BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G74680.1 Length=1861 Score E Sequences producing significant alignments: (Bits) Value Ahg476604 jgi|Araly1|476604|fgenesh2_kg.2__1734__AT1G74680.1 2252 0.0 > Ahg476604 jgi|Araly1|476604|fgenesh2_kg.2__1734__AT1G74680.1 Length=1589 Score = 2252 bits (1219), Expect = 0.0 Identities = 1408/1498 (94%), Gaps = 17/1498 (1%) Strand=Plus/Plus Query 249 AATCGATGATGGTCGAAAGCTGAAACCTTTTTCTGCAAATCGATTAACCGACAAGAAAAT 308 |||||||||||||||||||||| ||||||||||||| |||||| | | | || Sbjct 105 AATCGATGATGGTCGAAAGCTGGAACCTTTTTCTGCGAATCGA-T---C--C-----AAC 153 Query 309 CCAACCCAACCC-ACCCACTTT-GTTTTGTTTGGATGATAAAAATGTCGGAAAAGAGTTT 366 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 154 CCAACCCAACCCTACCCACTTTGGTTTTGTTTGGATGATAAAAATGTCGGAAAAGAGTTT 213 Query 367 GCTTTCTTCAAAATTCCTCTTTTACACGATAACTGTTTCAACGCTACTCTTCATTGTCTC 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 214 GCTTTCTTCAAAATTCCTCTTTTACACGATAACTGTTTCAACGCTACTCTTCATTGTCTC 273 Query 427 TTCTCTCGTCTTCCTTCAACGCCACGATTCTTCTTTCACTTCAAGTTTAGTTCGCAAGCT 486 ||||||| ||||||| |||||| |||| || ||||||||||||||||||||||||||||| Sbjct 274 TTCTCTCTTCTTCCTCCAACGCAACGAATCCTCTTTCACTTCAAGTTTAGTTCGCAAGCT 333 Query 487 GATTCTTCCAAGAACAGACATCAAGAACGAAGAATTCGGACTAATCGATACGAAATGCGA 546 |||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| | Sbjct 334 GATTCTTCCAAGAACAGACATCAAGAACGACGAATTCGGAAAAATCGATACTTTATGCCA 393 Query 547 TCGAGACAGAGATGTGTTGAAGGTGTTTATGTACGATCTACCCTCTGAGTTTCACTTTGG 606 |||| || |||||||||||||||||||||||||| |||| |||||||| ||||||||||| Sbjct 394 TCGAAACCGAGATGTGTTGAAGGTGTTTATGTACAATCTGCCCTCTGAATTTCACTTTGG 453 Query 607 GATATTGAATTGGCACAAAAAAGGATCTGAGATTTGGCCAAATGTCAACAACATTAGTAC 666 |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 454 GATATTGAATTGGCACAAAACAGGATCTGAGATTTGGCCAAATGTCAAGAACATTAGTAC 513 Query 667 AATCCCATCTTATCCTGGTGGGTTAAATCGTCAACACAGTGTAGAGTATTGGCTAACACT 726 |||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| Sbjct 514 AATCCCATCTTATCCTGGTGGGTTAAATCGGCAGCACAGTGTAGAGTATTGGCTTACACT 573 Query 727 TGAT-TTATTAGCTTCAGAGACACCTGAAATCAAGAGACCTTGTAGTAGTGCAGCTATTA 785 |||| || |||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 574 TGATCTT-TTAGCTTCAGAGACACCTGACATCAAGAGACCTTGTAGTAGTGCAGCAATTA 632 Query 786 GAGTGAAGAACTCTAATGAAGCTGATATAGTTTTCGTGCCTTTCTTTGCTTCGTTGAGTT 845 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 633 GAGTGAAGAACTCTAATGAAGCTGACATAGTTTTCGTGCCTTTCTTTGCTTCGTTGAGTT 692 Query 846 ACAATCGGAAATCGAAGCTCCGTGGAAACGAAACAAGCAGTGATGATAGATTGTTGCAAG 905 ||||||| ||||| ||||||||||| |||||||| | ||||| ||||||||||||||| | Sbjct 693 ACAATCGCAAATCTAAGCTCCGTGGGAACGAAACCATCAGTGGTGATAGATTGTTGCAGG 752 Query 906 AAAGATTAGTTGAGTTCTTGAAAAGTCAAGATGAGTGGAAAAGATTTGATGGGAAAGATC 965 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 753 AAAGATTAGTTGAGTTCTTGAAAAGTCAAGATGAGTGGAAAAGATTTCATGGGAAAGATC 812 Query 966 ATTTGATAGTAGCTCACCATCCAAACAGTTTGCTCTATGCAAGAAACTTTCTTGGATCAG 1025 || ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 813 ATCTGATAATAGCTCATCATCCAAACAGTTTGCTCTATGCAAGAAACTTTCTTGGATCCG 872 Query 1026 CAATGTTTGTTCTTTCGGATTTCGGAAGGTATTCGTCTGCTATCGCCAATCTTGAGAAAG 1085 ||||||||||||| |||||||||||||||||||| ||||| | |||||||||||||||| Sbjct 873 CAATGTTTGTTCTCTCGGATTTCGGAAGGTATTCATCTGCGGTTGCCAATCTTGAGAAAG 932 Query 1086 ATATCATTGCGCCTTACGTGCACGTCGTTAAGACTATCTCTAACAACGAGTCAGCTTCGT 1145 ||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||| ||| Sbjct 933 ATATCATTGCGCCTTACTTGCACCTCGTTAAGACTGTCTCTAACAATGAGTCAGCACCGT 992 Query 1146 TTGAGAAGCGTCCTGTATTGGCATATTTCCAAGGAGCTATCTATAGAAAAGATGGTGGAA 1205 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 993 TTGAGAAGCGTCCTGTATTGGCATATTTCCAAGGAGCAATCTATAGAAAAGATGGTGGAA 1052 Query 1206 CTATTCGTCAAGAACTGTATAACCTTCTGAAAGATGAGAAAGATGTTCACTTTGCATTTG 1265 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 1053 CTATTCGTCAAGAACTGTATAACCTTCTTAAAGATGAGAAAGACGTTCACTTTGCATTTG 1112 Query 1266 GAACTGTTAGA-GGAAATGGGACTAAACAAACTGGTAAAGGAATGGCTTCCTCGAAGTTT 1324 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1113 GAACTGTTAGAAGGAA-TGGGACTAAACAAACTGGTAAAGGAATGGCTTCCTCGAAGTTT 1171 Query 1325 TGTCTCAATATCGCGGGTGACACTCCTTCCTCTAACCGTCTTTTCGATGCCATTGTGAGC 1384 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1172 TGTCTCAATATCGCGGGTGACACTCCTTCATCTAACCGTCTTTTCGATGCCATTGTAAGC 1231 Query 1385 CATTGTGTTCCGGTTATAATCAGTGATCAGATTGAGCTTCCATTTGAAGATACTCTTGAT 1444 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 1232 CATTGTGTTCCGGTTATAATCAGTGATCAGATTGAGCTTCCGTTTGAAGATACTCTAGAT 1291 Query 1445 TATTCGGGTTTCTCCGTGTTTGTGCATGCTTCTGAAGCTGTAAAGAAAGAGTTCTTGGTG 1504 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 1292 TATTCGGGTTTCTCCGTGTTTGTGCATGCTTCTGAAGCTGTAAAGAAAGGGTTTTTGGTG 1351 Query 1505 AATATTCTCAGAGGGATAACAGAGGATCAGTGGAAGAAGAAGTGGGGGAGATTGAAAGAG 1564 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1352 AATCTTCTCAGAGGGATAACAGAGGATCAGTGGAAGAAGAAGTGGGGGAGATTGAAAGAG 1411 Query 1565 GTTGCTGGGTGTTTTGAGTATCGCTTTCCTTCGCAAGTTGGAGATTCTGTGAATATGATT 1624 |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1412 GTTGCTGGGTGTTTCGAGTATCGCTTTCCTTCGCACCCGGGAGATTCTGTGAATATGATT 1471 Query 1625 TGGTCAGCGGTTTCGCATAAGCTTTCTTCACTTCAGTTTGATGTTCATAGAAAGAATCGC 1684 |||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 1472 TGGTCAGCGGTTTCACATAAGCTTTCTTCACTTCGGTTTGATGTCCATAGAAAGAATCGG 1531 Query 1685 TACCGTAGATCTGAAATGTTTGATAGAAACGGTTCGAGTTAAGATCATGTATGTGAAA 1742 |||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||| Sbjct 1532 TACCGTAGATCTGAAATGTTTGATAGAAACCGATCGAGTTAAGATCATATATGTGAAA 1589 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69895599575 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5