BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G74490.1 Length=1506 Score E Sequences producing significant alignments: (Bits) Value Ahg316389 jgi|Araly1|316389|fgenesh1_pm.C_scaffold_2001422 1890 0.0 > Ahg316389 jgi|Araly1|316389|fgenesh1_pm.C_scaffold_2001422 Length=1200 Score = 1890 bits (1023), Expect = 0.0 Identities = 1142/1201 (95%), Gaps = 2/1201 (0%) Strand=Plus/Plus Query 247 ATGGGGAATTGCTTTGAATCTTGTTCGAAGAGAAATGATAATGAGGACGATAATCTTGAC 306 |||||||||||||||| |||||| || |||| |||||||||||||||||||||| ||||| Sbjct 1 ATGGGGAATTGCTTTGGATCTTGCTCAAAGATAAATGATAATGAGGACGATAATGTTGAC 60 Query 307 TCCTCAGTGAACTCGAAACCCTTTTCACGAGCTAATAGTGATACTGGAAGAAGCTCGAAT 366 |||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 61 TCCTCAGTGAACTCCAAACCCTTTTCACGAGCTGATAGTGGTACTGGAAGAAGCTCGAAT 120 Query 367 CTGTCATATCCATGGAGTTTAAAACCTCTCATTACAAGAAAATGTGAAGCTATCAGT-GC 425 ||||||||||||||||||||||||||||||||| |||||||||||||||||| || | | Sbjct 121 CTGTCATATCCATGGAGTTTAAAACCTCTCATTGCAAGAAAATGTGAAGCTAACA-TCAC 179 Query 426 TCTACCTCCACCGCACAAAGAAGGAGACATAATGCATTCTCAATATTTGAAGTCCTTTAC 485 ||||||| |||||| | ||||||||| |||||||||||||||||||||||||||||||| Sbjct 180 TCTACCTGCACCGCGCGGAGAAGGAGAAATAATGCATTCTCAATATTTGAAGTCCTTTAC 239 Query 486 CTTAGATGAGCTAAAGAATGCTACAGGAAACTTCTGTCCAGAGAGTCTAATTGGAGAAGG 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 240 CTTAGATGAGCTAAAGAATGCTACAGGAAACTTCTGTCCAGAGAGTCTAATTGGGGAAGG 299 Query 546 AGGGTTCGGGTTTGTTCACAAAGGCTGTATTAATGGTGGACCTGGAATCGAACTCGCGGT 605 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| Sbjct 300 AGGGTTCGGGTTTGTTCACAAGGGCTGTGTTAATGGTGGACCTGGAATCGAACTTTCGGT 359 Query 606 TGCTGTAAAGAAGCTTAAAACCGAAGGGCTTCAGGGACATAAGGAGTGGCTGAGGGAAGT 665 |||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 360 TGCTGTGAAGAAGCTTAAAACTGGAGGGCTTCAGGGACATAAGGAGTGGCTGAGGGAAGT 419 Query 666 GAATTATCTTGGAAGATTGCATCATCCGAATCTAGTGAAACTGATTGGTTACTCCTTGGA 725 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 420 GAATTATCTTGGAAGATTGCATCATCCTAATCTAGTGAAACTGATTGGATACTCCTTGGA 479 Query 726 AAACGAACACCGCCTTTTGGTTTACGAGCATTTGCCTAATGGTAGTCTTGAGAATCATTT 785 ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 480 AAACGAACACCGCCTTTTGGTTTACGAGCATATGCCTAATGGTAGTCTTGAAAATCATTT 539 Query 786 GTTTGAAAGGAGTTCCAGTGTGCTTTCTTGGTCACTGCGTATGAAAGTCGCGATTGGTGC 845 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GTTTGAAAGGGGTTCCAATGTGCTTTCTTGGTCACTGCGTATGAAAGTCGCGATTGGTGC 599 Query 846 TGCTCGAGGGCTATGTTTTTTGCATGAAGCTAATGACCAAGTCATTTACAGAGACTTCAA 905 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 600 TGCTCGAGGACTATGTTTTTTGCACGAAGCTAATGACCAAGTCATTTACAGAGACTTCAA 659 Query 906 AGCAGCAAATATCCTTCTCGATTCAGGATTCAACGCCAAACTCTCAGACTTTGGATTGGC 965 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 660 AGCAGCAAATATCCTTCTCGATTCAGAATTCAACGCCAAACTCTCAGACTTTGGATTAGC 719 Query 966 CAAAGAAGGTCCAAAAGATAACCGTTCACATGTGACAACAGAAGTCATGGGTACAGAAGG 1025 ||||||||||||||| || ||||||||||| |||||||| |||||||||||||| ||||| Sbjct 720 CAAAGAAGGTCCAAAGGACAACCGTTCACACGTGACAACCGAAGTCATGGGTACTGAAGG 779 Query 1026 TTACGCAGCTCCAGAGTATCTAGCAACAGGTCATCTAACAACGAAATGTGATGTCTACAG 1085 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 780 TTACGCAGCTCCAGAATATCTAGCAACAGGTCATCTAACAACAAAATGTGATGTCTACAG 839 Query 1086 CTTCGGTGTAGTGTTGCTAGAGATTCTCTCTGGGCGTCGAGTCATAGACAAATCCAAATC 1145 ||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| | Sbjct 840 CTTCGGTGTAGTGTTGCTAGAGATTCTATCTGGACGTCGAGTCATAGACAAAACCAAAGC 899 Query 1146 ACGGGAAGAAGAAAACCTAGTGGATTGGGCAACACCTTACTTGCGAGACAAGCGAAAAGT 1205 |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 900 ACGGGAAGAAGAAAGCCTAGTGGAATGGGCAACACCTTACTTGCGAGACAAGCGAAAAGT 959 Query 1206 GTTTAGGATAATGGACACAAAGCTTGTGGGTCAATACCCTCAGAAAGCAGCGTTTATGAT 1265 |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 960 GTTTAGGATAATGGACACAAAGCTTGTGGGTCAATACCCTAAGAAAGCAGCATTTATGAT 1019 Query 1266 GTCTTTCTTGGCTTTACAATGTATCGGAGATGTTAAGGTTAGACCATCGATGCTTGAGGT 1325 |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 1020 GTCTTTCTTGGCTTTACAATGTATCGGAGAGGTTAAGGTTAGACCATCGATGATTGAGGT 1079 Query 1326 CGTATCTCTTCTTGAGAAAGTTCCAATTCCAAGACATAGAAAGAGTAGAAGCAAAGGTTT 1385 | |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 1080 CTTATCTCTTCTTGAGAAAGTTCCGATTCCAAGACATAGAAAGAGTAGAAGCAGAGGTTT 1139 Query 1386 TGCTTGTACTAACTCTGCTTCTATGCCTTCAAAACGGTTTCTCAGACATCCTAAGGACTa 1445 ||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 1140 TGCTTATACTAACTCTGCTTCTATGTCTTCAAAACGGTTTCTCAGACACCCTAAGGACTA 1199 Query 1446 a 1446 | Sbjct 1200 A 1200 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56373562600 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5