BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74530.3
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476589 jgi|Araly1|476589|fgenesh2_kg.2__1719__AT1G74530.3 1517 0.0
> Ahg476589 jgi|Araly1|476589|fgenesh2_kg.2__1719__AT1G74530.3
Length=1107
Score = 1517 bits (821), Expect = 0.0
Identities = 1033/1130 (91%), Gaps = 36/1130 (3%)
Strand=Plus/Plus
Query 53 AACAGAGCTTGACGTTAATGGAGAAAAGACTAATGGAG-TTTCCCAGGAAA-CAAAACAA 110
||||||||||| ||||||||| | | || ||||||||| |||||| | ||| ||| ||||
Sbjct 1 AACAGAGCTTGCCGTTAATGGCG-ACAGTCTAATGGAGATTTCCC-GAAAAGCAAGACAA 58
Query 111 AAGGAGAAATGGCGACATCGACAACGTCTGCGATTAGGGCACCGAATTGGAGAACCGCTG 170
||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| | ||
Sbjct 59 AAGGAGAAATGGCGACAGCGACGACATCTGCGATTAGGGCACCAAATTGGAGAACTGTTG 118
Query 171 TGTTGTTCTGGACCATCTCTCTCACTATCTTCTACTCTCTTTTCCAAATGGGTATTCGAA 230
|||| |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 119 TGTTATTCTGGACTATCTCTCTCACTATTTTCTACTCTCTTTTCCAAATGGGTCTTCGAA 178
Query 231 ATTCGCCATCCACTTCATCTCCTTCATCAGATTCCTTTGTCTCCTATGCGGAGCAAAGTA 290
|||||||||| ||||| | | |||||||||||||||||| |||||||||||||||| |
Sbjct 179 ATTCGCCATCTTCTTCA--T-CATCATCAGATTCCTTTGTCACCTATGCGGAGCAAAGCA 235
Query 291 CTAGGTTGTACAATAAGATGGAACAGGATTTACAAGAAAACGGACCCG-TGTTTC-TTAA 348
| |||||||| |||||||||||| |||| |||||||||||||| ||| || ||| ||||
Sbjct 236 CAAGGTTGTATGATAAGATGGAACGGGATATACAAGAAAACGGA-CCGCTG-TTCTTTAA 293
Query 349 ACAAGGTGAAACGTCTCAGTCATTGTCACTTTCAGATCTCTTCACACTGAAAGATGGAAA 408
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 294 ACAAGGTGAAACGTCTCAGTCGTTGTCACTTTCTGATCTCTTTACACTGAAAGATGGAAA 353
Query 409 GATAGCACCTGTCCTTAAGGTTGCGAATCCCCCTGTGCGAGCTAATGTATTACATCTCAG 468
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GATATCACCTGTCCTCAAGGTTGCGAATCCCCCTGTGCGAGCTAATGTATTACATCTCAG 413
Query 469 CACAGAATACTCTGTCCCAGTCTTGGAAGTCGTAAAAAATGTGTTCAGTCCTTACTTCGA 528
||||||||||||||||||||||| | ||| ||| |||||||||||||||||||||| ||
Sbjct 414 CACAGAATACTCTGTCCCAGTCTCGAAAGCCGTCGAAAATGTGTTCAGTCCTTACTTTGA 473
Query 529 AAATACAATTTGGTTTCAGGACTCTAAGATGTACCACTTCAGCATGTTTCATGCATCGAA 588
|||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 474 GAATACAATCTGGTTTCAGGACTCTAAGATGTATCACTTTAGCATGTTTCATGCATCGAA 533
Query 589 TCACATTTTCTCTGTTCCAGCTACTGAAGTTGAGGTTGAAGCAGAAGCAGCTGCTGTTAA 648
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 534 TCACATTTTCTCTGTTCCAGCTACTGAAGATGAGGTTGAAGGAGAAGCAGCTGCTGTTAA 593
Query 649 AGCAGTTGCTAA-AGAGCTTTGCCCTTTGGAGATTATCTTGGATAGAGTTCTATTAACCT 707
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AGCAGTTGCTAATA-AGCTTTGCCCTTTGGAGATTATCTTGGATAGAGTTCTATTAACCT 652
Query 708 CGACTGGTGTTCTTCTTGGATGCTGGAAGGTTAATTCTGGAGATGACCCCATAACAATCC 767
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CGACCGGTGTTCTTCTTGGATGCTGGAAGGTTAATTCTGGAGATGACCCCATAACAATCC 712
Query 768 GCTTGAAACTGAGATCTGTTCTTCCACGTGCACCGGAGAAGCAACTTTATGATGCTGCAA 827
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GCTCGAAACTGAGATATGTTCTTCCACGTGCACCGGAGAAGCAACTTTATGATGCTGCAA 772
Query 828 TTCTTCATACATCATTGGCAAGACTGCTTGGTCCACCAATATCTCCAACTGAGGCTGGTT 887
|||||||||||||||||||||| ||||||||||| | | | | || || | |
Sbjct 773 TTCTTCATACATCATTGGCAAGGCTGCTTGGTCC-----T--C-C-AGCT-AG--T--T- 817
Query 888 CTGACGACCATCTCCAGCTTCTCCATGAGTTGGTCACAAGACTAAACAACCAAATCCGAG 947
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 818 CTGACGACCATCTCCAGCTTATCCATGAATTGGTCACAAGACTAAACAACCAAATCCGAG 877
Query 948 GATTCAAGGCAATAGTATCAGAACTGTGGTATGTAGAAGAGTTCGATCTGCTGGCGCTCG 1007
|||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 878 GATTCAGGGCAATAGTATCAGAGCTGTGGTATGTAGAAGAGTTTGATCTGCTGGCGCTTG 937
Query 1008 CCTTGGGAGGAAGAATGAATGTTCGATCATTCCCACTCGGCTGTGCAAAGAGCTAATACT 1067
| ||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||
Sbjct 938 CATTGGGAGGAAGAATGAAGGTTCGATCATTCCCACTCGGCGGTGCAAAGAGTTAATACT 997
Query 1068 TATTTCATCTTTAAGATCATCAAAACCCTAATGTCATCTTCATGTATATTTTCTTCAACT 1127
||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||
Sbjct 998 TATTTCATCTTTAAGATCATCAAAACCATTATGTCATCTTCATGTACATTTTCTTCAACT 1057
Query 1128 TC--A---T---AGTCAAGAAAAATATCTTATTCAAGTCAAGACAAAAGT 1169
|| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 1058 TCTTAGACTCTTAGTCAAGAAAAATATCTTATTCAAGTCAAGACAAAAGT 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5