BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74560.3
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476596 jgi|Araly1|476596|fgenesh2_kg.2__1726__AT1G74560.3 1711 0.0
Ahg920821 jgi|Araly1|920821|scaffold_102102.1 566 2e-160
> Ahg476596 jgi|Araly1|476596|fgenesh2_kg.2__1726__AT1G74560.3
Length=1125
Score = 1711 bits (926), Expect = 0.0
Identities = 1065/1130 (94%), Gaps = 17/1130 (2%)
Strand=Plus/Plus
Query 1 ACACTTCACAAGCATAAACTCTCATCGGGAGCTAGGGTTTTAGC----T-GATTCTCTTG 55
||||||||| |||||||||||||||| ||| ||||||||||||| | ||||||||||
Sbjct 1 ACACTTCACCAGCATAAACTCTCATCAGGAACTAGGGTTTTAGCTGATTCGATTCTCTTG 60
Query 56 TGACGGAACCACAAGAAGAGAAGAGACC-AAAAGGAGGAGCCAAAATCCTCTCTTTCTTT 114
||||||||||||||| ||||||| ||| | | ||||||||||||||||||||||||||
Sbjct 61 CGACGGAACCACAAGAGGAGAAGAAACCTAGCA-GAGGAGCCAAAATCCTCTCTTTCTTT 119
Query 115 GGAATTAGGGTTTCCTCAAAGGAAGTGAACTGAAAATGGTCGCGGACAAGAGCAAGAAGT 174
||||||||||||||||| |||| |||||| |||||||||| ||||| |||||||||||||
Sbjct 120 GGAATTAGGGTTTCCTCTAAGGGAGTGAAGTGAAAATGGTTGCGGATAAGAGCAAGAAGT 179
Query 175 CGAAAATTGAAGAGAAAGGCGAAGAAGAAAACTTGGAGCAAATCGACGCAGAGCTTGTTC 234
|||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||
Sbjct 180 CGAAAATTGAAGAGAAAGTCGAAGAAGAAAACTTGGAGCAAATCGATGAAAAGCTTGTTC 239
Query 235 TCTCAATTGAGAAGCTTCAGGAGATTCAAGACGACCTCGAGAAGATTAACGAAAAGGCCA 294
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 240 TCTCAATTGAGAAGCTTCAGGAGATTCAAGATGACCTCGAGAAGATTAATGAAAAGGCCA 299
Query 295 GTGACGAGGTCTTGGAAGTAGAGCAGAAATATAACGTGATACGGAAACCTGTCTATGACA 354
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTGATGAGGTCTTGGAAGTGGAGCAGAAATATAACGTGATACGGAAACCTGTCTATGACA 359
Query 355 AGCGCAATGAAGTTATCCAATCGATTCCTGGCTTTTGGATGACTGCTTTTTTGAGTCATC 414
||||||| ||||||||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct 360 AGCGCAACGAAGTTATCCAGTCGATTCCAGACTTTTGGATGACTGCTTTTTTGAGTCATC 419
Query 415 CTGCCTTAGGCGACCTCTTGACTGAAGAAGACCAAAAGATTTTTAAGTACTTGAACTCTC 474
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTGCATTAGGTGATCTCTTGACTGAAGAAGACCAAAAGATTTTTAAGTACTTGAACTCTC 479
Query 475 TGGAAGTGGAGGATGCCAAAGATGTGAAATCTGGATACTCTATAACTTTTCACTTCACTT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 TGGAAGTGGAGGATGCCAAAGATGTGAAATCTGGATACTCTATAACTTTTCACTTCAATT 539
Query 535 CAAACCCGTTCTTTGAGGATGCCAAGCTTACCAAGACATTTACTTTCCTTGAAGAAGGAA 594
| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||
Sbjct 540 CCAACCCGTTCTTTGAGGATGCCAAGCTTACTAAGACGTTTACCTTCCTCGAAGAAGGAA 599
Query 595 CAACAAAAATCACTGCAACTCCTATCAAATGGAAGGAGGGCAAGGGCTTGCCAAATGGAG 654
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 CAACAAAAATCACTGCAACTCCTATCAAGTGGAAGGAGGGCAAGGGCTTGCCAAATGGAG 659
Query 655 TGAACCATGATGATAAGAAAGGAAATAAACGTGCATTGCCAGAGGAGAGTTTCTTTACTT 714
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 660 TGAACCATGATGATAAGAAAGGAAACAAACGTGCATTGCCAGAGGAGAGTTTCTTTACTT 719
Query 715 GGTTTACTGATGCTCAACATAAGGAAGATGCTGGGGATGAGATTCATGATGAGGTTGCTG 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGTTTACTGATGCTCAACATAAGGAAGATGCTGGGGATGAGATTCATGATGAGGTTGCTG 779
Query 775 ATATTATCAAGGAAGATCTCTGGATGCTGATGAAGAGGATTTTGATGGAGATGATGATGG 834
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 780 ATATTATCAAGGAAGATCTGTGGACGCTGATGAAGAGGATTTTGATGGAGATGATGATGG 839
Query 835 TGACGAAGAGGGAGAAGA--A-GACGATGACGA---TGAAGAGGAGGAAGATGGTGAGGA 888
|||||||||||||||||| | ||||| ||||| |||||||||||||| |||||||||
Sbjct 840 TGACGAAGAGGGAGAAGATGACGACGAGGACGACGATGAAGAGGAGGAAGTTGGTGAGGA 899
Query 889 ATGATGGGAGCCCAAAGATAACACATTGCTGGCTTGCTTCTATAACAGATGTGTAAAGTT 948
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 900 ATGATGGGAGCCCAA-GATAACACATTGCTGGCTTGCTTCTATA---GATGTGTAAAGTT 955
Query 949 TGTGTTATGAGGTTCTCAATTTTAGCAATGATGAGACTAAGCTTTCTCTTTTGGAATATT 1008
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 956 TGTGTTATGAGGTTCTCAATTTTAGCAATGATGAGACTAAGCTATCTCTTTTGGAATATT 1015
Query 1009 TAGTTTATTTACTATCAATAGCTACATTCTGTTTGTACGAACCATGTCATCATCCATGTC 1068
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1016 TAGTTTATTTACTATCAATAGCTACATTCTGTTTGTACGAACCATTTCATCAGCCATGTC 1075
Query 1069 CTAAATCTTGCCATAACTACATCTGTTTTTCGCAATTGAGAATCTCTCTT 1118
|||||||||||| | ||||||||||||||| ||||||| ||||||||||
Sbjct 1076 CTAAATCTTGCCGCAGCTACATCTGTTTTTCTCAATTGATAATCTCTCTT 1125
> Ahg920821 jgi|Araly1|920821|scaffold_102102.1
Length=800
Score = 566 bits (306), Expect = 2e-160
Identities = 549/663 (83%), Gaps = 29/663 (4%)
Strand=Plus/Plus
Query 136 GAAGTGAACTGAAAATGGTCGCGGACAAGAGCAAGAAGTCGAAAATTGAAGAGAAAGGCG 195
|||||||| |||||||||| || |||||||||||||| | | | | ||| ||
Sbjct 7 GAAGTGAATTGAAAATGGTGGCAGACAAGAGCAAGAA---G------GCA-A-AAA-CCG 54
Query 196 AAGAAGAAAACTTGGAGCAAATCGA-CGCAGAGCTTGTTCTCTCAATTGAGAAGCTTCAG 254
||||||||||| | ||||||||||| | ||||||||| ||||| ||||| || || ||
Sbjct 55 AAGAAGAAAACGTCGAGCAAATCGATAG-AGAGCTTGTCCTCTCTATTGAAAAACTACAA 113
Query 255 GAGATTCAAGACGACCTCGAGAAGATTAACGAAAAGGCCAGTGACGAGGTCTTGGAAGTA 314
||||| |||||||||||||||||||| ||||||||||| ||||| || || ||||||||
Sbjct 114 GAGATCCAAGACGACCTCGAGAAGATAAACGAAAAGGCTAGTGATGAAGTGTTGGAAGTG 173
Query 315 GAGCAGAAATATAACGTGATACGGAAACCTGTCTATGACAAGCGCAATGAAG-TTATCCA 373
|||||||||||||| |||||| |||||||||| ||||||||||| || | || ||||| |
Sbjct 174 GAGCAGAAATATAATGTGATAAGGAAACCTGTTTATGACAAGCGTAACG-AGATTATCAA 232
Query 374 ATCGATTCCTGGCTTT-TGGATGACTGCTTTTTTGAGTCATCCTGC-CTTAGGCGACCTC 431
||| || ||| | ||| ||| | |||||||| |||||||| ||||| ||| || || ||
Sbjct 233 ATCCATCCCT-GATTTCTGGTTAACTGCTTTCTTGAGTCACCCTGCTCTT-GGTGAACTT 290
Query 432 TTGACTGAAGAAGACCAAAAGATTTTTAAGTA-CTTGAACTCTCTGGAAGTGGAGGATGC 490
||||| |||||||||||||||||||| || || ||| | |||||| || || ||||||||
Sbjct 291 TTGACAGAAGAAGACCAAAAGATTTTCAAATACCTT-AGCTCTCTTGATGTTGAGGATGC 349
Query 491 CAAAGATGTGAAATCTGGATACTCTATAACTTTTCACTTCACTTCAAACCCGTTCTTTGA 550
||||||||||||||||||||||||||| |||||| |||||| | | || || || |||||
Sbjct 350 CAAAGATGTGAAATCTGGATACTCTATCACTTTTTACTTCAATCCCAATCCATTTTTTGA 409
Query 551 GGATGCCAAGCTTACCAAGACATTTAC-TTTCCTTGAAGAAGGAACAACAAAAATCACTG 609
|||| || || || ||||| ||||| |||| | |||||||| |||||||||||||| |
Sbjct 410 AGATGGAAAACTAACAAAGACTTTTACCTTTC-TCGAAGAAGGGACAACAAAAATCACAG 468
Query 610 CAACTCCTATCAAATGGAAGGAGGGCAAGGGCTTGCCAAATGGAGTGAACCATGATGATA 669
| || |||||||||||||| |||||||| |||||| ||||||||||||| || || || |
Sbjct 469 CCACGCCTATCAAATGGAAAGAGGGCAAAGGCTTGTCAAATGGAGTGAATCACGA-GA-A 526
Query 670 AGAAAGGAAATAAACGTGCATTGCCAGAGGAGAGTTTCTTTACTTGGTTTAC-TGATGCT 728
||| ||||| ||||||||||| || || ||||| |||||||| |||||| | |||||||
Sbjct 527 -GAATGGAAACAAACGTGCATTACCTGAAGAGAGCTTCTTTACCTGGTTT-CGTGATGCT 584
Query 729 CAACATAAGGAAGATGCTGGGGATGAGATTCATGATGAGGTTGCTGATATTATCAAGGAA 788
||||| ||||| |||| || ||||||||| || || |||||||| ||||| |||||||||
Sbjct 585 CAACACAAGGAGGATGTTGAGGATGAGATGCAAGACGAGGTTGCGGATATCATCAAGGAA 644
Query 789 GAT 791
|||
Sbjct 645 GAT 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41858962866
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5