BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G74670.1

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926846 jgi|Araly1|926846|scaffold_202407.1                        521    2e-147


> Ahg926846 jgi|Araly1|926846|scaffold_202407.1
Length=349

 Score =  521 bits (282),  Expect = 2e-147
 Identities = 328/350 (94%), Gaps = 4/350 (1%)
 Strand=Plus/Plus

Query  70   tctctctctctcAAGAGCTAGTCATGGCCAAACTCATAACTTCTT-TTCTCTT-ACTCAC  127
            |||||||| ||||| ||| ||||||||||||| ||||||||| || |||||||  | |||
Sbjct  1    TCTCTCTCCCTCAAAAGCCAGTCATGGCCAAATTCATAACTT-TTCTTCTCTTGGC-CAC  58

Query  128  AATTTTATTCACTTTCGTTTGTCTCACTATGTCAAAAGAAGCTGAGTACCATCCAGAAAG  187
            |||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct  59   AATTTTCTTCTCTTTCATTTGTCTCACTATGTCAAAAGAAGCTGAGTACCAGCCAGAAAG  118

Query  188  TTATGGACCAGGAAGTCTGAAATCATACCAATGTGGAGGACAATGCACAAGGAGATGTAG  247
            ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct  119  TTATGGACCCGGAAGTCTGAAATCATACCAATGTGGAGGACAATGCACGAGGAGGTGTGG  178

Query  248  CAACACAAAGTATCATAAGCCATGCATGTTCTTCTGCCAAAAGTGTTGTGCTAAATGCCT  307
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  TAACACAAAGTATCATAAGCCATGCATGTTCTTCTGCCAAAAGTGTTGTGCTAAATGCCT  238

Query  308  TTGTGTCCCTCCAGGCACGTACGGCAACAAACAAGTGTGTCCTTGTTACAACAACTGGAA  367
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  239  TTGTGTCCCTCCAGGCACGTACGGCAATAAACAAGTGTGTCCTTGTTACAACAACTGGAA  298

Query  368  GACTCAACAAGGTGGACCAAAATGTCCATAAACAAAAACATTGAGAGAGA  417
            ||||||||||||||||||||||||||||||| |||||||||| | |||||
Sbjct  299  GACTCAACAAGGTGGACCAAAATGTCCATAAGCAAAAACATTAAAAGAGA  348



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23979314793


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5