BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74690.1
Length=2275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926848 jgi|Araly1|926848|scaffold_202409.1 2789 0.0
> Ahg926848 jgi|Araly1|926848|scaffold_202409.1
Length=1812
Score = 2789 bits (1510), Expect = 0.0
Identities = 1716/1814 (95%), Gaps = 20/1814 (1%)
Strand=Plus/Plus
Query 154 TGTTTTAGTTCTATACATTATGGGGAAGTCTACAAAATGGTTGAAGAATGTATTGCTTGG 213
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 4 TGTTTTAGTTCCATACATTATGGGGAAGTCTACAAAGTGGTTGAAGAATGTATTGCTTGG 63
Query 214 GaaaaaaaCTTCTAAATCTAGTGGTTCCAAA-GACAAAGAGAGAGTTGTGAGTGGAAAAG 272
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 64 AAAAAAAACTTCTAAATCTAGTGGTTCCAAAGGA-AAAGAGAGAGTTGTGAGTGGAAATG 122
Query 273 AGGTACTGGTTACTTCAAAGGTGGAAGAATCAGATGTGGTATCAGATCTTCCATCTTTTG 332
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 123 AGGTACTGGTTACTTCAAAGGTAGAAGAATCAGATGTGGTATCAGATCTTCAATCTTTCG 182
Query 333 AAGTTGCAGAGACCAATACCGTTGATAGAAGTGGTGGTATGTTAGAGACTCAAAATGTAG 392
|||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||
Sbjct 183 CAGTTGCAGAGACCAATACAGTTGATAGAAGCAGTGGTATGTTAGAGACGCAAAATGTA- 241
Query 393 GA-CCTGAAGAGATCTCAGATGATGAAATTGAGCTTCCTGAAGGAAAATCAACAGATTCT 451
|| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 242 GAGCCTGAAGAGATCTCAGATGATGAAATTGAGCTTCCTGAGGGAAAACCAACAGATTCT 301
Query 452 CAGAATGTTGCACCTGTTCAAGATCATTCATTATCTGATGCAGAGAGAATCCAACGAGAG 511
|||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| ||||
Sbjct 302 CAGAATGTTGCACCTGTTCAAGATAATTCAGTATGTGATGCAGAGAGAATCCAACAAGAG 361
Query 512 ATTGCAGCAACGTCTGTGCAGGCTGCGTTTAGAGGTTACTTGGCTCGGCGTGCTTTTTGG 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 ATTGCAGCAACGTCTGTGCAGGCTGCGTTTAGAGGTTACTTGGCTCGGCGTGCTTTTTGG 421
Query 572 GCACTCAAAGGCATAATAAGGCTACAAGCGCTTATCCGTGGTCACCTTGTTAGGAGACAA 631
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 422 GCACTCAAAGGCATAATAAGGCTACAAGCACTTATCCGTGGTCACCTGGTTAGGAGACAA 481
Query 632 GCTGTTGCAACTCTTTTCTCTGTCATGGGAATTGTCAGGTTGCAAGCATTTGCTCGAGGA 691
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 482 GCTGTTGCAACTCTTTTCTCTATCATGGGAATTGTCAGGTTGCAAGCATTTGCTCGAGGA 541
Query 692 AGAGAGATCAGGAAGTCCGACATTGGAGTTCAAGTTTATAGGAAATGCAGATTGCAGCTA 751
||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||
Sbjct 542 AGAGAGATCAGGAAGTCTGATATTGGAGTTCAAGTTTATAGGAAATGCAGATTGCCGCTG 601
Query 752 CTTCAGGGGAACAAGCTTGCAAATCCTACAGATGCTTACCTTGGAATCAAGAAACTAACA 811
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CTTCAGGGGAGCAAGCTTGCAAATCCTACAGATGCTTACCTTGGAATCAAGAAACTAACA 661
Query 812 GCCAATGCTTTTGCTCAGAAGCTTCTCGCTTCATCACCAAAAGTGCTACCTGTACACGCA 871
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GCCAATGCTTTTGCTCTGAAGCTTCTCGCTTCATCACCAAAAGTGCTACCTGTACACGCC 721
Query 872 TATGATACATCCAATCCAAACTCAAACTTGATCTGGTTAGAGAACTGGTCAGCCTCATGC 931
|||||| ||||| ||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 722 TATGATTCATCCGATCCAGACTCAAACTTGATTTGGTTAGAGAACTGGTCAGCCTCATGC 781
Query 932 TTCTGGAAACCAGTTCCTCAACCGAAGAAAACGATAAGCAGAAAACCTCAGAACAGGCTT 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 782 TTCTGGAAACCAGTTCCTCAACCGAAGAAAACGATAAGCAGAAAACCTCAGAACAAGCTT 841
Query 992 TTAGTCGAGGCTGAGTCTGCTAAACCCAAGAAGAGTGTCCGTAAAGTTCCTGCTTCAAAC 1051
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 842 TTAGTCGAGGCTGAATCTGCTAAACCCAAGAAGAGTGTCCGTAAAGCTCCTGCTGCAAAC 901
Query 1052 TTTGAAAGTTCCTCAGTACAGACATCTTTTGAGTTTGAGAAACCCAAACGCAGTTTCCGG 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TTTGAAAGTTCCTCAGTACAGACATCTTTTGAGTTTGAGAAACCCAAACGCAGTTTCCGG 961
Query 1112 AAAGTTTCAAGCCAGTCGATAGAGCCACCCGCTGTCGAAGATCCTCAGATTGAACTTGAA 1171
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 962 AAAGTTTCAAGCCAGTCAATAGAGCCACCTGCTGTCGAAGATCCTCAGATTGAACTTGAA 1021
Query 1172 AAGGTTAAACGTAGCTTGAGGAAGGTACATAATCCTGTAGTTGAGAGCTCTATCCAACCT 1231
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1022 AAAGTTAAACGTAGCTTGAGGAAGGTACATAATCCTGTAGTTGAAAGCTCTATCCAACCT 1081
Query 1232 CAACGATCCCCTCGTAAGGAAGTCGAGAAGCCAAAGCTTGGCGTTG-AGAAGACAAGGGA 1290
|||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |||
Sbjct 1082 CAACGATCCCCTCGTAAGGAAGTCGAGAAGCCAAAGCTTGGCGTAGTA-AAGACAATGGA 1140
Query 1291 ATCATCATATCCGCTGGTTCATGAAACTGCAGAAGAACCTGTGAATGTTTGTGATGAAAA 1350
||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1141 ATCATCATATCCGATGGTCCATGAAACTGCAGAAGAACCTGTGAATGTTTGTGACGAAAA 1200
Query 1351 GAAAAAGCAAGAAATTTCC-GAACAGCCTGAGGAGGAGGTACATGCTCTTGAGATGGAAG 1409
|||||||||||||| | || ||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1201 GAAAAAGCAAGAAA-TGCCTGAACAGCCTAAGGAGGAGGTACATGTTCTTGAGATGGAAG 1259
Query 1410 TACATACTCCTGGACCATTAGAAACTAATGAAGCACTTGATTCCTCACTGGTCAACCAAA 1469
||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||| |
Sbjct 1260 TACATACTCTTGGACCATTAGAAACCAATGAAGCACTTGACTCCTCACTGGTAAACCATA 1319
Query 1470 TTGACAGCAATGAAAAAGCCATGGTTGAGGAAAAACCCTCAATGGAAAAGGATACCAAAG 1529
| |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1320 TCGACAGCAACGAAAAAGCAATAGTTGAGGAAAAACCCTCAATGGAAAAGGATACCAAAG 1379
Query 1530 AAGAAAAGACTCCCAAACCAAACAATAAAGAGAATTCCGCTGGGAAGGAGAACCAGAAA- 1588
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AAGAAAAGACTCCCAAACCAAACAATAAAGAGAATTCCGCTGGGAAGGAGAACCAGAAAC 1439
Query 1589 TCCAGGAAAAAGGGTTCAGCTACTAGCAAGACTGAGCGTGAAGAGAGTAATGGGCATCA- 1647
|| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1440 TC-AGGAAAAAGGGTTCAGCTATTAGCAAGACCGAGCGTGAAGAGAGTAATGGGCATCAT 1498
Query 1648 CGAGACTAGCCCATCAATCCCAAGCTATATGCAAGCAACTAAATCGGCGAAAGCAAAGCT 1707
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1499 C-AGACTAGCCCATCAATCCCAAGCTATATGCAAGCAACTAAATCGGCCAAAGCAAAGCT 1557
Query 1708 AAGGCTTCAAGGCTCACCAAAGTCTGCGGAGCAAGATGGAACTGAGAAAGCCACTGTTCC 1767
||| | |||||||||||||||||||| |||| |||||| ||||||||||||| ||||||
Sbjct 1558 GAGGATGCAAGGCTCACCAAAGTCTGCTGAGCCAGATGGGACTGAGAAAGCCAGTGTTCC 1617
Query 1768 CAGACGTCACTCTCTACCATCTCCAGGTAATGG--T----AGGATCACTTCTCACTCTCC 1821
||| ||||||||||||||||||||||||||||| | |||||||| ||||| |||||
Sbjct 1618 CAGGCGTCACTCTCTACCATCTCCAGGTAATGGCATTGGCAGGATCACCTCTCAATCTCC 1677
Query 1822 AAGAACAACGAGACTCGCAAACTCAGGTGACAAAACCGGGAATAAGAAGGAGAAACCTCT 1881
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1678 AAGAACAACGAGACTCGCAAACTCAGGTGACAAAACCAGGAATAAGAAGGAGAAACCTCT 1737
Query 1882 TCTGTCGTCCCGAGAAGGAAACGCCAAGACAACTCC-AGCAGAGCGGAAGAGGTGATTGG 1940
||| ||||||| ||||||||| ||||||||||| || | ||||||||||||||||||||
Sbjct 1738 TCTCTCGTCCCAAGAAGGAAATGCCAAGACAACCCCGA-CAGAGCGGAAGAGGTGATTGA 1796
Query 1941 TTCCAGCGGAAAGT 1954
|||| || ||||||
Sbjct 1797 TTCCTGCAGAAAGT 1810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85664961005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5