCGATACGTCGTCGCTTTAGGCAGCAATGACTTCATTAACAACTATTTGATGCCT 555
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 GATGCTCGATACGTCGTCGCTTTAGGCAGCAATGACTTCATTAACAACTACTTGATGCCT 540
Query 556 GTCTATAGCGACTCTTGGAAATACAATGATCAAACCTTCGTCGACTACTTAATGGAAACA 615
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTCTATAGCGACTCTTGGAAATACAATGATCAAACCTTCGTCGACTACTTAATGGAAACT 600
Query 616 CTTGAATCTCAACTCAAGGTGTTACATAGTTTAGGAGCGAGGAAGCTAATGGTGTTTGGT 675
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 601 CTTGAATCTCAACTCAAGATGTTGCATAGTTTAGGAGCGAGGAAGCTAATGGTGTTTGGG 660
Query 676 TTAGGACCAATGGGTTGTATCCCACTGCAAAGAGCTCTAAGCCTGGATGGAAATTGTCAA 735
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 TTAGGACCAATGGGTTGTATCCCACTCCAAAGAGCTCTAAGCCTGGATGGAAATTGTCAA 720
Query 736 AACAAAGCGAGTAATCTTGCTAAGAGATTCAACAAAGCTGCCACCACAATGCTCCTAGAT 795
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 721 AACAAAGCGAGTAATCTTGCTAAGAAATTCAACAAAGCTGCCACCACAATGCTCCTAGAT 780
Query 796 CTCGAGACCAAGCTCCCTAACGCAAGCTACAGGTTTGGTGAAGCCTATGACCTCGTCAAC 855
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTCGAGGCCAAGCTCCCTAACGCAAGCTACAGGTTTGGTGAAGCCTATGACCTCGTCAAC 840
Query 856 GACGTCATCACTAACCCaaaaaaaTACGGGTTTGATAACTCGGATTCGCCGTGTTGCTCG 915
||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 841 GACATCATCACTAACCCTAAGAAATACGGGTTTGACAACTCGGATTCGCCGTGTTGCTCG 900
Query 916 TTCTACAGAATCCGGCCTGCGCTAACGTGTATTCCAGCGTCGACATTGTGTAAAGACAGA 975
||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||
Sbjct 901 TTCTACAGAATCCGGCCGGCGCTGACATGTATTCCGGCGTCGACATTGTGTAAAGACAGA 960
Query 976 AGTAAGTATGTGTTTTGGGATGAGTATCATCCCACCGATAAGGCTAACGAACTCGTCGCT 1035
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct 961 AGTAAGTATGTGTTTTGGGACGAGTATCATCCCACCGATAAGGCTAACGAGCTAGTTGCT 1020
Query 1036 AATATACTCATCAAAAGATTTGACTTCATGCGTGCCGATGACGGTATCTCCCATGCTCCA 1095
||||||||||||||||| ||||||||||||||| | |||||||||| ||||||||||||
Sbjct 1021 AATATACTCATCAAAAGGTTTGACTTCATGCGTTCTGATGACGGTACCTCCCATGCTCCT 1080
Query 1096 TCTCCCGCGCCGGATATTTCTCCTTCTTCCGACAATAACTGATCGGAATTACA-GTCTTA 1154
||||| ||||||| ||||||||||||| |||||| |||||||| | ||||| | ||||||
Sbjct 1081 TCTCCGGCGCCGGCTATTTCTCCTTCTCCCGACACTAACTGATTG-AATTA-ATGTCTTA 1138
Query 1155 AT 1156
||
Sbjct 1139 AT 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5