BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74680.1
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476604 jgi|Araly1|476604|fgenesh2_kg.2__1734__AT1G74680.1 2252 0.0
> Ahg476604 jgi|Araly1|476604|fgenesh2_kg.2__1734__AT1G74680.1
Length=1589
Score = 2252 bits (1219), Expect = 0.0
Identities = 1408/1498 (94%), Gaps = 17/1498 (1%)
Strand=Plus/Plus
Query 249 AATCGATGATGGTCGAAAGCTGAAACCTTTTTCTGCAAATCGATTAACCGACAAGAAAAT 308
|||||||||||||||||||||| ||||||||||||| |||||| | | | ||
Sbjct 105 AATCGATGATGGTCGAAAGCTGGAACCTTTTTCTGCGAATCGA-T---C--C-----AAC 153
Query 309 CCAACCCAACCC-ACCCACTTT-GTTTTGTTTGGATGATAAAAATGTCGGAAAAGAGTTT 366
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 154 CCAACCCAACCCTACCCACTTTGGTTTTGTTTGGATGATAAAAATGTCGGAAAAGAGTTT 213
Query 367 GCTTTCTTCAAAATTCCTCTTTTACACGATAACTGTTTCAACGCTACTCTTCATTGTCTC 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 GCTTTCTTCAAAATTCCTCTTTTACACGATAACTGTTTCAACGCTACTCTTCATTGTCTC 273
Query 427 TTCTCTCGTCTTCCTTCAACGCCACGATTCTTCTTTCACTTCAAGTTTAGTTCGCAAGCT 486
||||||| ||||||| |||||| |||| || |||||||||||||||||||||||||||||
Sbjct 274 TTCTCTCTTCTTCCTCCAACGCAACGAATCCTCTTTCACTTCAAGTTTAGTTCGCAAGCT 333
Query 487 GATTCTTCCAAGAACAGACATCAAGAACGAAGAATTCGGACTAATCGATACGAAATGCGA 546
|||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| |
Sbjct 334 GATTCTTCCAAGAACAGACATCAAGAACGACGAATTCGGAAAAATCGATACTTTATGCCA 393
Query 547 TCGAGACAGAGATGTGTTGAAGGTGTTTATGTACGATCTACCCTCTGAGTTTCACTTTGG 606
|||| || |||||||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct 394 TCGAAACCGAGATGTGTTGAAGGTGTTTATGTACAATCTGCCCTCTGAATTTCACTTTGG 453
Query 607 GATATTGAATTGGCACAAAAAAGGATCTGAGATTTGGCCAAATGTCAACAACATTAGTAC 666
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 454 GATATTGAATTGGCACAAAACAGGATCTGAGATTTGGCCAAATGTCAAGAACATTAGTAC 513
Query 667 AATCCCATCTTATCCTGGTGGGTTAAATCGTCAACACAGTGTAGAGTATTGGCTAACACT 726
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 514 AATCCCATCTTATCCTGGTGGGTTAAATCGGCAGCACAGTGTAGAGTATTGGCTTACACT 573
Query 727 TGAT-TTATTAGCTTCAGAGACACCTGAAATCAAGAGACCTTGTAGTAGTGCAGCTATTA 785
|||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 574 TGATCTT-TTAGCTTCAGAGACACCTGACATCAAGAGACCTTGTAGTAGTGCAGCAATTA 632
Query 786 GAGTGAAGAACTCTAATGAAGCTGATATAGTTTTCGTGCCTTTCTTTGCTTCGTTGAGTT 845
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 633 GAGTGAAGAACTCTAATGAAGCTGACATAGTTTTCGTGCCTTTCTTTGCTTCGTTGAGTT 692
Query 846 ACAATCGGAAATCGAAGCTCCGTGGAAACGAAACAAGCAGTGATGATAGATTGTTGCAAG 905
||||||| ||||| ||||||||||| |||||||| | ||||| ||||||||||||||| |
Sbjct 693 ACAATCGCAAATCTAAGCTCCGTGGGAACGAAACCATCAGTGGTGATAGATTGTTGCAGG 752
Query 906 AAAGATTAGTTGAGTTCTTGAAAAGTCAAGATGAGTGGAAAAGATTTGATGGGAAAGATC 965
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 753 AAAGATTAGTTGAGTTCTTGAAAAGTCAAGATGAGTGGAAAAGATTTCATGGGAAAGATC 812
Query 966 ATTTGATAGTAGCTCACCATCCAAACAGTTTGCTCTATGCAAGAAACTTTCTTGGATCAG 1025
|| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 813 ATCTGATAATAGCTCATCATCCAAACAGTTTGCTCTATGCAAGAAACTTTCTTGGATCCG 872
Query 1026 CAATGTTTGTTCTTTCGGATTTCGGAAGGTATTCGTCTGCTATCGCCAATCTTGAGAAAG 1085
||||||||||||| |||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct 873 CAATGTTTGTTCTCTCGGATTTCGGAAGGTATTCATCTGCGGTTGCCAATCTTGAGAAAG 932
Query 1086 ATATCATTGCGCCTTACGTGCACGTCGTTAAGACTATCTCTAACAACGAGTCAGCTTCGT 1145
||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||| |||
Sbjct 933 ATATCATTGCGCCTTACTTGCACCTCGTTAAGACTGTCTCTAACAATGAGTCAGCACCGT 992
Query 1146 TTGAGAAGCGTCCTGTATTGGCATATTTCCAAGGAGCTATCTATAGAAAAGATGGTGGAA 1205
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 993 TTGAGAAGCGTCCTGTATTGGCATATTTCCAAGGAGCAATCTATAGAAAAGATGGTGGAA 1052
Query 1206 CTATTCGTCAAGAACTGTATAACCTTCTGAAAGATGAGAAAGATGTTCACTTTGCATTTG 1265
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1053 CTATTCGTCAAGAACTGTATAACCTTCTTAAAGATGAGAAAGACGTTCACTTTGCATTTG 1112
Query 1266 GAACTGTTAGA-GGAAATGGGACTAAACAAACTGGTAAAGGAATGGCTTCCTCGAAGTTT 1324
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 GAACTGTTAGAAGGAA-TGGGACTAAACAAACTGGTAAAGGAATGGCTTCCTCGAAGTTT 1171
Query 1325 TGTCTCAATATCGCGGGTGACACTCCTTCCTCTAACCGTCTTTTCGATGCCATTGTGAGC 1384
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1172 TGTCTCAATATCGCGGGTGACACTCCTTCATCTAACCGTCTTTTCGATGCCATTGTAAGC 1231
Query 1385 CATTGTGTTCCGGTTATAATCAGTGATCAGATTGAGCTTCCATTTGAAGATACTCTTGAT 1444
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1232 CATTGTGTTCCGGTTATAATCAGTGATCAGATTGAGCTTCCGTTTGAAGATACTCTAGAT 1291
Query 1445 TATTCGGGTTTCTCCGTGTTTGTGCATGCTTCTGAAGCTGTAAAGAAAGAGTTCTTGGTG 1504
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1292 TATTCGGGTTTCTCCGTGTTTGTGCATGCTTCTGAAGCTGTAAAGAAAGGGTTTTTGGTG 1351
Query 1505 AATATTCTCAGAGGGATAACAGAGGATCAGTGGAAGAAGAAGTGGGGGAGATTGAAAGAG 1564
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 AATCTTCTCAGAGGGATAACAGAGGATCAGTGGAAGAAGAAGTGGGGGAGATTGAAAGAG 1411
Query 1565 GTTGCTGGGTGTTTTGAGTATCGCTTTCCTTCGCAAGTTGGAGATTCTGTGAATATGATT 1624
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1412 GTTGCTGGGTGTTTCGAGTATCGCTTTCCTTCGCACCCGGGAGATTCTGTGAATATGATT 1471
Query 1625 TGGTCAGCGGTTTCGCATAAGCTTTCTTCACTTCAGTTTGATGTTCATAGAAAGAATCGC 1684
|||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1472 TGGTCAGCGGTTTCACATAAGCTTTCTTCACTTCGGTTTGATGTCCATAGAAAGAATCGG 1531
Query 1685 TACCGTAGATCTGAAATGTTTGATAGAAACGGTTCGAGTTAAGATCATGTATGTGAAA 1742
|||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||
Sbjct 1532 TACCGTAGATCTGAAATGTTTGATAGAAACCGATCGAGTTAAGATCATATATGTGAAA 1589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69895599575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5