BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74520.1
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476588 jgi|Araly1|476588|fgenesh2_kg.2__1718__AT1G74520.1 1153 0.0
> Ahg476588 jgi|Araly1|476588|fgenesh2_kg.2__1718__AT1G74520.1
Length=813
Score = 1153 bits (624), Expect = 0.0
Identities = 761/823 (92%), Gaps = 26/823 (3%)
Strand=Plus/Plus
Query 6 ATTAAAAAGTTAAAAACTTTCAACAGGTCTACCACACAATCATTCGTTCTCTCTCTCAAA 65
|||||||||||||||||||||||||| ||||||||||||| ||| ||| |||||||
Sbjct 2 ATTAAAAAGTTAAAAACTTTCAACAGCTCTACCACACAATTATT-ATTCGCTCTCTC--T 58
Query 66 GTCTCAATC-CATCTC-CAGAGAG--T--A-GTGTGTTTTTAGTGGAGGAAGAATCAGAT 118
|||| || | |||| | || || | | | | ||||||||| ||||||||||||||
Sbjct 59 CTCTCTCTCTC-TCTCTCTGAAAGTCTCCATCTCTATTTTTAGTGTAGGAAGAATCAGAT 117
Query 119 TCAAAAGCCAAAATCAAAGCTTGGTGATGGGATCTGGAGCTGGCAATTTCCTCAAGGTTC 178
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 118 TC-AAAGCCAAAATCAAAGCTTGGTGATGGGATCTGGAGCTGGAAATTTCCTCAAGGTTC 176
Query 179 TTCTCAGGAACTTCGATGTTCTTGCTGGGCCTGTGGTTAGTCTCGTTTATCCTCTATATG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TTCTCAGGAACTTCGATGTTCTTGCTGGGCCTGTGGTTAGTCTCGTTTATCCTCTATATG 236
Query 239 CTTCAGTTCAAGCGATTGAAACTCAATCTCATGCTGATGACAAACAATGGCTAACTTATT 298
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 237 CTTCAGTCCAAGCGATTGAAACTCAATCTCACGCTGATGACAAACAATGGCTAACTTATT 296
Query 299 GGGTCCTTTATTCATTACTTACACTCATCGAGCTCACATTCGCCAAACTCATCGAATGGT 358
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGGTCCTTTATTCTTTACTTACACTCATCGAGCTCACATTCGCCAAACTCATCGAATGGT 356
Query 359 TACCGATATGGTCATACATGAAGCTGATCTTGACTTGCTGGCTTGTTATTCCCTACTTTA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TACCGATATGGTCATACATGAAGCTGATCTTGACTTGCTGGCTTGTTATTCCCTACTTTA 416
Query 419 GTGGCGCTGCTTATGTCTATGAACATTTTGTGAGACCGGTGTTTGTTAACCCTCGGAGCA 478
| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 417 GCGGCGCTGCGTATGTCTATGAACATTTTGTGAGACCTGTGTTTGTTAACCCACGGAGCA 476
Query 479 TTAACATTTGGTATGTGCCAAAGAAGATGGATATCTTCAGAAAACCAGACGATGTGTTAA 538
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 477 TTAACATTTGGTATGTGCCAAAGAAGATGGATATCTTCAGAAAGCCAGACGATGTGCTAA 536
Query 539 CAGCTGCTGAGAAGTACATTGCAGAGAATGGACCTGATGCTTTTGAGAAGATCTTAAGCC 598
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 537 CAGCTGCAGAGAAGTACATTGCTGAGAATGGACCTGATGCTTTTGAGAAGATCTTAAGCC 596
Query 599 GGGCTGATAAATCAAAAAGATATAATAAGCATGAATATGAAAGCTATGAAACGATGTATG 658
|||| |||||||||| ||||||||| | |||||| |||||||||||||||| |||||||
Sbjct 597 GGGCCGATAAATCAAGAAGATATAA-A--CATGAACATGAAAGCTATGAAACAATGTATG 653
Query 659 GTGAGGGTTATCAGTACTAAGAGAA-AT--TTGAAAAAGCTTTTAATTTTAGAATGTGTG 715
|||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 654 GTGAGGGTTATCGGTACTAAGAGAAGAAACTTGAAAA-GCTTTTAATTTTAGAATGTGTG 712
Query 716 AAGCAA-CTTCATGTCTTTGTT---GTTTGTTTATGCTTC-CTTTTTGTGGATCTCTCTC 770
|||||| || |||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 713 AAGCAAGCT-CATGTCGTTGTTCTTGTTTGTTTATGCTTCTCTTTTTGTGGATCTCTCTC 771
Query 771 GTGTAAAAAAGTTGCTAATTAAAATAAAGATGCTTTCTGCTCC 813
|||||||||||||| |||||||| | |||||||||| ||||||
Sbjct 772 GTGTAAAAAAGTTGATAATTAAA-TCAAGATGCTTTATGCTCC 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30040858596
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5