BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74650.1
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476602 jgi|Araly1|476602|fgenesh2_kg.2__1732__AT1G74650.1 1945 0.0
Ahg919629 jgi|Araly1|919629|scaffold_100910.1 226 4e-58
> Ahg476602 jgi|Araly1|476602|fgenesh2_kg.2__1732__AT1G74650.1
Length=1365
Score = 1945 bits (1053), Expect = 0.0
Identities = 1289/1397 (92%), Gaps = 40/1397 (3%)
Strand=Plus/Plus
Query 78 AAAGAAGGAAAGAAATTGAGGATGACTATTTCAAGTCCAAAGAGAGATTTTGAGTAGACC 137
|||||| |||||||||| |||| |||||||||||||||||| ||||||||||| |||||
Sbjct 1 AAAGAAAGAAAGAAATTAAGGAACACTATTTCAAGTCCAAAGTGAGATTTTGAGAAGACC 60
Query 138 CTCTTCACAAAAATCCAATCTTAGAGTCTTACTAGTTACTATCTAGCTTACATACACAGA 197
||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CTCTTTGCAAGAATCCAATCTTAGAGTCTTACTAGTTACTATCTAGCTTACACGCACAGA 120
Query 198 GACACTATACCAAAAATCCAATCTTATTAGAGTACTTACTATATAGCTTACACATACACA 257
||||| ||| ||||||||||||||| |||| ||||| ||| || || | |
Sbjct 121 GACAC--TACTAAAAATCCAATCTTA-AAGAG-CCTTAC----TAG-TT--AC-T----A 164
Query 258 CACACGAAGTACTATTTCAACGATCAAGAGCGTGTGCGTGAGGATATGGGTAGACCACCT 317
| | | ||| | | || | | | | ||||||||| |||||||| ||||||||||
Sbjct 165 TATA-G-CTTAC-A---C-AC-A-C-ACA--GTGTGCGTGTGGATATGGTTAGACCACCT 212
Query 318 TGTTGCGAGAAGATTGAGGTGAAGAAAGGACCATGGACTCCCGAAGAAGACATAATCTTG 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 TGTTGCGAGAAGATTGAGGTGAAGAAAGGACCATGGACTCCCGAAGAAGACATAATCTTG 272
Query 378 GTCTCTTATATCCAACAACACGGCCCTGGAAATTGGAGATCTGTCCCTGCAAACACCGGT 437
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 273 GTCTCTTATATCCAACAACACGGCCCTGGAAACTGGAGATCTGTTCCTGCAAACACCGGT 332
Query 438 TTGCTAAGGTGTAGCAAGAGTTGCAGACTTAGATGGACTAATTACCTTCGTCCCGGGATC 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 TTGCTAAGGTGTAGCAAGAGTTGCAGACTTAGATGGACTAATTACCTTCGTCCCGGGATC 392
Query 498 AAACGAGGAAATTTCACTCAACCGGAAGAGAAGATGATCATCCACCTTCAAGCTCTTTTG 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 AAACGAGGAAATTTCACTCAACCGGAAGAGAAGATGATCATCCACCTTCAAGCTCTTTTG 452
Query 558 GGAAATAGATGGGCAGCTATAGCATCATATCTACCTCAGAGGACCGACAATGATATCAAG 617
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 GGTAACAGATGGGCAGCTATAGCATCATATCTACCTCAGAGGACCGACAATGATATCAAG 512
Query 618 AACTACTGGAACACTCATCTTAAAAAGAAACTAGTGATGATGAAGTTTCAAAATGGTATC 677
||||| |||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||
Sbjct 513 AACTATTGGAACACTCATCTTAAAAAGAAACTCTTGACGATGAAGCTTCAAAACGGTATC 572
Query 678 ATCAACGAAAACAAAACCAATCTGGCAACAGATATTTCGTCTTGTAATAATAACAACAAT 737
||||||| | ||||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 573 ATCAACGGAGACAAAACCAATATGGCGACAGAGATTTCGTCTTGTAATAATAACAACAAT 632
Query 738 GGATGTAATCACAACAAAAGGACCACCAACAAAGGCCAATGGGAGAAAAAACTTCAAACA 797
|||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||
Sbjct 633 GGATGTAATCACAACAAAAGGATCGTCAACAAAGGCCAATGGGAGAAAAAGCTTCAAACA 692
Query 798 GACATCAACATGGCCAAACAAGCCTTATTCCAAGCCTTGTCACTTGACCAACCATCTTCA 857
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 693 GATATCAACATGGCCAAACAAGCGTTATTCCAAGCCTTGTCACTTGACCAACCATCTTCA 752
Query 858 TTGATCCCTCCCGATCCTGACTCACCAAAACCTCATCATCATTCTACCACCACTTATGCC 917
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 753 TTGATCCCTCCCGATCCTGACTCACCAAATCGTCATCATCATTCTACCACCACTTATGCC 812
Query 918 TCAAGCACAGATAACATCTCTAAATTACTCCAGAACTGGACAAGCTCATCATCGTCAAAG 977
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
Sbjct 813 TCAAGCACAGATAACATCTCTAAATTACTCCAGAACTGGACAAGCTCATCAACTTCAAGG 872
Query 978 CCTAACACTTCATCAGTCTCCAACAACCGG-AGCTCAAGCCCCGGTGAAGGAGGACTTTT 1036
||||||||||||||||||||||| |||| | |||||||||||||||||| ||||| ||||
Sbjct 873 CCTAACACTTCATCAGTCTCCAA-AACCCGTAGCTCAAGCCCCGGTGAAAGAGGAGTTTT 931
Query 1037 TGATCATCACTCTTTGTTCTCATCGAATTCAGAATCTGGATCAGTTGATGAGAAGCTGAA 1096
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 932 TGATCATCACTCTTTGTTCTCATCGAACTCAGAGTCTGGATCAGTTGATGAGAAGCTGAA 991
Query 1097 TTTGATGTCCGAGACAAGCATGTTCAAAGGTGA---GAGCAAGCCAGACATAGACATGGA 1153
||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 992 TTTGATGTCGGAGACAAGCATGTTCAAAGGTGATCAGAGCAAGCCAAACATAGACATGGA 1051
Query 1154 AGCTAC-AC--ctactactactactactGATGATCAAGGCTCGTTGTCATTGATCGAGAA 1210
|||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1052 AGCTACTACTACTACTACTACTACTACTGATGATCAAGGCTCGTTGTCTTTGATCGAGAA 1111
Query 1211 ATGGTTGTTTGATGATCAAGGCTTGGTTCAGTGTGATGATAGTCAAGAAGATCTCATCGA 1270
|||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1112 ATGGTTGTTTGACGATCAAGGCTTGGCTCAGTGTGATGATAATCAAGAAGATCTCATCGA 1171
Query 1271 CGTGTCTTTAGAGGAGTTAA-AATAATGATAACAACAGTCAAGATTTGTTCTATAAGAAA 1329
||| |||||||||| || || ||||||||| |||||||||||||||||||||| | ||||
Sbjct 1172 CGTATCTTTAGAGGGGT-AATAATAATGATTACAACAGTCAAGATTTGTTCTA-A-GAAA 1228
Query 1330 ATAAAACGTATAGAACAACGATAAAGCTAGCTAGGtttattaatttttctttcttttgtc 1389
|||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 1229 ATAAAACGTATAGAACAATGATATAGCTAGCTAGGTTTATTTCTTTTTCTTTCTTTTGTC 1288
Query 1390 ttttctctatgatctttagttacattttattttaCTGTGTGGCTTGCTTGTGGTCAAGTC 1449
|||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||
Sbjct 1289 TTTTCTCTATGATCTTTAGTTACATTTTATTTCACTGTGTGGCTTGCTTATTGTCAAGTC 1348
Query 1450 GATGAAGATCAAACTGT 1466
|||||||||||||||||
Sbjct 1349 GATGAAGATCAAACTGT 1365
> Ahg919629 jgi|Araly1|919629|scaffold_100910.1
Length=934
Score = 226 bits (122), Expect = 4e-58
Identities = 279/353 (79%), Gaps = 18/353 (5%)
Strand=Plus/Plus
Query 303 ATGGGTAGACCACCTTGTTGCGAGAAGATTGAGG-TGAAGAAAGGACCATGGACTCCCGA 361
|||||||| || || || || || ||||| | || | |||||||||||||||||||| ||
Sbjct 21 ATGGGTAGGCCTCCATGCTGTGACAAGATAG-GGATCAAGAAAGGACCATGGACTCCTGA 79
Query 362 AGAAGACAT-AATCTTGGTCTCTTATATCCAACAACACGGCCCTGGAAATTGGAGATCTG 420
|||||| || | |||| || ||||| |||||| |||| || |||||||| ||||||||||
Sbjct 80 AGAAGATATCATTCTT-GTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTG 138
Query 421 -TCCCTGCAAACACCGGTTTGCTAAGGTGTAGCAAGAGTTGCAGACTTAGATGGACTAAT 479
|||| | || || || | || || || ||||| ||||| ||||| |||||||| |||
Sbjct 139 TTCCC-ACCAATACTGGGCTACTGAGATGCAGCAAAAGTTGTAGACTCAGATGGACAAAT 197
Query 480 TACCTTCGTCCCGGGATCAAACGAGGAAA-TTTCACTCAACCGGAAG-AGAAGATGATCA 537
|| || | || || || ||||| ||||| ||| |||| | |||| || | |||||||
Sbjct 198 TATCTGAGACCTGGAATTAAACGTGGAAACTTT-ACTCCTCATGAAGAAGGA-ATGATCA 255
Query 538 TCCACCTT-CAAGCTCTT-TTGGGAAATAGATGGGCAG-CTATAGCATCATATCTACCTC 594
| || ||| ||||| ||| ||||| || | |||||| | | ||||| ||||||||||| |
Sbjct 256 TTCA-CTTGCAAGC-CTTATTGGGTAACAAATGGGC-GTCCATAGCTTCATATCTACCAC 312
Query 595 AGAGGACCGACAATGATATCAAGAACTACTGGAACACTCATCTTAAA-AAGAA 646
| || || ||||||||||||||||||||||||||||| ||| || || |||||
Sbjct 313 AAAGAACGGACAATGATATCAAGAACTACTGGAACACACAT-TTGAAGAAGAA 364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56792555295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5