BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G74660.1

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476603 jgi|Araly1|476603|fgenesh2_kg.2__1733__AT1G74660.1         876    0.0  


> Ahg476603 jgi|Araly1|476603|fgenesh2_kg.2__1733__AT1G74660.1
Length=552

 Score =  876 bits (474),  Expect = 0.0
 Identities = 532/558 (95%), Gaps = 12/558 (2%)
 Strand=Plus/Plus

Query  1    TCGTTTTCATAAAGAGTCTTTCGTAAGACCAAAGAGCCATTTTCGATTCCAGGGCTAAAA  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  1    TCGTTTTCATAAAGAGTCTTTCGTAAGACCAAAGAGCCATTTTCGATTCCAGGGCTAAGA  60

Query  61   CTAGGGTTTCACAGTTCATGATGAAGAAGAGACAGATGGTAATCAAGCAGAGATCAAGAA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTAGGGTTTCACAGTTCATGATGAAGAAGAGACAGATGGTAATCAAGCAGAGATCAAGAA  120

Query  121  ACTCCAACACATCTTCCTCTTGGACTACTACTTCGTCTTCTTCTTCTTCCTCC---GAGA  177
            |||||||||||||||||||| ||||||||||||||||||||||||| ||||||   ||||
Sbjct  121  ACTCCAACACATCTTCCTCTAGGACTACTACTTCGTCTTCTTCTTCCTCCTCCTCTGAGA  180

Query  178  TCAGTAACGTCCGTTACGTGGAGTGTCAGAAGAATCACGCTGCTAACATCGGAGGCTACG  237
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct  181  TCAGTAACGTCCGTTACGTGGAGTGCCAGAAGAATCACGCTGCTAACATCGGAGGTTACG  240

Query  238  CCGTCGACGGTTGCCGTGAGTTCATGGCCGCCGGAGTTGAAGGAACCGTTGATGCTTTGA  297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CCGTCGACGGTTGCCGTGAGTTCATGGCCGCCGGAGTTGAAGGAACCGTTGATGCTTTGA  300

Query  298  GATGCGCGGCTTGTGGTTGTCACCGGAATTTTCACCGGAAGGAAGTTGATACTGAGGTTG  357
            ||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct  301  GATGCGCCGCTTGTGGTTGTCACCGGAATTTTCACCGGAAGGAAGTTGATACGGAAGTTG  360

Query  358  TTTGTGAGTATTCTCCACCTAACGCTTgattttt-agaggattttacttttttc-ttctt  415
            |||||||||||||||||||||||||||||||||| | ||||||||||| ||||  || ||
Sbjct  361  TTTGTGAGTATTCTCCACCTAACGCTTGATTTTTCA-AGGATTTTACTCTTTTAATT-TT  418

Query  416  ttggtttggatttatcgattgatttttaAAGATGAATTTGTTAGAGGATATTTGTATATG  475
            ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  419  TTGGTTTGGGTTTATCGATTGATTTTTAAAGATGAATTTATTAGAGGATATTTGTATATG  478

Query  476  AATATTGATGTGTATATCAAAAACAG-CATACCGCCCATCTATATCTATAGGTATATATA  534
            ||||||||||||||||||||   ||| | |||||||||||||||||||||||||| ||||
Sbjct  479  AATATTGATGTGTATATCAA---CAGGC-TACCGCCCATCTATATCTATAGGTATTTATA  534

Query  535  AAATTGCTTGTTGGTTTG  552
            ||||||| ||||||||||
Sbjct  535  AAATTGCCTGTTGGTTTG  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20146150992


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5