BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74550.1
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926836 jgi|Araly1|926836|scaffold_202397.1 2383 0.0
Ahg476596 jgi|Araly1|476596|fgenesh2_kg.2__1726__AT1G74560.3 189 6e-47
> Ahg926836 jgi|Araly1|926836|scaffold_202397.1
Length=1517
Score = 2383 bits (1290), Expect = 0.0
Identities = 1435/1507 (95%), Gaps = 1/1507 (0%)
Strand=Plus/Plus
Query 26 ACTTTGTCTAAGCAAAATGGATTTATTACTCATATCCTTAACCACTATCATAATCGCCGC 85
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 6 ACTTTGTCTAAGCAAAATGGATTTATTACTGATATCCTTAACCACTATCATAATCGCCGC 65
Query 86 CTACATGCAAAATCTACGACGTCGGGGATCCAACATACCGCCGGGACCACCAACGCGATT 145
|| |||||||||||||||||||||| |||| |||||||| || |||||||||||||||||
Sbjct 66 CTTCATGCAAAATCTACGACGTCGGAGATCTAACATACCTCCAGGACCACCAACGCGATT 125
Query 146 TCTGGTCGGAAACCTTCATCAACTGAAACCATTATGGACGCAGTCTTTCTCCGAGTGGTC 205
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 126 TCTGATCGGAAACCTTCATCAACTGAAACCACTATGGACGCAGTCTTTCTCCGAGTGGTC 185
Query 206 ACAGACTTATGGCCCCATCATATCGGTGTGGTTAGGATCACAGCTAGCTGTTGTGGTCTC 265
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 ACACACTTATGGCCCCATCATATCGGTGTGGTTAGGATCACAGCTAGCTGTTGTGGTCTC 245
Query 266 GAGCTCTGACTTAGCCAAACAAGTGTTGAGAGACAAAGACTACCAACTCTGTAACCGACA 325
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 246 CAGCTCTGACTTGGCCAAACAAGTGTTGAGAGACAAAGACTACCAACTTTGTAACCGACA 305
Query 326 CAGAACCGCAAGGATGACTCAGAACGGCAGCGATCTTATTTGGTCTGACTACGGAGCACA 385
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 306 TAGAACCGCAAGGATGACTCAGAACGGCAGTGATCTTATTTGGTCCGACTACGGAGCACA 365
Query 386 TTATGTGAAAATGAGAAAACTCTGTACACTCGAGCTCTTTTCTTTGAAAAGCATAGAGTG 445
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TTATGTTAAAATGAGGAAACTCTGTACACTCGAGCTCTTTTCTTTGAAAAGCATAGAGTG 425
Query 446 TTTCAGGTCGATGAGAGAGATGGAAGTAAGTTCCATGGTTAAGTCGATTTTCAATGACTT 505
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TTTCAGGTTGATGAGAGAAATGGAAGTAAGTTCCATGGTTAAGTCGATTTTCAATGACTT 485
Query 506 CATGAGCGATGATCAGAAACCAGTGGTGTTGAGGAACTATCTAGATTCTGTTGCTTTGAA 565
|||| ||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 486 GATGACCGATGATCACAAACCGGTGGTGTTGAGGAACTATCTAGGTTCAGTTGCTTTGAA 545
Query 566 CATTGTTTCAAGATTAGTTATCGGGAAAACATTCGAACCCAAAGATGGAAGAGAGTTTAG 625
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 546 CATTGTTTCAAGATTAGTTATCGGGAAAACATTCGAACCGAAAGAAGGAAGAGAGTTTAA 605
Query 626 ATCAATTGTAGAAAGGGAGACTCGCTTGCCCGGCGCAACCAAGATGCTTGATTACACCGT 685
||| || || || |||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 606 ATCGATCGTTGATAGGGAGACTCGCTTACCCGGCGCAACCAAGATGCTTGATTATACAAT 665
Query 686 TTGGCTTAAACGTCTTTCGTCATGGTTCACTAGCGACAAGGCGTTCATGAAGCACATGGC 745
|||||||||||| ||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 666 TTGGCTTAAACGGGTTTCGTCTTGGTTCACCAGCGACAATGCGTTCATGAAGCACATGGC 725
Query 746 TCGGAAAAGAAATTGGTTTAAACGAGCTGTAATGGATGAAGTATATGGAGGAAGAGATCA 805
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TCGGAAAAGAAAATGGTTTAAACGAGCTGTAATGGATGAAGTATATGGAGGAAGAGATCA 785
Query 806 AAAGTGTTTTGTTCAGAGTCTGTTAGAGTTGAAAGAGAAGGATGAGCTGACCGAGGAGAC 865
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 786 AAAGTGTTTTGTTCAGAGTCTGTTAGAGTTGAAAGAGAAGAATGAGCTGACCGAGGAGAC 845
Query 866 TGTGATGGGACTGGTCTGGAACATGTTAACTGCAGGAGCTGACACAACCGCCATAACTAT 925
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 846 TGTGATGGGACTGGTCTGGAACATGTTAACCGCAGGAGCTGACACAACCGCCATTACTAT 905
Query 926 TGAATGGGCAATGGCAGAGATGATCAGATGCCCGACCGTGAAAGAAAAGGTGCAGGATGA 985
||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||
Sbjct 906 CGAATGGGCAATGGCAGAGATGGTCAGATGCCCGACTGTGCAAGAAAAGGTGCAGCATGA 965
Query 986 GCTTGATTCCGTGGTTGGATCCGGACGGTTAATGTCTGATGCAGATATCCCAAAACTGCC 1045
||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 966 GCTTGATTCGGTGGTTGGATTCGGACGGTTAATGTCTGATACAGATATCCCAAAACTGCC 1025
Query 1046 GTTTCTGCAATGCGTACTCAAAGAAGCTCTCCGGCTTCACCCTCCAACACCATTGATGCT 1105
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 ATATCTGCAATGCATACTCAAAGAAGCTCTCCGGCTTCACCCTCCAACACCATTGATGCT 1085
Query 1106 TCCACACAAGGCCAGCGAATCAGTTCAGGTAGGTGGGTACAAAGTTCCTAAGGGAGCCAC 1165
||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||
Sbjct 1086 TCCACACAAGGCCAGCGAATCGGTTCAGATAGGTGGGTACAGAGTTCCTAAGGGAGCCAC 1145
Query 1166 GGTTTATGTCAACGTGCAGGCGATTGCTCGAGATCCTGCAAACTGGAGTAACCCAGATGA 1225
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1146 GGTTTATGTCAATGTGCAGGCGATTGCTCGAGATCCTGCAAACTGGAGCAACCCAGATGA 1205
Query 1226 GTTTAGACCAGAGAGGTTTCTTGTGGAGGAAACGGACGTTAAAGGTCAAGACTTTCGGGT 1285
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1206 GTTTAGACCAGAGCGGTTTCTTGTGGAGGAAACGGATGTTAAAGGTCAAGACTTTCGGGT 1265
Query 1286 TCTTCCGTTTGGGTCGGGAAGACGGGTGTGTCCAGCCGCTCAACTCAGCCTCAATATGAT 1345
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1266 TCTTCCGTTTGGGTCGGGAAGACGGGTGTGTCCAGCTGCACAACTCAGCCTCAATATGAT 1325
Query 1346 GACATTAGCACTAGGTAGTTTGTTGCATTGTTTCTCATGGACATCCTCTACACCTCGAGA 1405
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1326 GACATTAGCACTAGGTAATTTGTTGCATTGTTTCTCATGGACATCCTCTACACCTCGGGA 1385
Query 1406 ACACATTGACATGACCGAGAAGCCTGGATTAGTTTGTTACATGAAGGCTCCATTGCAGGC 1465
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1386 ACACATCGACATGACCGAGAAGCCTGGATTAGTTTGTTACATGAAGACTCCATTGCAGGC 1445
Query 1466 TCTAGCTTCGTCCAGGCTGCCACAAGAGTTATACCTTT-AACTTTTAACTGAGATAGATT 1524
|||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||
Sbjct 1446 TCTAGCTTCGTCCAGGCTGCCACAAGAGTTATACCTTTTAACTTTTCACTGAAATAGATT 1505
Query 1525 ATATTAA 1531
|||||||
Sbjct 1506 ATATTAA 1512
> Ahg476596 jgi|Araly1|476596|fgenesh2_kg.2__1726__AT1G74560.3
Length=1125
Score = 189 bits (102), Expect = 6e-47
Identities = 116/123 (94%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 1545 AAGAGAGATTCTCAATTGCGAAAAACAGATGTAGTTATGGCAAGATTTAGGACATGGATG 1604
|||||||||| ||||||| ||||||||||||||| | ||||||||||||||||||| ||
Sbjct 1125 AAGAGAGATTATCAATTGAGAAAAACAGATGTAGCTGCGGCAAGATTTAGGACATGGCTG 1066
Query 1605 ATGACATGGTTCGTACAAACAGAATGTAGCTATTGATAGTAAATAAACTAAATATTCCAA 1664
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 ATGAAATGGTTCGTACAAACAGAATGTAGCTATTGATAGTAAATAAACTAAATATTCCAA 1006
Query 1665 AAG 1667
|||
Sbjct 1005 AAG 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62506092045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5