BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74630.1
Length=1932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339650 jgi|Araly1|339650|fgenesh1_pg.C_scaffold_2001749 2839 0.0
> Ahg339650 jgi|Araly1|339650|fgenesh1_pg.C_scaffold_2001749
Length=3666
Score = 2839 bits (1537), Expect = 0.0
Identities = 1782/1900 (94%), Gaps = 17/1900 (1%)
Strand=Plus/Plus
Query 37 AATAGCTGCAAGAACTTAAGAGCTTTAACACAAATACATGGCTTGTTTATTAAATACGGC 96
|||| ||||||||||||||||||| |||| ||||| |||||||| ||||| |||| ||||
Sbjct 539 AATA-CTGCAAGAACTTAAGAGCTCTAACCCAAATCCATGGCTTCTTTATCAAATCCGGC 597
Query 97 GTCGACACTGATTCTTACTTCACT-GGAAAACTTATCCTACATTGTGCGATTTCTATATC 155
|| ||||||||||||||||||| | ||||| ||||||||||||||||||||||| || ||
Sbjct 598 GTTGACACTGATTCTTACTTCA-TCGGAAAGCTTATCCTACATTGTGCGATTTCCATTTC 656
Query 156 CGACGCTTTACCTTACGCTCGTCGTCTCTTGCTCTGTTTTCCTGAACCTGATGCGTTTAT 215
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 657 CGACGCTTTACCTTACGCTCGCCGTCTCTTGCTCTGTTTTCCTGAACCTGATGCGTTTAT 716
Query 216 GTTCAACACTCTCGTCCGAGGCTACTCTGAATCCGATGAGCCGCACAATTCCGTTGCGGT 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 717 GTTCAACACTCTCGTCCGAGGCTACTCTGAATCCGATGAGCCGCACAATTCCGTTGCCGT 776
Query 276 GTTTGTTGAAATGATGAGGAAAGGTTTCGTCTTTCCGGATAGTTTCTCCTTCGCGTTTGT 335
|||||| ||||||||||||||||||||| | ||||| ||||| |||||||||||||||||
Sbjct 777 GTTTGTGGAAATGATGAGGAAAGGTTTCATTTTTCCTGATAGCTTCTCCTTCGCGTTTGT 836
Query 336 CATCAAGGCGGTGGAGAATTTCCGGTCTTTAAGAACTGGGTTTCAGATGCATTGTCAAGC 395
||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 837 TGTCAAGGCGGCGGCGAATTTCCGGTCTTTAAGAACTGGATTTCAGATGCATTGTCAAGC 896
Query 396 TTT-AAAGCATGGGCTTGAGTCGCATTTGTTTGTTGGC-ACTACCTTGATTGGTATGTAT 453
||| ||| ||||||||||| || |||||||||||| || ||||||||||| |||||||||
Sbjct 897 TTTGAAA-CATGGGCTTGATTCACATTTGTTTGTT-GCTACTACCTTGATCGGTATGTAT 954
Query 454 GGGGGATGTGGGTGTGTTGAGTTTGCTCGCAAGGTGTTCGATGAAATGCATCAACCGAAT 513
|||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 955 GGGGAATGTGGGTGTATTGAGTTTGCTCGCAAGGTGTTCGATGAAATGCCTCAACCGAAT 1014
Query 514 TTGGTTGCTTGGAATGCTGTGATCACCGCCTGTTTTAGGGGGAATGATGTTGCGGGAGCG 573
|||||||| |||||||||||| |||| |||||||| ||||||||||||||| |||| |||
Sbjct 1015 TTGGTTGCGTGGAATGCTGTGGTCACGGCCTGTTTCAGGGGGAATGATGTTTCGGGCGCG 1074
Query 574 AGGGAAATCTTCGATAAGATGCTGGTAAGGAATCACACGTCGTGGAACGTGATGCTTGCT 633
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 AGGGAAATCTTTGATAAGATGCTGGTAAGGAATCACACGTCGTGGAACGTGATGCTTGCT 1134
Query 634 GGGTACATTAAAGCTGGGGAGCTTGAGAGTGCTAAACGGATCTTCTCGGAAATGCCTCAC 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GGGTACATTAAAGCTGGGGAGCTTGAGAGTGCTAAACGGATCTTCTCGGAAATGCCTCAC 1194
Query 694 AGAGATGATGTCTCCTGGAGTACTATGATTGTTGG-TATTGCTCATAATGGAAGTTTCAA 752
|||||||||||||| ||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct 1195 AGAGATGATGTCTCTTGGAGCACTATGATTGTTGGGTAT-GCTCATAATGGAAGTTTCAA 1253
Query 753 TGAGTCTTTCTTGTACTTCAGGGAGTTAC-AACGAGCGGGAATGAGTCCAAATGAGGTAA 811
||||||||||| ||| || |||||||||| || |||||| |||||| ||||| ||||| |
Sbjct 1254 TGAGTCTTTCTCGTATTTTAGGGAGTTACTAA-GAGCGGAAATGAGACCAAACGAGGTGA 1312
Query 812 GTCTGACCGGAGTTCTCTCTGCCTGTTCACAATCTGGGTCATTTGAGTTTGGGAAGATAT 871
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1313 GTCTCACCGGAGTTCTCTCTGCCTGTTCACAATCTGGGGCATTTGAGTTTGGGAAGACAT 1372
Query 872 TACACGGGTTTGTAGAGAAAGCAGGGTATAGTTGGATAGTTTCGGTGAACAATGCGCTTA 931
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TACACGGGTTTGTAGAGAAATCAGGGTATAGTTGGATAGTTTCGGTGAACAATGCGCTTA 1432
Query 932 TTGATATGTATTCTAGGTGTGGTAATGTCCCAATGGCTAGGTTAGTCTTTGAAGGTATGC 991
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1433 TTGATATGTATTCTAGATGTGGTAATGTCCCAATGGCTAGATTAGTCTTTGAAGGTATGC 1492
Query 992 AAGAGAAGAGGTGTATTGTATCTTGGACATCAATGATAGCAGGCTTAGCTATGCATGGTC 1051
||||||||| | |||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1493 AAGAGAAGATGAGTATTGTATCTTGGACATCAATGATAGCGGGCTTAGCAATGCATGGTC 1552
Query 1052 AAGGAGAAGAAGCTGTTAGACTATTCAATGAAATGACCGCGTATGGTGTTACACCAGACG 1111
| |||||||||||| ||||| |||||||||||||||| | || |||||||| |||||||
Sbjct 1553 ACGGAGAAGAAGCTATTAGAATATTCAATGAAATGACTGAGTCTGGTGTTATGCCAGACG 1612
Query 1112 GGATATCTTTCATTTCACTTTTGCATGCTTGCAGTCATGCTGGACTGATTGAAGAAGGTG 1171
||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1613 AGATATCTTTCATTTCGCTTTTGTATGCTTGCAGTCATGCTGGACTGATCAAAGAAGGTG 1672
Query 1172 AAGATTACTTTTCTGAGATGAAGAGAGTTTACCACATCGAACCAGAAATTGAACACTATG 1231
||| |||||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1673 AAGGTTACTTCTCTAAGATGAAGAGAGTCTACCACATCGAACCAGCAATTGAACACTATG 1732
Query 1232 GTTGCATGGTTGATTTATATGGCCGATCTGGAAAACTGCAAAAGGCTTAT-GATTTCATA 1290
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1733 GTTGCATGGTTGATTTATATGGCCGATCTGGAAAACTGCAAAAGGCTTATAG-TTTCATA 1791
Query 1291 TGCCAAATGCCAATTCCGCCAACTGCCATAGTATGGCGGACTCTTCTCGGGGCTTGCAGT 1350
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1792 TGCCAAATGCCAATTCCGCCAACTGCCATAGTGTGGCGGACTCTTCTCGGGGCTTGCAGT 1851
Query 1351 AGTCATGGGAATATCGAATTGGCAGAGCAAGTGAAACAAAGGCTTAATGAGCTTGACCCA 1410
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1852 AGTCATGGGAATATCGAACTGGCCGAGCAAGTGAAACAAAGGCTTAATGAGCTTGACCCA 1911
Query 1411 AATAACTCAGGGGATCTTGTACTTCTGTCGAATGCTTATGCAACTGCAGGTAAATGGAAG 1470
|||||||| ||||||||||| ||| ||||||||| |||||| ||||||||||||||||||
Sbjct 1912 AATAACTCGGGGGATCTTGTTCTTTTGTCGAATGTTTATGCTACTGCAGGTAAATGGAAG 1971
Query 1471 GATGTTGCTTCTATCAGAAAGTCAATGATTGTCCAGAGAATCAAGAAGACAACTGCTTGG 1530
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1972 GATGTTGCTTCTATCAGAAAGTCAATGATTGTTCAGAGAATCAAGAAGATAACTGCTTGG 2031
Query 1531 AGCTTGGTTGAAGTTGGCAAAACCATGTACAAGTTCACTGCAGGCGAGAAAAAGAAGGGA 1590
|||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| |
Sbjct 2032 AGCTTGGTGGAAGTTGGCAAAACCATGTATAAGTTCACTGCATGCGAGAAAAAGAAGGAA 2091
Query 1591 ATCGATATAGAGGCTCACGAGAAGCTAAAAGAAATAATCTTGAGGCTTAAAGATGAAGCT 1650
| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 2092 ACCGATATAGAGGCTCACGAGAAGCTAAAAGAAATCATCTTGAGGCTTAGAGATGAAGCT 2151
Query 1651 GGATATACCCCAGAAGTAGCAAGTGCTTTATATGATGTAGAAGAGGAAGAAAAGGAGGAT 1710
|| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2152 GGGTATGCCCCAGAAGTAGCAAGTGCTTTATATGATGTGGAAGAGGAAGAAAAGGAGGAT 2211
Query 1711 CAAGTGAGTAAACACAGTGAGAAGCTTGCACTTGCATTTGCTCTAGCTAGATTGTCC-AA 1769
|| || |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2212 CAGGTAAGTAAACACAGTGAGAAGCTTGCACTTGCATTTGCTCTAGCTAGATTG-CCTAA 2270
Query 1770 AGGAGCAAATATCAGGATAGTAAAGAATCTGAGAATTTGCAGAGATTGTCACGCTGTTAT 1829
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2271 AGGAGCAAATATCAGGATAGTAAAGAATCTGCGAATTTGCAGAGATTGTCACGCTGTTAT 2330
Query 1830 GAAGCTAACGTCGAAGGTTTATGGGGTAGAAATAT-TGGTCCGAGACAGAAATCGCTTTC 1888
|||||||||||||| ||| ||||| |||||||| | || ||||||||||||||||||| |
Sbjct 2331 GAAGCTAACGTCGAGGGTCTATGGAGTAGAAAT-TGTGATCCGAGACAGAAATCGCTTCC 2389
Query 1889 ATTCATTTAAGGACGGTTCTTGCTCATGCCGTGACTACTG 1928
||||||||||||||||||||||||||||| ||||||||||
Sbjct 2390 ATTCATTTAAGGACGGTTCTTGCTCATGCGGTGACTACTG 2429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72600006970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5