BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74700.1
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476606 jgi|Araly1|476606|fgenesh2_kg.2__1736__AT1G74700.1 1428 0.0
> Ahg476606 jgi|Araly1|476606|fgenesh2_kg.2__1736__AT1G74700.1
Length=888
Score = 1428 bits (773), Expect = 0.0
Identities = 851/889 (96%), Gaps = 3/889 (0%)
Strand=Plus/Plus
Query 71 AACAGTGAGATGGAGAAGAAGAAAGCAATGCAAATTGAAGGTTACCCGATCGAGGGATTG 130
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1 AACAGTGAGATGGAGAAGAAGAAAGCAATGCAAATCGAAGGTTATCCGATCGAGGGATTG 60
Query 131 TCGATTGGTGGGCACGAGACGTGCATCATATTTCCATCTCTTCGGATAGCTTTCGACATT 190
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TCGATTGGTGGGCACGAGACGTGCATCATTTTTCCATCTCTTCGGATAGCTTTCGACATT 120
Query 191 GGTCGTTGCCCACATCGCGCAATTTCTCAAGACTTCCTCTTCATCTCTCACTCTCACATG 250
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GGTCGTTGCCCACATCGCGCAATTTCTCAAGACTTCCTCTTTATCTCTCACTCTCACATG 180
Query 251 GATCATATCGGTGGATTACCAATGTATGTTGCTACTAGAGGCTTGTACAAAATGAAGCCT 310
||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 181 GATCACATCGGTGGATTACCAATGTATGTTGCGACTAGAGGCTTATACAAAATGAAGCCT 240
Query 311 CCAACGATTATAGTACCCGCATCCATTAAAGAAACTGTTGAGAGTTTATTCGAAGTTCAC 370
|||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||
Sbjct 241 CCAACGATTATAGTACCCAAATCCATTAAAGAAACTGTCGAGAGTTTGTTCGAAGTTCAC 300
Query 371 AGAAAGTTAGATTCTTCAGAGCTAAAGCACAATCTTGTTGGCTTGGACATAGGGGAGGAG 430
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 AGAAAGTTAGATTCTTCAGAGCTAAAGCACAATCTTGTTGGCTTGGACATAGGAGAGGAG 360
Query 431 TTTATTATAAGGAAAGATCTCAAAGTCAAAGCCTTTAAGACATTCCATGTCATCCAAAGC 490
||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||||||||
Sbjct 361 TTTATTATAAGGAAAAATCTTAAAGTGAAAGCCTTTAAGACATACCATGTCATCCAAAGC 420
Query 491 CAGGGTTATGTAGTGTATTCAACTAAATATAAACTCAAGAAGGAATATATTGGCCTATCT 550
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||
Sbjct 421 CAGGGTTATGTAGTGTATTCAACTAAACATAAACTCAAGCAGGAATATATTGGCCTGTCT 480
Query 551 GGAAATGAAATTAAGAACTTGAAGGTTTCAGGTGTTGAGATTACAGACAGCATAATAACT 610
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 481 GGAAATGAAATTAAGAACTTGAAGGCTTCAGGTGTTGAGATTACAGACAGCATAACAACT 540
Query 611 CCTGAAGTTGCTTTTACGGGAGATACAACGTCGGATTTTGTAGTTGATGAAACTAATGCT 670
|||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 541 CCTGAAGTTGCTTTTACGGGAGATACAACGGCAGATTTTGTAGTTGATGAAAGTAATGCT 600
Query 671 GATGCTCTCAAGGCAAAGGTTCTCGTCATGGAGAGCACATTTCTTGATGATTCGGTATCG 730
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GATGCTCTCAAGGCTAAGGTTCTCGTCATGGAGAGCACATTTCTTGATGATTCGGTATCC 660
Query 731 GTAGAGCATGCGAGAGATTATGGACATATCCATATATCTGAGATAGTAAATCATGCTGA- 789
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct 661 GTAGAGCATGCGAGAGATTATGGACATATCCATTTATCTGAGATAGTTAATCATGCT-AC 719
Query 790 AAAGTTTGAAAACAAAGCAATCCTGCTAATCCACTTTTCGGCTCGGTATACAGTGAAGGA 849
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 AAAGTTTGAAAACAAAGCAATCCTGCTAATCCACTTTTCGGCCCGGTATACAGTGAAGGA 779
Query 850 AATCGAAGATGCGGTTTCTGCATTGCCTCCACCTTTAGAGGGACGTGTGTTTGCACTAAC 909
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 AATCGAAGATGCGGTTTCTGCATTGCCTCCACCTTTAGAGGGTCGTGTGTTTGCACTAAC 839
Query 910 ACAAGGATTCTAAACATTATAA-CACTCTTATAGGTTTTACATACTTTT 957
|||||||||||||||| || || ||||||| ||| ||||||| ||||||
Sbjct 840 ACAAGGATTCTAAACAGTAAAAACACTCTTGTAGATTTTACACACTTTT 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37512950328
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5