BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74500.1
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476585 jgi|Araly1|476585|fgenesh2_kg.2__1715__AT1G74500.1 737 0.0
> Ahg476585 jgi|Araly1|476585|fgenesh2_kg.2__1715__AT1G74500.1
Length=572
Score = 737 bits (399), Expect = 0.0
Identities = 526/581 (91%), Gaps = 33/581 (6%)
Strand=Plus/Plus
Query 1 ATACTATCAACTTTtctctatctatctctctctcttctTTTTCCGGCATAACTTCTGTGT 60
|||||||||||| ||||| || | |||||||||| |||||||||||||||| |||||
Sbjct 1 ATACTATCAACTCTTCTC--TC---C-CTCTCTCTTCCTTTTCCGGCATAACTTGTGTGT 54
Query 61 TACCCTAAACTCCATAACCTGTTTCACCG----A-TAAAGTGCCTTTGCTTCT-ATCTCT 114
|||||||||||||||| ||||||||| || | ||||||||||||||| || || |||
Sbjct 55 TACCCTAAACTCCATATCCTGTTTCATCGATAAATTAAAGTGCCTTTGCTACTAATATCT 114
Query 115 GTCACTCTTACTACTTGTTGAACAAT-ATTCTAC-----aaaaaaaTGTCGGGAAGAAGA 168
||||||||||||||||| ||| ||| |||| || |||||||||||||||||||||
Sbjct 115 ATCACTCTTACTACTTGTCGAATAATAATTCAACAAAAAAAAAAAATGTCGGGAAGAAGA 174
Query 169 TCACGTTCGAGGCAATCATCAGGAACTTCAAGGATCTCAGAAGATCAAATCAATGATCTG 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TCACGTTCGAGGCAATCATCAGGAACTTCAAGGATCTCAGAAGATCAAATCAATGATCTC 234
Query 229 ATTATCAAGTTGCAACAGCTTCTTCCTGAGCTCAGGGACAGTCGTCGTTCCGACAAGGTT 288
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 235 ATTATCAAGTTGCAACAGCTTCTTCCTGAGCTCAGGGACAGTCGTCGCTCCGACAAGGTT 294
Query 289 TCAGCAGCGAGGGTGTTACAAGATACGTGCAACTACATACGGAATCTGCATAGAGAGGTT 348
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 295 TCAGCAGCGAGGGTGTTACAAGATACGTGCAACTACATAAGGAATCTGCATAGAGAGGTT 354
Query 349 GATGATCTAAGTGAGAGGCTATCTGAGTTACTAGCAAACTCAGACACTGCACAAGCTGCT 408
|||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||
Sbjct 355 GATGATCTAAGTGAGAGGTTATCTGAGTTACTTGCAAACACAGACACTGCACAAGCTGCT 414
Query 409 TTAATCAGAAGCTTACTTACCCAATAATTCCTATCTAt-----ctt-tt-t-cttcttct 460
|||||||||||||||||||||||||||||||||||| | ||| || | ||||||||
Sbjct 415 TTAATCAGAAGCTTACTTACCCAATAATTCCTATCTTTTTGTTCTTCTTCTTCTTCTTCT 474
Query 461 tctttttt-ttgtttactataataataataata---gtttgcgggtttttttttCTATAG 516
|||||||| |||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 475 TCTTTTTTATTGTTTACTATAATAATAATAATAATAGTTTGCGGATTGATTTTTCTATAG 534
Query 517 ATGTTGATGACCTTATAAACGTTTAATGATACGAGTTCGTC 557
||| ||||||||||||||||| |||||||||||||||||
Sbjct 535 ATG---ATGACCTTATAAACGTTGAATGATACGAGTTCGTC 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20375084526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5