BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74540.1
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476592 jgi|Araly1|476592|fgenesh2_kg.2__1722__AT1G74540.1 2586 0.0
Ahg926836 jgi|Araly1|926836|scaffold_202397.1 1003 0.0
> Ahg476592 jgi|Araly1|476592|fgenesh2_kg.2__1722__AT1G74540.1
Length=1700
Score = 2586 bits (1400), Expect = 0.0
Identities = 1602/1701 (94%), Gaps = 8/1701 (0%)
Strand=Plus/Plus
Query 16 TACATCAATAACTGT-TGTTTCACATCGTCGAAGCAAAAATGATTATATATCTAATTTCA 74
|||||| | |||| | |||||||||| ||||||||||||||| || | ||||||||||||
Sbjct 5 TACATC-A-AACT-TATGTTTCACATTGTCGAAGCAAAAATGGTTCTTTATCTAATTTCA 61
Query 75 TTACTCCCTATCATCGTCGCCACCCTCATGCTTTATCAACGATGGTGGAGATCCAACATA 134
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 62 TTACTCCCTATCATCGTCGCCACCGTCATGCTTTATCAACGGTGGTGGAGATCCAACATA 121
Query 135 CCGCCGGGACCAAAACCAAAGTTTCTGCTTGGAAACCTTCATCAAATGAAACCACTTTGG 194
|||||||||||||| |||||||||||| |||| ||||| || ||||||||||||||||||
Sbjct 122 CCGCCGGGACCAAAGCCAAAGTTTCTGATTGGGAACCTCCACCAAATGAAACCACTTTGG 181
Query 195 ACGCATTCTTTCTCGGAGTGGTCAGAGACTTATGGTCCTATCATATCGGTGTGGATAGGG 254
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 182 ACGCATTCTTTCTCGGAGTGGTCACAGACTTATGGTCCTATCATATCTGTGTGGATAGGG 241
Query 255 TCACAGCTCACTGTCGTGGTCTCGAGCTCTGATCTAGCCAGACAAGTGTTGAGAGACAAA 314
||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 242 TCACAGCTCACCGTTGTGGTCTCCAGCTCTGATTTAGCCAGACAAGTGTTGAGAGACAAA 301
Query 315 GACCATCAGTTGTCTAACCGACACAGGATCGCAAGGATGACTCAGACCGGTACTGATCTT 374
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 302 GACCATCAATTGTCTAACCGACACAGGATCGCGAGGATGACTCAGACCGGTACTGATCTT 361
Query 375 GTTTGGTCCGATTACAGTCCACATTATGTGAAACTGAGGAAACTCTGTACACTCGAGCTC 434
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 362 GTTTGGTCTGATTACAGTCCACATTATGTCAAACTGAGGAAACTCTGTACACTCGAACTC 421
Query 435 TTCTCTCTGAAAAGCATCGAAAATTTCAGGTCCTTGAGAGAGATGGAAGCAAGATCGATG 494
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 422 TTCTCTCTGAAAAGCATCGAGAATTTCAGGTCGTTGAGAGAGATGGAAGCAAGATCGATG 481
Query 495 GTTGTGTCGATTCTGAAGGACTTAATGAGCAATTCAGGGGATGATCAGGAGCGAAAACCG 554
|||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 482 GTTGTGTCGATTCTCAAGGACTTGATGAGCGATTCAGGCGATGATCAGGAGCGAAAACCG 541
Query 555 GTGATTGTGAGGAAGTACCTAGCTGCGGTTGTTTTGAATACCATCTCAAGGTTAATGATA 614
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 542 GTGATTGTGAGGAAGTACCTAGCTGCGGTTGTTTTGAACACCATCTCAAGATTAATGATC 601
Query 615 GGGAAAGAGTTCGGGTCTGAGGAAGGAAAAGAGTTTAAAGCCATCGTTGAGAAAGAACAT 674
||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 602 GGGAAAGAGTTCGGGTCTGAGGAAGGAAAGGAGTTTAAATCAATCGTTGAGAAAGAACAT 661
Query 675 CTTCTCAGTGGCTCAGGGACGATTCTTGATCACGTCTGGTGGCTCAAATGGGTTTCTTCT 734
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 662 CTTCTCAGTGGCTCAGGGACGATTCTCGATCACGTCTGGTGGCTCAAATGGGTTTCGTCT 721
Query 735 TGGTTCTTTAGTGATAAGGAATTCTTAGCGCACAAGGATCGGAGAACAAAGTGGTTTAGA 794
||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 722 TGGTTGATTAGCGATAAGGAATTCTTAGCCCACAAGGATCGCAGAACAAAGTGGTTTAGA 781
Query 795 GGAGCTATTATGGTGGAAGAAGATATAGAAATAGAGGATCACAGGGGATTTGTTCGGAAA 854
|||||| | ||||||||||||||| ||| |||||||||||||||||| ||||||||||||
Sbjct 782 GGAGCTGTAATGGTGGAAGAAGATGTAGCAATAGAGGATCACAGGGGCTTTGTTCGGAAA 841
Query 855 TTGTTGGTGTTAAAAGAGCAGAAAGAGCTGAGCGAAGAGACGGTTGGGGGACTAGTCTGG 914
||||| || || ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 842 TTGTTAGTCTTGAAAGAGCAGAAAGAGCTAAGCGAAGAGACGGTTGGCGGACTAGTCTGG 901
Query 915 AACATGTTAACCGCGGGTGCTGACACAACTGCAGTTGTTATCGAATGGGCTATGGCAGAG 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 AACATGTTAACCGCGGGTGCTGACACAACTGCAGTTGTTATCGAATGGGCTATGGCAGAG 961
Query 975 ATGATCAAATGCCCGACCGTGCAAGAAAAGGCGCAACAGGAGCTTGATTCTGTGGTTGGA 1034
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 962 ATGATCAAATGCCCGGCCGTGCAAGAAAAGGCGCAACAGGAGCTTGATTCCGTGGTTGGA 1021
Query 1035 TCCGAAAGGTTAATGACTGAATCAGATATCCCCATA-CTGCCATATCTGCAATGTGTGGT 1093
||||||||||||||| |||||||||||||||| | | ||||||||||||||||| |||||
Sbjct 1022 TCCGAAAGGTTAATGTCTGAATCAGATATCCCGA-ACCTGCCATATCTGCAATGCGTGGT 1080
Query 1094 TAAAGAAGCTCTCCGGCTTCACCCGTCAACACCATTAATGCTTCCACACAAAGCAAGTGA 1153
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1081 TAAAGAAGCTCTCCGTCTTCACCCGTCAACACCATTAATGCTTCCACACAAAGCAAGCGA 1140
Query 1154 AACTGTTTGGGTAGGTGGGTACAAGGTTCCTAAGGGAGCCACAGTTTATGTCAATGTGCA 1213
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1141 AACAGTTTGGGTAGGTGGGTACAAGGTTCCTAAGGGCGCCACGGTTTATGTCAATGTGCA 1200
Query 1214 GGCGATTGGGCGGGACCCTGCAAACTGGATAAACCCATATGAGTTCAGACCAGAGCGGTT 1273
|||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1201 GGCGATTGGGCGAGACCCTGCAAACTGGATAAACCCGTATGAGTTTAGACCAGAGCGGTT 1260
Query 1274 CCTTCAGGAAGAAACCGATGTTAAAGGTCGAGACTTTAGGGTTCTTCCATTTGGATCAGG 1333
||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1261 CCTTCAGGAGGAAACTGATGTTAAAGGTCGAGACTTTAGGGTTCTTCCGTTCGGATCAGG 1320
Query 1334 AAGACGGATGTGTCCAGCGGCACAGCTCAGCATGAACTTGATGACATTGGTGATGGGAAA 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AAGACGGATGTGTCCAGCGGCACAGCTCAGCATGAACTTGATGACATTGGTGATGGGAAA 1380
Query 1394 TTTGTTGCATTGCTTCTCATGGAGTTCCCCTGTTCCTGGAGAGAGGATTGACATGAGCGA 1453
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1381 TTTGTTGCATTGCTTCTCATGGAGTTCCCCTATTCCTGGAGAGAGGATTGACATGAGCGA 1440
Query 1454 GAATCCTGGATTGCTTTGTAACATGAGGACTCCATTGCAGGCTCTAGCTTTGCCGAGAGC 1513
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1441 GAATCCTGGATTGCTTTGTAACATGAGGACTCCACTGCAGGCTCTAGCTTTGCCGAGAGC 1500
Query 1514 TGCCGCAAGAGCAATACCTTTACCTTTAGATTAAAATAGATAAACAATCAGACACATAAG 1573
||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1501 TGCAGCAAGAGTTATACCTTTACCTTTAGATTAAAATAGATAAATAATCAGACACATAAG 1560
Query 1574 ATAAGATAATCAAAATCCATATACCATGAAGACTCTCATAATGGACACGAAGATGTAGCT 1633
|||| ||||| ||| |||||| ||||||| |||| |||| ||||| ||||||||| |||
Sbjct 1561 ATAAAATAATGAAACTCCATAGACCATGATGACTTTCATTATGGAAACGAAGATGCAGCC 1620
Query 1634 ATGTAAAACCCAAGAGGCATTG-CAAGATTTGAGACATGGTTGAGTATAGTTTCATACAA 1692
|||| ||||||||||||||| | ||| ||||| ||||||||||| || |||||||||||
Sbjct 1621 ATGTCAAACCCAAGAGGCAT-GACAAAATTTGCGACATGGTTGAATACGGTTTCATACAA 1679
Query 1693 TAACATGTAGCTATTATATAT 1713
||||||||||||||||||||
Sbjct 1680 AAACATGTAGCTATTATATAT 1700
> Ahg926836 jgi|Araly1|926836|scaffold_202397.1
Length=1517
Score = 1003 bits (543), Expect = 0.0
Identities = 1223/1543 (79%), Gaps = 79/1543 (5%)
Strand=Plus/Plus
Query 42 GTCGAAGCAAAAAT-GA-TTATATATCTAATTTCATT-ACTCCCTATCATCGTCGCCACC 98
||| |||| ||||| || |||| || || || || || || | ||||||| ||||| ||
Sbjct 11 GTCTAAGC-AAAATGGATTTAT-TA-CTGATATCCTTAAC-CACTATCATAATCGCCGCC 66
Query 99 CTCATGCTTTATCAACGATGGT-GGAGATCCAACATACCGCCGGGACCA-AAAC-CAAAG 155
|||||| ||| |||| || ||||||| |||||||| || |||||| ||| | |
Sbjct 67 TTCATGCAAAATCTACGA-CGTCGGAGATCTAACATACCTCCAGGACCACCAACGC-GA- 123
Query 156 TTTCTGCTTGGAAACCTTCATCAAATGAAACCACTTTGGACGCATTCTTTCTCGGAGTGG 215
|||||| | ||||||||||||||| |||||||||| |||||||| |||||||| ||||||
Sbjct 124 TTTCTGATCGGAAACCTTCATCAACTGAAACCACTATGGACGCAGTCTTTCTCCGAGTGG 183
Query 216 TCAGAGACTTATGGTCCTATCATATCGGTGTGGATAGGGTCACAGCTCA-CTGTCGTGGT 274
||| | |||||||| || ||||||||||||||| |||| |||||||| | |||| |||||
Sbjct 184 TCACACACTTATGGCCCCATCATATCGGTGTGGTTAGGATCACAGCT-AGCTGTTGTGGT 242
Query 275 CTCGAGCTCTGATC-TAGCCAGACAAGTGTTGAGAGACAAAGACCATC-AGTTGTCTAAC 332
||| |||||||| | | |||| |||||||||||||||||||||| | | | || | ||||
Sbjct 243 CTCCAGCTCTGA-CTTGGCCAAACAAGTGTTGAGAGACAAAGACTACCAACTT-TGTAAC 300
Query 333 CGACACAGGATCGCAAGGATGACTCAGACCGGTACTGATCTTGTTTGGTCCGATTACAGT 392
||||| || | ||||||||||||||||| ||| | ||||||| |||||||||| ||| |
Sbjct 301 CGACATAGAACCGCAAGGATGACTCAGAACGGCAGTGATCTTATTTGGTCCGACTACGGA 360
Query 393 CCACATTATGTGAAACTGAGGAAACTCTGTACACTCGAGCTCTTCTCTCTGAAAAGCATC 452
|||||||||| ||| |||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 361 GCACATTATGTTAAAATGAGGAAACTCTGTACACTCGAGCTCTTTTCTTTGAAAAGCATA 420
Query 453 GAAAATTTCAGGTCCTTGAGAGAGATGGAAGCAAGATCGATGGTTGTGTCGATTCTGAAG 512
|| |||||||| ||||||| ||||||| ||| || |||||| ||||||| | ||
Sbjct 421 GAGTGTTTCAGGTTGATGAGAGAAATGGAAGTAAGTTCCATGGTTAAGTCGATTTTCAAT 480
Query 513 GACTTAATGAGCAATTCAGGGGATGATCAGGAGCGAAAACCGGTGATTGT-GAGGAAGTA 571
||||| |||| | | | ||||||| | ||| |||||| | || |||||| ||
Sbjct 481 GACTTGATGA-C----C-G---ATGATCA----C-AAA-CCGGTGGT-GTTGAGGAACTA 524
Query 572 CCTAGCTGCGGTTGTTTTGAATACCATCTCAAGGTTAATGATAGGGAAAG-AGTTCGGGT 630
|||| | | |||| |||||| | | ||||| ||| | || |||||| | ||||
Sbjct 525 TCTAGGTTCAGTTGCTTTGAACATTGTTTCAAGATTAGTTATCGGGAAAACA-TTCGAAC 583
Query 631 CTGAG-GAAGGAAAAGAGTTTAAAGCCATCGTTGAGAAAGA-ACATCTTCTCAGT-GGCT 687
| || ||||||| |||||||||| | |||||||| | || || || || | |||
Sbjct 584 C-GAAAGAAGGAAGAGAGTTTAAATCGATCGTTGATAGGGAGAC-TCG-CTTACCCGGCG 640
Query 688 CAGGGACGATTCTTGATCACGTCTGGT-GGCTCAAATGGGTTTCTTCTTGGTTCTTTAGT 746
|| | ||| |||||| | | | |||| ||| ||||||| ||||||||| ||
Sbjct 641 CAACCAAGATGCTTGATTATA-CAATTTGGCTTAAACGGGTTTCGTCTTGGTTCACCAGC 699
Query 747 GATAAGGAATTCTT-AGCGCACAAGGATCGGAGAACAAAGTGGTTTAGAGGAGCTATTAT 805
|| || | ||| | | ||||| || ||||| || ||| ||||||| | ||||| | ||
Sbjct 700 GACAATGCGTTCATGAA-GCACATGGCTCGGAAAAGAAAATGGTTTAAACGAGCTGTAAT 758
Query 806 GG-TGGAAGAAGATATAGAAATAGAGGATCACAGGGGATTTGTTCGGAAAT-TGTTGGTG 863
|| || ||| | || || || ||| |||| | | | ||||||| || | |||| | |
Sbjct 759 GGATG-AAGTATATGGAGGAA--GAG-ATCAAAAGTGTTTTGTTCAGAG-TCTGTTAGAG 813
Query 864 TTAAAAGAGCAGAAAGAGCTGAGCGAAGAGACGGTTGG-GGGACTAGTCTGGAACATGTT 922
|| |||||| |||| ||||||| ||| ||||| || | |||||| ||||||||||||||
Sbjct 814 TTGAAAGAGAAGAATGAGCTGACCGAGGAGACTGT-GATGGGACTGGTCTGGAACATGTT 872
Query 923 AACCGCGGGTGCTGACACAACTGC-AGTTGTTATCGAATGGGCTATGGCAGAGATGATCA 981
|||||| || ||||||||||| || | || |||||||||||| |||||||||||| |||
Sbjct 873 AACCGCAGGAGCTGACACAACCGCCA-TTACTATCGAATGGGCAATGGCAGAGATGGTCA 931
Query 982 AATGCCCGACCGTGCAAGAAAAGGCGCAACAGGAGCTTGATTCTGTGGTTGGATCCGAAA 1041
||||||||| ||||||||||||| ||| || ||||||||||| |||||||||| || |
Sbjct 932 GATGCCCGACTGTGCAAGAAAAGGTGCAGCATGAGCTTGATTCGGTGGTTGGATTCGGAC 991
Query 1042 GGTTAATGACTGA-ATCAGATATCCCCATACTGCCATATCTGCAATGTGTGGTTAAAGAA 1100
|||||||| |||| | |||||||||| | |||||||||||||||||| | | ||||||
Sbjct 992 GGTTAATGTCTGATA-CAGATATCCCAAAACTGCCATATCTGCAATGCATACTCAAAGAA 1050
Query 1101 GCTCTCCGGCTTCACCCGTC-AACACCATTAATGCTTCCACACAAAGCAAGTGAAACTGT 1159
||||||||||||||||| || ||||||||| |||||||||||||| || || ||| | ||
Sbjct 1051 GCTCTCCGGCTTCACCC-TCCAACACCATTGATGCTTCCACACAAGGCCAGCGAATCGGT 1109
Query 1160 TTGGGTAGGTGGGTACA-AGGTTCCTAAGGGAGCCACAGTTTATGTCAATGTGCAGGCGA 1218
| | |||||||||||| || |||||||||||||||| ||||||||||||||||||||||
Sbjct 1110 TCAGATAGGTGGGTACAGAG-TTCCTAAGGGAGCCACGGTTTATGTCAATGTGCAGGCGA 1168
Query 1219 TTGGGCGGGACCCTGCAAACTGGATAAACCCATATGAGTTCAGACCAGAGCGGTTCCTTC 1278
||| || || ||||||||||||| |||||| ||||||| |||||||||||||| |||
Sbjct 1169 TTGCTCGAGATCCTGCAAACTGGAGCAACCCAGATGAGTTTAGACCAGAGCGGTTTCTTG 1228
Query 1279 AGGAAGAAACCGATGTTAAAGGTCGAGACTTTAGGGTTCTTCCATTTGGATCAGGAAGAC 1338
||| ||||| ||||||||||||| ||||||| |||||||||| ||||| || |||||||
Sbjct 1229 TGGAGGAAACGGATGTTAAAGGTCAAGACTTTCGGGTTCTTCCGTTTGGGTCGGGAAGAC 1288
Query 1339 GGATGTGTCCAGCGGCACAGCTCAGCATGAACT-TGATGACATTGGTGA-TGGGAAATTT 1396
|| |||||||||| ||||| |||||| | || | |||||||||| | | | || |||||
Sbjct 1289 GGGTGTGTCCAGCTGCACAACTCAGCCTCAA-TATGATGACATTAGC-ACTAGGTAATTT 1346
Query 1397 GTTGCATTGCTTCTCATGGAGTTCCCCTGTTCCT-GGAGAG-AGGATTGACATGAGCGAG 1454
||||||||| |||||||||| ||| || ||| || || | || ||||||| ||||
Sbjct 1347 GTTGCATTGTTTCTCATGGACATCCTCTACACCTCGG-GAACAC-ATCGACATGACCGAG 1404
Query 1455 AATCCTGGATT-GCTTTGTAACATGAGGACTCCATTGCAGGCTCTAGCTTTG-CCGAGAG 1512
|| |||||||| | ||||| |||||| ||||||||||||||||||||||| | || || |
Sbjct 1405 AAGCCTGGATTAG-TTTGTTACATGAAGACTCCATTGCAGGCTCTAGCTTCGTCC-AG-G 1461
Query 1513 CTGCCGCAAGAGCAATACCTTT-ACCTTTAGATTAAAATAGAT 1554
||||| |||||| |||||||| | |||| | | ||||||||
Sbjct 1462 CTGCCACAAGAGTTATACCTTTTAACTTTTCACTGAAATAGAT 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65324770175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5