BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74510.2
Length=2189
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476586 jgi|Araly1|476586|fgenesh2_kg.2__1716__AT1G74510.1 2163 0.0
> Ahg476586 jgi|Araly1|476586|fgenesh2_kg.2__1716__AT1G74510.1
Length=1843
Score = 2163 bits (1171), Expect = 0.0
Identities = 1345/1428 (94%), Gaps = 15/1428 (1%)
Strand=Plus/Plus
Query 506 GCATCCATCATGTTGGAGGCTCCGAGTTATCTGGTGTCAAGGGACTTACCATCTTCATGT 565
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 GCATTCATTATGTTGGAGGCTCCGAGTTATCTGGTGTCAAGGGACTTACCATCTTCATGT 288
Query 566 GAGGAAGAGAGCAAGTGGATATACAATGCACACTGTGTGCTTCAGCTCTCCCT-AAGGAA 624
||||||||||||||||||||||| || |||||||||||||||||||||||| | || |||
Sbjct 289 GAGGAAGAGAGCAAGTGGATATATAACGCACACTGTGTGCTTCAGCTCTCCTTGAA-GAA 347
Query 625 GC-GTTTGTTGGATGATACTGATGTAGAAGGAAGTTCCGCTAAGAAAATGTTACGGGTTG 683
| |||| ||||||| ||| |||| ||||||||| |||||||||||| |||| || ||||
Sbjct 348 ACGGTTT-TTGGATGCTACCGATGAAGAAGGAAGCTCCGCTAAGAAACTGTTGCGCGTTG 406
Query 684 ATCATGGAAGCAGAGGTGAATCTGACAAGATTACAGATAGTCTTCAGCTTGCTAAAACCT 743
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 407 ATCATGGAAGCAGAGGTGAATCTGAGAAGATTACAGATATTCTTCAGCTTGCTAAAACCT 466
Query 744 ATCAGAGCTCTAACCAGAGTCAACAAGGTGGTGGTGGTGATCAACAGAGTTCACCAGTTA 803
||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 467 ATCAGAGGTCTAACCAGAGTCAACAA------GGTGGTGATCAACAGAGTTCACCGGTTA 520
Query 804 CTCGGCTTGACCAAAACGCGCTTCTCAACTGCTTGGCTCACTGTTCGTTATCTGATTTCG 863
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 521 CTCGGCTTGACCAAAACGCACTTCTCAACTGCTTGGCTCACTGTTCGTTGTCTGATTTCG 580
Query 864 GGTCTATAGCGTCGACGAATAGAACCTTCCGCTCGTTGATTAAGGACAGCGAGTTGTATA 923
|||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 581 GGTCTATAGCCTCTACGAATAAAACCTTCCGCTCGTTGATTAAGGACAGCGAGTTGTATA 640
Query 924 GGTTGAGACGGGCAAAGGGTATTGTGGAGCATTGGATTTACTTCTCTTGCAGGCTCTTAG 983
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 641 GGTTGAGACGGGCAAAGGGTATTGTGGAGCATTGGATTTACTTCTCTTGCAGGCTCTTGG 700
Query 984 AATGGGAGGCTTATGATCCTAATGGAGATCGCTGGTTACGTGTACCGAAAATGACATTCA 1043
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 701 AATGGGAAGCTTATGATCCAAATGGAGATCGCTGGTTACGTGTACCGAAAATGACATTTA 760
Query 1044 ACGAGTGTTTCATGTGTTCGGATAAAGAGTCTCTGGCGGTTGGCACCGAGCTTCTTGTTT 1103
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 ATGAATGTTTTATGTGTTCGGATAAAGAGTCTCTGGCGGTTGGCACCGAGCTTCTTGTTT 820
Query 1104 TCGGAAAAGAGATCATGTCTCATGTGATTTACCGATATAGCATCTTAACCAATACATGGA 1163
| || |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 821 TTGGTAAAGAGATCATGTCCCATGTGATTTACCGATATAGTATCTTGACCAATACATGGA 880
Query 1164 CATCGGGTATGCAAATGAATGTCCCGAGGTGCTTGTTTGGATCAGCGAGTCTAGGCGAGA 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 CATCGGGTATGCAAATGAATGTCCCGAGGTGCTTGTTTGGATCAGCGAGTCTAGGCGAGA 940
Query 1224 TCGCGGTTATAGCTGGAGGATGTGATCCGCGTGGGAGGATACTGAGTTCTGCAGAGCTTT 1283
|||||||||||||||||||||||||||| | |||| ||||| |||| || ||||||||||
Sbjct 941 TCGCGGTTATAGCTGGAGGATGTGATCCTCATGGGCGGATATTGAGCTCGGCAGAGCTTT 1000
Query 1284 ATAACTCTGAAACTGGGGAATGGACGGTCATCCCGAGCATGAACAAAGCGAGGAAAATGT 1343
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1001 ATAACTCGGAAACTGGGGAATGGACGGTCATCCCGAGCATGAACAAAGCTAGGAAAATGT 1060
Query 1344 GCTCGAGCGTGTTCATGGATGGGAATTTCTATTGCATTGGAGGTATCGGAGAGGGAAACT 1403
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 GCTCTAGCGTGTTCATGGACGGGAATTTCTATTGCATTGGAGGTATCGGAGAGGGAAACT 1120
Query 1404 CGAAGATGCTATTGTGCGGTGAAGTCTATGATCTGAAGAAGAAGACATGGACATTGATAC 1463
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 CGAAGATGCTAATGTGCGGTGAAGTCTATGATCTGAAGAAGAAGACATGGACATTGATAC 1180
Query 1464 CTAACATGTTACCTGAAAGAAGCAGTGGAGGTGGAGGAGATCAAGCAAAAGAGATTGCTG 1523
||||||||||||| |||||||||| ||||||||||||||||| |||| |||||||| |
Sbjct 1181 CTAACATGTTACCAGAAAGAAGCAACGGAGGTGGAGGAGATCAGGCAACGGAGATTGCCG 1240
Query 1524 CTGCAACAGCGGCTTCAGAGGCTCCACCGCTTGTAGCAGTTGTAAAAGACGAGCTTTATG 1583
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1241 CTGCAACAGCGGCCTCAGAGGCTCCACCGCTTGTAGCAGTTGTAAAAGACGAGCTATATG 1300
Query 1584 CTGCGAATTACGCGCAGCAAGAGGTGAAG-AAATACGATAAAAGGCTTAATGTATGGAAT 1642
|||| ||||||||||||||||| || ||| |||||||||||||||| |||||||||||||
Sbjct 1301 CTGCAAATTACGCGCAGCAAGAAGT-AAGGAAATACGATAAAAGGCGTAATGTATGGAAT 1359
Query 1643 AAGGTAGGGAATTTGCCAGAGAGGGCTTCTTCGATGAACGGTTGGGGAATGGCGTTTAGG 1702
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1360 AAAGTAGGGAATTTGCCAGAGAGGGCTTCTTCGATGAACGGTTGGGGAATGGCGTTTCGA 1419
Query 1703 GCTTGTGGGGATCAGTTAGTGGTGGTTGGAGGACCTAGGGCAATAGGAGGAGGGTTTATA 1762
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1420 GCTTGCGGGGATCAGTTAGTGGTGGTTGGAGGACCTAGGGCAATAGGAGGAGGGTTCATA 1479
Query 1763 GAGATCAATGCTTGTGTCCCAAGTGAAGGAACACAACTGCATTGGAGAGTTCTTGCTTCT 1822
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1480 GAGATCAATGCTTGTGTCCCAAGCGAAGGAACACAACTGCATTGGAGAGTTCTTGCTTCT 1539
Query 1823 AAGCCATCGGGAAACTTTGTGTATAATTGTGCGGTGATGGGATGTTGATGAAGAAGACTT 1882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 AAGCCATCGGGAAACTTTGTGTATAATTGTGCGGTGATGGGATGTTGATGAAGAAGACTT 1599
Query 1883 GAGAGAGCCATTTCAAAGTTATTGACTTCTTTGTTAGACTT-Attttc 1929
||||| ||||||||||||||||||||| ||| || | || ||||||
Sbjct 1600 GAGAG--CCATTTCAAAGTTATTGACTTTTTTTTTGGGTTTTATTTTC 1645
Score = 320 bits (173), Expect = 3e-86
Identities = 203/217 (94%), Gaps = 3/217 (1%)
Strand=Plus/Plus
Query 1960 TTTGGGTCTTCGTTTCATGATTGGGGTCAAGAGAGTCTCTCTCTGTTTTCTTCTTTGTCT 2019
||||||| || ||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 1630 TTTGGGTTTTATTTTCATGATTGGGGTCAAGAGAG--TCTCTCTATCTTCTTCTTTGTCT 1687
Query 2020 TTGTGGGATTATTGTTGTTGTTCAGGTATAATCTGGAACTGAAAAAGTTTCAATAAATTT 2079
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1688 TTGTGGGATTATTGTTGTTGTTCAGGTATAATCTGGAACTGAAAA-GTTTCAATAAATTT 1746
Query 2080 GAAGAAGGTTAAGAACAAGCATCATGTTGTCTTGTCTCTCTCAACATTGTTATTTTGTAA 2139
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1747 GAAGAAGATTAAGAACAAGCATCATCTTGTCTTGTCTCTCTCAACATTGTTATTTTGTAA 1806
Query 2140 TTTGTTTCCATTGTTACATTCCTTCAAAATAAATTTT 2176
|||||||||||||||||| || || | ||||||||||
Sbjct 1807 TTTGTTTCCATTGTTACACTCTTTTAGAATAAATTTT 1843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82389199935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5