BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74590.1
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476598 jgi|Araly1|476598|fgenesh2_kg.2__1728__AT1G74590.1 1386 0.0
Ahg320706 jgi|Araly1|320706|fgenesh1_pm.C_scaffold_4000763 89.8 4e-17
> Ahg476598 jgi|Araly1|476598|fgenesh2_kg.2__1728__AT1G74590.1
Length=986
Score = 1386 bits (750), Expect = 0.0
Identities = 912/988 (92%), Gaps = 19/988 (2%)
Strand=Plus/Plus
Query 1 ATAATCCCCAAAGAGATTTTAAGAAAAAGGTGTAAGAAAT-AAACAACCGAGTTTTGAGA 59
|||||||||||| ||||||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct 1 ATAATCCCCAAAAAGATTTTAAGAAAAAAGTGTAAGAAATAAAACAACAGAGTTTTGAGA 60
Query 60 TATGGAGGAGAAGAAGAGCAAAGTGATATTACATGGGACGTGGATAAGCACATACTCAAA 119
||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 GATGGAGGAGGAGAACAGCAAAGTGATATTACATGGGACGTGGATAAGCCCATACTCAAA 120
Query 120 GAGGGTCGAAATCGCTCTTAAACTCAAGGGTGTACTCTACGAGTACCTCGAAGAAGATCT 179
||||||||||||||| |||||||||||||| |||| || |||||| |||||||||||||
Sbjct 121 GAGGGTCGAAATCGCCCTTAAACTCAAGGGCATACTATATGAGTACGTCGAAGAAGATCT 180
Query 180 TCAGAACAAAAGTGAATCGCTGATTCAACTCAACCCGGTGCACAAGAAGATTCCTGTTCT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAGAACAAAAGTGAATCGCTGATTCAACTCAACCCGGTGCACAAGAAGATTCCTGTTCT 240
Query 240 TGTCCATGATGGGAAACCAGTGGCTGAATCACTTGTGATTCTTGAATATATCGATGAGAC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGTCCATGATGGGAAACCAGTGGCTGAATCACTTGTGATTCTTGAATATATCGATGAGAC 300
Query 300 GTGGACAAACTCTCCTCGTTTCTTCCCAGAGGATCCTTATGAAAGGGCCCAGGTCCGGTT 359
|||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 301 GTGGACGAACTCTCCTCGTTTCTTCCCAGAGGATCCTTATGAAAGGGCTCAGCTCCGGTT 360
Query 360 CTGGGTCAGCTACATCAACCAACAGGTGTTTGAGGTCATGGGTCAAGTCATGTCCCAGGA 419
|||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| ||
Sbjct 361 CTGGGTCAGCTACATCAACCAACAGGTGTTTGAGGTCACGGGTCAAATCATGTTCCAAGA 420
Query 420 GGGTGAAGCTCAAGCAAAGTCTGTAGAAGAGGCAAGAAAAAGATTCAAAGTTCTTGATGA 479
|||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||
Sbjct 421 GGGTGAAGCTCAAGCAAAATCTGTAGAAGAGGCTCGAAAGAGAATCAAAGTTCTTGATGA 480
Query 480 GGGACTCAAGAAGCATTTCCCGAATAAAAACATCAGA-AGGAATGATGATGTTGGGCTTT 538
|||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 481 GGGACTCAAGGAGCATTTCCCGAATAAAAACATCAGAGAG-AATGATGATGTAGGGCTTT 539
Query 539 TGGAAATCACCATCATTGCTACTCTCGGAGGCTACAAAGCTCATCGTGAAGCAATCGGTG 598
||||||||| ||||||||||||| |||||| | |||||||||||||||||| ||||||||
Sbjct 540 TGGAAATCATCATCATTGCTACTTTCGGAGTCCACAAAGCTCATCGTGAAGAAATCGGTG 599
Query 599 TAGACATAATTGGTCCAGTGAACACTCCGACTTTATACAACTGGATAGAGCGCCTGCAAG 658
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 TAGAGATAATTGGTCCAGTGAACACTCAGACTTTATACAACTGGATAGAGCGCCTGCAAG 659
Query 659 ATCTAAGTGTGATAAAAGAAGTCGAAGTGCCTCATGATACGTTGGTGACATTTA-TCCAG 717
|||| |||||||| ||||||||||||||||||||||||| |||||||| | ||| |||||
Sbjct 660 ATCTGAGTGTGATGAAAGAAGTCGAAGTGCCTCATGATAAGTTGGTGA-ACTTAATCCAG 718
Query 718 AAGTATAGACAAAAGTGTCTCCAGCAGGCTGCAAATGCATAATTAGATCAAGATGCTGGT 777
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||
Sbjct 719 AACTATAGACAAAAGTGTCTCCAGCAGGCTGCAAATGCGTAATTAGATCAAGATGTTTGT 778
Query 778 CTAGTGATGAATCATCTGGATTTAATATTGTCTCAGAGGATAATAG-AATA-AGA-G--T 832
||||||||||||||||||||||||||||||||||||||||||| || ||| ||| | |
Sbjct 779 CTAGTGATGAATCATCTGGATTTAATATTGTCTCAGAGGATAACAGCAATCTAGATGAAT 838
Query 833 --T--AGATAACTATTTAAAGTAAGAAATAATTCCCTGAGAGTTGTGTATGAACTTATCG 888
| |||| ||| || |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 839 CATCTAGATTACTGCTTGAAGTAAGAAATAATTCCCTGAGAGTTGTTTATGAAATTATCG 898
Query 889 TAGCTATTACTGTATGATAATGAACTAAAGAAAACCGTTTGCGGTATCTCCATGCTCTAT 948
|| |||||||||||||||||||||||||||||| | |||| | ||||||||||||||||
Sbjct 899 TATATATTACTGTATGATAATGAACTAAAGAAAAACATTTGTGATATCTCCATGCTCTAT 958
Query 949 A-----GTTGATACGCTTTGTTGTTATA 971
| |||||||||||||||||| |||
Sbjct 959 ACATTAGTTGATACGCTTTGTTGTCATA 986
> Ahg320706 jgi|Araly1|320706|fgenesh1_pm.C_scaffold_4000763
Length=696
Score = 89.8 bits (48), Expect = 4e-17
Identities = 86/104 (83%), Gaps = 4/104 (4%)
Strand=Plus/Plus
Query 203 TTCAACTCAACCCGGTGCACAAGAAGATTCCTGTTCTTGTCCATGA-TGGGAAACCAG-T 260
||||| | || ||||| | |||| |||||| |||||||| ||| | ||| ||||| | |
Sbjct 149 TTCAATTGAATCCGGTTTATAAGATGATTCCGGTTCTTGTTCAT-ACTGGTAAACC-GAT 206
Query 261 GGCTGAATCACTTGTGATTCTTGAATATATCGATGAGACGTGGA 304
|||||||||||||||||||||||||||| |||||||| ||||
Sbjct 207 TTCTGAATCACTTGTGATTCTTGAATATATTGATGAGACTTGGA 250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37894179498
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5