BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74490.1
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316389 jgi|Araly1|316389|fgenesh1_pm.C_scaffold_2001422 1890 0.0
> Ahg316389 jgi|Araly1|316389|fgenesh1_pm.C_scaffold_2001422
Length=1200
Score = 1890 bits (1023), Expect = 0.0
Identities = 1142/1201 (95%), Gaps = 2/1201 (0%)
Strand=Plus/Plus
Query 247 ATGGGGAATTGCTTTGAATCTTGTTCGAAGAGAAATGATAATGAGGACGATAATCTTGAC 306
|||||||||||||||| |||||| || |||| |||||||||||||||||||||| |||||
Sbjct 1 ATGGGGAATTGCTTTGGATCTTGCTCAAAGATAAATGATAATGAGGACGATAATGTTGAC 60
Query 307 TCCTCAGTGAACTCGAAACCCTTTTCACGAGCTAATAGTGATACTGGAAGAAGCTCGAAT 366
|||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 61 TCCTCAGTGAACTCCAAACCCTTTTCACGAGCTGATAGTGGTACTGGAAGAAGCTCGAAT 120
Query 367 CTGTCATATCCATGGAGTTTAAAACCTCTCATTACAAGAAAATGTGAAGCTATCAGT-GC 425
||||||||||||||||||||||||||||||||| |||||||||||||||||| || | |
Sbjct 121 CTGTCATATCCATGGAGTTTAAAACCTCTCATTGCAAGAAAATGTGAAGCTAACA-TCAC 179
Query 426 TCTACCTCCACCGCACAAAGAAGGAGACATAATGCATTCTCAATATTTGAAGTCCTTTAC 485
||||||| |||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 TCTACCTGCACCGCGCGGAGAAGGAGAAATAATGCATTCTCAATATTTGAAGTCCTTTAC 239
Query 486 CTTAGATGAGCTAAAGAATGCTACAGGAAACTTCTGTCCAGAGAGTCTAATTGGAGAAGG 545
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 CTTAGATGAGCTAAAGAATGCTACAGGAAACTTCTGTCCAGAGAGTCTAATTGGGGAAGG 299
Query 546 AGGGTTCGGGTTTGTTCACAAAGGCTGTATTAATGGTGGACCTGGAATCGAACTCGCGGT 605
||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||
Sbjct 300 AGGGTTCGGGTTTGTTCACAAGGGCTGTGTTAATGGTGGACCTGGAATCGAACTTTCGGT 359
Query 606 TGCTGTAAAGAAGCTTAAAACCGAAGGGCTTCAGGGACATAAGGAGTGGCTGAGGGAAGT 665
|||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 360 TGCTGTGAAGAAGCTTAAAACTGGAGGGCTTCAGGGACATAAGGAGTGGCTGAGGGAAGT 419
Query 666 GAATTATCTTGGAAGATTGCATCATCCGAATCTAGTGAAACTGATTGGTTACTCCTTGGA 725
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 420 GAATTATCTTGGAAGATTGCATCATCCTAATCTAGTGAAACTGATTGGATACTCCTTGGA 479
Query 726 AAACGAACACCGCCTTTTGGTTTACGAGCATTTGCCTAATGGTAGTCTTGAGAATCATTT 785
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 480 AAACGAACACCGCCTTTTGGTTTACGAGCATATGCCTAATGGTAGTCTTGAAAATCATTT 539
Query 786 GTTTGAAAGGAGTTCCAGTGTGCTTTCTTGGTCACTGCGTATGAAAGTCGCGATTGGTGC 845
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTTTGAAAGGGGTTCCAATGTGCTTTCTTGGTCACTGCGTATGAAAGTCGCGATTGGTGC 599
Query 846 TGCTCGAGGGCTATGTTTTTTGCATGAAGCTAATGACCAAGTCATTTACAGAGACTTCAA 905
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 TGCTCGAGGACTATGTTTTTTGCACGAAGCTAATGACCAAGTCATTTACAGAGACTTCAA 659
Query 906 AGCAGCAAATATCCTTCTCGATTCAGGATTCAACGCCAAACTCTCAGACTTTGGATTGGC 965
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 660 AGCAGCAAATATCCTTCTCGATTCAGAATTCAACGCCAAACTCTCAGACTTTGGATTAGC 719
Query 966 CAAAGAAGGTCCAAAAGATAACCGTTCACATGTGACAACAGAAGTCATGGGTACAGAAGG 1025
||||||||||||||| || ||||||||||| |||||||| |||||||||||||| |||||
Sbjct 720 CAAAGAAGGTCCAAAGGACAACCGTTCACACGTGACAACCGAAGTCATGGGTACTGAAGG 779
Query 1026 TTACGCAGCTCCAGAGTATCTAGCAACAGGTCATCTAACAACGAAATGTGATGTCTACAG 1085
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 TTACGCAGCTCCAGAATATCTAGCAACAGGTCATCTAACAACAAAATGTGATGTCTACAG 839
Query 1086 CTTCGGTGTAGTGTTGCTAGAGATTCTCTCTGGGCGTCGAGTCATAGACAAATCCAAATC 1145
||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| |
Sbjct 840 CTTCGGTGTAGTGTTGCTAGAGATTCTATCTGGACGTCGAGTCATAGACAAAACCAAAGC 899
Query 1146 ACGGGAAGAAGAAAACCTAGTGGATTGGGCAACACCTTACTTGCGAGACAAGCGAAAAGT 1205
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 900 ACGGGAAGAAGAAAGCCTAGTGGAATGGGCAACACCTTACTTGCGAGACAAGCGAAAAGT 959
Query 1206 GTTTAGGATAATGGACACAAAGCTTGTGGGTCAATACCCTCAGAAAGCAGCGTTTATGAT 1265
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 960 GTTTAGGATAATGGACACAAAGCTTGTGGGTCAATACCCTAAGAAAGCAGCATTTATGAT 1019
Query 1266 GTCTTTCTTGGCTTTACAATGTATCGGAGATGTTAAGGTTAGACCATCGATGCTTGAGGT 1325
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1020 GTCTTTCTTGGCTTTACAATGTATCGGAGAGGTTAAGGTTAGACCATCGATGATTGAGGT 1079
Query 1326 CGTATCTCTTCTTGAGAAAGTTCCAATTCCAAGACATAGAAAGAGTAGAAGCAAAGGTTT 1385
| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1080 CTTATCTCTTCTTGAGAAAGTTCCGATTCCAAGACATAGAAAGAGTAGAAGCAGAGGTTT 1139
Query 1386 TGCTTGTACTAACTCTGCTTCTATGCCTTCAAAACGGTTTCTCAGACATCCTAAGGACTa 1445
||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1140 TGCTTATACTAACTCTGCTTCTATGTCTTCAAAACGGTTTCTCAGACACCCTAAGGACTA 1199
Query 1446 a 1446
|
Sbjct 1200 A 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56373562600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5