BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G74590.1 Length=1019 Score E Sequences producing significant alignments: (Bits) Value Ahg476598 jgi|Araly1|476598|fgenesh2_kg.2__1728__AT1G74590.1 1386 0.0 Ahg320706 jgi|Araly1|320706|fgenesh1_pm.C_scaffold_4000763 89.8 4e-17 > Ahg476598 jgi|Araly1|476598|fgenesh2_kg.2__1728__AT1G74590.1 Length=986 Score = 1386 bits (750), Expect = 0.0 Identities = 912/988 (92%), Gaps = 19/988 (2%) Strand=Plus/Plus Query 1 ATAATCCCCAAAGAGATTTTAAGAAAAAGGTGTAAGAAAT-AAACAACCGAGTTTTGAGA 59 |||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||||| Sbjct 1 ATAATCCCCAAAAAGATTTTAAGAAAAAAGTGTAAGAAATAAAACAACAGAGTTTTGAGA 60 Query 60 TATGGAGGAGAAGAAGAGCAAAGTGATATTACATGGGACGTGGATAAGCACATACTCAAA 119 ||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 61 GATGGAGGAGGAGAACAGCAAAGTGATATTACATGGGACGTGGATAAGCCCATACTCAAA 120 Query 120 GAGGGTCGAAATCGCTCTTAAACTCAAGGGTGTACTCTACGAGTACCTCGAAGAAGATCT 179 ||||||||||||||| |||||||||||||| |||| || |||||| ||||||||||||| Sbjct 121 GAGGGTCGAAATCGCCCTTAAACTCAAGGGCATACTATATGAGTACGTCGAAGAAGATCT 180 Query 180 TCAGAACAAAAGTGAATCGCTGATTCAACTCAACCCGGTGCACAAGAAGATTCCTGTTCT 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCAGAACAAAAGTGAATCGCTGATTCAACTCAACCCGGTGCACAAGAAGATTCCTGTTCT 240 Query 240 TGTCCATGATGGGAAACCAGTGGCTGAATCACTTGTGATTCTTGAATATATCGATGAGAC 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TGTCCATGATGGGAAACCAGTGGCTGAATCACTTGTGATTCTTGAATATATCGATGAGAC 300 Query 300 GTGGACAAACTCTCCTCGTTTCTTCCCAGAGGATCCTTATGAAAGGGCCCAGGTCCGGTT 359 |||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 301 GTGGACGAACTCTCCTCGTTTCTTCCCAGAGGATCCTTATGAAAGGGCTCAGCTCCGGTT 360 Query 360 CTGGGTCAGCTACATCAACCAACAGGTGTTTGAGGTCATGGGTCAAGTCATGTCCCAGGA 419 |||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| || Sbjct 361 CTGGGTCAGCTACATCAACCAACAGGTGTTTGAGGTCACGGGTCAAATCATGTTCCAAGA 420 Query 420 GGGTGAAGCTCAAGCAAAGTCTGTAGAAGAGGCAAGAAAAAGATTCAAAGTTCTTGATGA 479 |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||||||| Sbjct 421 GGGTGAAGCTCAAGCAAAATCTGTAGAAGAGGCTCGAAAGAGAATCAAAGTTCTTGATGA 480 Query 480 GGGACTCAAGAAGCATTTCCCGAATAAAAACATCAGA-AGGAATGATGATGTTGGGCTTT 538 |||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||| Sbjct 481 GGGACTCAAGGAGCATTTCCCGAATAAAAACATCAGAGAG-AATGATGATGTAGGGCTTT 539 Query 539 TGGAAATCACCATCATTGCTACTCTCGGAGGCTACAAAGCTCATCGTGAAGCAATCGGTG 598 ||||||||| ||||||||||||| |||||| | |||||||||||||||||| |||||||| Sbjct 540 TGGAAATCATCATCATTGCTACTTTCGGAGTCCACAAAGCTCATCGTGAAGAAATCGGTG 599 Query 599 TAGACATAATTGGTCCAGTGAACACTCCGACTTTATACAACTGGATAGAGCGCCTGCAAG 658 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 600 TAGAGATAATTGGTCCAGTGAACACTCAGACTTTATACAACTGGATAGAGCGCCTGCAAG 659 Query 659 ATCTAAGTGTGATAAAAGAAGTCGAAGTGCCTCATGATACGTTGGTGACATTTA-TCCAG 717 |||| |||||||| ||||||||||||||||||||||||| |||||||| | ||| ||||| Sbjct 660 ATCTGAGTGTGATGAAAGAAGTCGAAGTGCCTCATGATAAGTTGGTGA-ACTTAATCCAG 718 Query 718 AAGTATAGACAAAAGTGTCTCCAGCAGGCTGCAAATGCATAATTAGATCAAGATGCTGGT 777 || ||||||||||||||||||||||||||||||||||| |||||||||||||||| | || Sbjct 719 AACTATAGACAAAAGTGTCTCCAGCAGGCTGCAAATGCGTAATTAGATCAAGATGTTTGT 778 Query 778 CTAGTGATGAATCATCTGGATTTAATATTGTCTCAGAGGATAATAG-AATA-AGA-G--T 832 ||||||||||||||||||||||||||||||||||||||||||| || ||| ||| | | Sbjct 779 CTAGTGATGAATCATCTGGATTTAATATTGTCTCAGAGGATAACAGCAATCTAGATGAAT 838 Query 833 --T--AGATAACTATTTAAAGTAAGAAATAATTCCCTGAGAGTTGTGTATGAACTTATCG 888 | |||| ||| || |||||||||||||||||||||||||||| |||||| |||||| Sbjct 839 CATCTAGATTACTGCTTGAAGTAAGAAATAATTCCCTGAGAGTTGTTTATGAAATTATCG 898 Query 889 TAGCTATTACTGTATGATAATGAACTAAAGAAAACCGTTTGCGGTATCTCCATGCTCTAT 948 || |||||||||||||||||||||||||||||| | |||| | |||||||||||||||| Sbjct 899 TATATATTACTGTATGATAATGAACTAAAGAAAAACATTTGTGATATCTCCATGCTCTAT 958 Query 949 A-----GTTGATACGCTTTGTTGTTATA 971 | |||||||||||||||||| ||| Sbjct 959 ACATTAGTTGATACGCTTTGTTGTCATA 986 > Ahg320706 jgi|Araly1|320706|fgenesh1_pm.C_scaffold_4000763 Length=696 Score = 89.8 bits (48), Expect = 4e-17 Identities = 86/104 (83%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 203 TTCAACTCAACCCGGTGCACAAGAAGATTCCTGTTCTTGTCCATGA-TGGGAAACCAG-T 260 ||||| | || ||||| | |||| |||||| |||||||| ||| | ||| ||||| | | Sbjct 149 TTCAATTGAATCCGGTTTATAAGATGATTCCGGTTCTTGTTCAT-ACTGGTAAACC-GAT 206 Query 261 GGCTGAATCACTTGTGATTCTTGAATATATCGATGAGACGTGGA 304 |||||||||||||||||||||||||||| |||||||| |||| Sbjct 207 TTCTGAATCACTTGTGATTCTTGAATATATTGATGAGACTTGGA 250 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37894179498 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5