BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74480.1
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339639 jgi|Araly1|339639|fgenesh1_pg.C_scaffold_2001738 1391 0.0
> Ahg339639 jgi|Araly1|339639|fgenesh1_pg.C_scaffold_2001738
Length=897
Score = 1391 bits (753), Expect = 0.0
Identities = 853/901 (95%), Gaps = 8/901 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGATCACACAACCAAAGAACAGAAGTCATTCTCATTCCTAGCTCATTCTCCATCC 60
||||||||||||| |||||||||| ||||| |||||||||||||||||||||| || |||
Sbjct 1 ATGGCTGATCACAAAACCAAAGAAGAGAAGCCATTCTCATTCCTAGCTCATTCACCTTCC 60
Query 61 TTTGATCACAGCTCCTTAAGTTATCCTTTATTCGACTGGGAAGAAGATCTTCTTGCTCTC 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TTTGATCACAGCTCCTTAAGTTATCCTTTATTTGACTGGGAAGAAGATCTTCTTGCTCTC 120
Query 121 CAAGAAAACTCTGGCTCTCAAGCATTTCCTTTTACTACAACTTCTCTGCCTTTACCTGAT 180
||||||||||||| |||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 121 CAAGAAAACTCTGCCTCTCAAGGTTTTCCTTTGACTACAACTTCTCTGTCTTTACCTGAT 180
Query 181 CTTGAACCCTTGTCTGAAGATGTACTCAATTCATACAGCTCTGCGTCATGGAACGAAACA 240
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CTTGAACCCTTGTCTGAAGATGTACTCAATTCATACAGCTCTGTATCATGGAACGAAACA 240
Query 241 GAGCAAAACAGAGGAGATGGCGCTTCATCGGAGAAGAAGAGGGAAAATGGAACAGTGAAA 300
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 241 GAGCAAAACAGAGGAGATGGTGCTTCATCGGAGAAGAAGATGGAAAATGGAACAGTGAAA 300
Query 301 GAGACAACTAAGAAGAGGAAAATCAATGAGAGACACAGAGAACATAGCGTGAGAATCATC 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGACGACTAAGAAGAGGAAAATCAATGAGAGACACAGAGAACATAGCGTGAGAATCATC 360
Query 361 AGCGATATTACTACCTACACAACTAGTTCAGC-TCCAAC-GACATTGTC-AAAGGAAACT 417
|||||||||||||||||||||||||||||||| || ||| | |||| || |||| |||||
Sbjct 361 AGCGATATTACTACCTACACAACTAGTTCAGCATC-AACAG-CATTATCGAAAG-AAACT 417
Query 418 GTCTCTCGCTACTTCTACATGCCCATAACTCAGGCTGCAATAGCACTTAACGTTGGTTTA 477
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 418 GTCTCTCGCTACTTCTACATGCCCATAACTCAGGCTGCAATGGAACTTAACGTTGGTTTA 477
Query 478 ACTCTACTAAAAAGGAGATGTCGCGAATTGGGTATTCGCCGATGGCCTCATCGTAAACTT 537
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ACTCTTCTGAAAAGGAGATGTCGCGAATTGGGTATTCGCCGATGGCCTCATCGTAAACTC 537
Query 538 ATGAGC-TTAAACACTTTGATCAGTAACGTCAAGGAGCTGCAGAAGATGGAAGGCGAAGA 596
|||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 538 ATGAGCCTTAA-CACTTTGATCAGTAATGTCAAGGAGCTGCAGAAGACGGAAGGCGAAGA 596
Query 597 GAATGCAGAAAAACTGCAGGACGCGTTGGAGATGCTTGAGAAGGAGAAGAGGACAATTGA 656
||||||||||||||| ||||| || ||||||||||| ||||||||||||||||| |||||
Sbjct 597 GAATGCAGAAAAACTTCAGGAAGCATTGGAGATGCTCGAGAAGGAGAAGAGGACGATTGA 656
Query 657 GGATTTGCCGGATTTGGAGTTTAAGGACAAGACAAAGAGGCTAAGACAAGCTTGTTTCAA 716
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 657 GGAGTTACCGGATTTGGAGTTCAAGGACAAGACAAAGAGGCTAAGACAAGCTTGTTTCAA 716
Query 717 GGCTAACCACAAGAGGAAGAAGAAGAGAAGTCTCAAGTCCGATCAGTCTCAAGTACCCTC 776
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 717 GGCTAACCACAAGAGGAAGAAGAAGAGAAGTCTCAAGTCCGATCAGTTTCAAGTGCCCTC 776
Query 777 GTGTTCAAGCAGCGGATCAGTTCCTAGTGATGAGTCGGTTGATGAAGCAGGAATGGAGAG 836
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 777 ATGTTCAAGCAGCGGATCAGTCCCTAGTGATGAGTCGGTTGATGCAGCAGGAATGGAGAG 836
Query 837 TGATGAAGAAATGAAGTATCTCTTGTGTGGTTTCTCAAGTGAATTTACTAGTGGTTTGTG 896
|||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 837 TGATGAAGAAGTGAAGTATCTCTTGTGTGGTTTCTCAAGTGAGTTTAGTAGTGGTTTGTG 896
Query 897 A 897
|
Sbjct 897 A 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33243183624
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5