BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74710.2
Length=2120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476608 jgi|Araly1|476608|fgenesh2_kg.2__1738__AT1G74710.1 2549 0.0
> Ahg476608 jgi|Araly1|476608|fgenesh2_kg.2__1738__AT1G74710.1
Length=1850
Score = 2549 bits (1380), Expect = 0.0
Identities = 1566/1657 (95%), Gaps = 8/1657 (0%)
Strand=Plus/Plus
Query 96 ATGGCTTCACTTCAATTTTCTTCTCAGTTTCTGGGCTCAAACACTAAAACACACAGCTCT 155
||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCATCGCTTCAATTTTCTTCTCAGTTTCTGGGCTCAAACACTAAAAAACACAGCTCC 60
Query 156 ATCATTTCCATCTCTCGTAGTTACTCTCCAACTCCATTCACTAGATTCTCCCGCAAGAAG 215
|| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 ATAATCTCCATCTCTCGTAGTTACTCTCCAACCCCATTCACTAGATTCTCCCGCAAGAAG 120
Query 216 TATGAGTCATGTTCGATGTCTATGAATGGTTGTGATGGAGATTTCAAGACGCCACTTGGT 275
|||||||| ||||| |||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 121 TATGAGTCGTGTTCCATGTCTATGAATGGTTGTGAGGGAGATTTCAGGACGCCTCTTGGT 180
Query 276 ACAGTGGAGACAAGGACTATGACTGCTGTTTTATCTCCGGCAGCCGCCACTGAAAGGCTA 335
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 ACAGTGGAGACAAGGACTATGACTGCTGTCTTATCTCCGGCAGCCGCCACTGAAAGGCTA 240
Query 336 ATCTCCGCCGTCTCTGAACTCAAATCTCAACCTCCGTCGTTTTCCTCCGGCGTCGTTCGG 395
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 ATCTCCGCCGTTTCTGAACTCAAATCTCAACCTCCGTCGTTTTCCTCCGGCGTCGTCCGG 300
Query 396 TTACAGGTTCCAATTGACCAGCAAATCGGAGCAATTGATTGGCTTCAAGCCCAGAATGAG 455
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 TTACAGGTTCCAATTGACCAGCAAATCGGAGCAATCGATTGGCTTCAAGCCCAGAATGAG 360
Query 456 ATTCAGCCTCGCTGTTTCTTCTCTCGTCGCAGTGACGTTGGTCGTCCCGATCTTCTTCTC 515
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 361 ATTCAGCCTCGCTGTTTCTTCTCTCGTCGGAGTGACGTTGGTCGTCCCGATCTCCTCCTC 420
Query 516 GATCTAGCTAACGAGAACGGAAACGGAAACGGAAACGGAACAGTGTCATCTGATCGTAAT 575
|||||||||||||||||| | | | | ||||||||| ||||||| ||||||||||||
Sbjct 421 GATCTAGCTAACGAGAAC-G--A--G-AGCGGAAACGGGTCAGTGTCTTCTGATCGTAAT 474
Query 576 CTGGTTAGCGTTGCTGGTATCGGCTCTGCAGTTTTCTTCCGTGACCTTGATCCTTTCTCT 635
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 475 CTGGTTAGCGTTGCTGGTATCGGTTCTGCAGTTTTCTTCCGTGACCTTGATCCCTTCTCT 534
Query 636 CATGACGATTGGAGATCCATCAGAAGGTTTTTGTCTTCAACGTCACCTCTGATTCGTGCC 695
||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 535 CATGATGATTGGAGATCCATCCGGAGGTTTTTGTCTTCAACGTCACCTCTGATTCGTGCC 594
Query 696 TATGGTGGTATGCGTTTTGATCCTAATGGCAAGATCGCTGTTGAATGGGAACCTTTTGGT 755
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 595 TATGGTGGTATGCGTTTTGATCCTAATGGCAAGATCGCTGTGGAATGGGAACCTTTTGGT 654
Query 756 GCATTTTACTTTTCAGTCCCTCAGGTTGAGTTTAATGAGTTTGGTGGAAGTTCAATGTTG 815
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 655 GCCTTTTACTTTTCAGTGCCTCAGGTTGAGTTTAATGAGTTTGGTGGAAGTTCAATGCTG 714
Query 816 GCTGCAACTATTGCTTGGGATGATGAACTCTCTTGGAC-TCTGGAAAATGCTATTGAAGC 874
||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 715 GCTGCAACTGTTGCTTGGGATGATGAACTCTCTTGGACGT-TGGAAAATGCTATTGAAGC 773
Query 875 ACTCCAGGAGACTATGCTTCAAGTTTCTTCTGTTGTAATGAAGTTGAGAAACAGATCTTT 934
||| ||||||||||||||||| |||||||||||||||| |||||| |||||||||||| |
Sbjct 774 ACTTCAGGAGACTATGCTTCAGGTTTCTTCTGTTGTAAAGAAGTTAAGAAACAGATCTCT 833
Query 935 AGGAGTATCTGTTTTAAGCAAGAATCATGTTCCTACCAAAGGAGCTTATTTCCCTGCTGT 994
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 834 AGGAGTATCTGTTTTAAGCAAGAATCATGTTCCTACCAAAGGGGCTTATTTCCCTGCTGT 893
Query 995 AGAGAAGGCTTTAGAGATGATTAACCAGAAAAGTTCACCCCTTAACAAGGTTGTTCTTGC 1054
|||||||||||| ||||||||||| || |||||||| | ||||||||||| || |||||
Sbjct 894 AGAGAAGGCTTTGGAGATGATTAAGCAAAAAAGTTCGTCTCTTAACAAGGTCGTGCTTGC 953
Query 1055 TCGTAACAGCAGGATAATTACGGATACCGACATTGATCCCATTGCTTGGCTAGCACAGTT 1114
||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 954 TCGCAACAGCAGGATTATTACGGATACCGATATTGATCCCATTGCTTGGCTAGCACAGTT 1013
Query 1115 ACAGCGTGAAGGGCATGATGCATATCAGTTCTGTCTTCAACCACCTGGTGCACCAGCTTT 1174
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1014 ACAGCGTGAAGGACATGATGCATATCAGTTCTGTCTTCAACCACCTGGTGCACCAGCGTT 1073
Query 1175 TATCGGAAACACGCCTGAGAGACTATTCCAAAGGACTCAATTAGGTGTCTGCAGTGAAGC 1234
||| |||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct 1074 TATTGGAAACACGCCTGAGAGACTTTTCCAAAGGAATCAATTAGGTGTCTGTAGTGAAGC 1133
Query 1235 TTTGGCTGCAACTAGGCCTAGAGCTGCTTCTAGTGCTCGTGATATGGAGATAGAGCGTGA 1294
|||||||||||||||||||||| ||||||| || || |||||||||||||||||||||||
Sbjct 1134 TTTGGCTGCAACTAGGCCTAGATCTGCTTCAAGGGCGCGTGATATGGAGATAGAGCGTGA 1193
Query 1295 CTTACTAACCAGTCCGAAAGACGACCTCGAGTTCTCTATCGTACGAGAGAATATAAGAGA 1354
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1194 CTTACTAACCAGTCCGAAAGACGACCTTGAGTTCTCTATTGTACGAGAGAATATAAGAGA 1253
Query 1355 AAAGTTAAACGGTATATGTGACAGAGTTGTTGTCAAGCCTCAAAAAACTGTGAGGAAGCT 1414
|||||||||||| ||||||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct 1254 AAAGTTAAACGGCATATGTGACAGGGTCGTTGTTAAGCCCCAAAAAACTGTGAGGAAGCT 1313
Query 1415 TGCAAGAGTGCAACATCTATATTCTCAATTGGCAGGGAGACTTACGAAGGAAGATGATGA 1474
||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||||| ||
Sbjct 1314 TGCAAGAGTGCAACACCTATATTCGCAATTGGCAGGGAAACTTACGAACGAAGATGACGA 1373
Query 1475 GTATAAAATATTGGCTGCTCTGCATCCAACTCCAGCTGTTTGTGGGCTTCCAGCAGAAGA 1534
|| ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GTTTAACATCTTGGCTGCTCTCCATCCAACTCCAGCTGTTTGTGGGCTTCCAGCAGAAGA 1433
Query 1535 AGCAAGGCTTTTGATTAAGGAGATAGAATCATTCGATAGAGGAATGTATGCGGGACCTAT 1594
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1434 AGCAAGGCTTTTGATTAAGGAAATAGAATCATTCGATAGAGGAATGTATGCCGGACCTAT 1493
Query 1595 TGGATTTTTTGGTGGCGAGGAGAGTGAATTTGCAGTCGGGATCAGATCAGCTCTAGTCGA 1654
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1494 TGGGTTTTTTGGTGGCGAGGAGAGTGAATTTGCAGTCGGAATCAGATCAGCTCTAGTCGA 1553
Query 1655 AAAGGGTCTTGGGGCATTGATCTATGCGGGGACAGGGATAGTAGCTGGAAGTGACCCATC 1714
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1554 GAAGGGTCTTGGGGCATTGATCTATGCCGGGACAGGGATAGTAGCGGGAAGTGACCCATC 1613
Query 1715 TTCAGAGTGGAATGAGCTTGATCTTAAGATATCTCAG 1751
|||||||||||||||||||||||||||||||||||||
Sbjct 1614 TTCAGAGTGGAATGAGCTTGATCTTAAGATATCTCAG 1650
Score = 152 bits (82), Expect = 1e-35
Identities = 88/91 (97%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 1844 CAGTTCACCAAGTCAATTGAATATGAAGCAACAACATCTCTACAGGCGATTAATTGAAGA 1903
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1648 CAGTTCACTAAGTCAATTGAATATGAGGCAACAACATCTCTGCAGGCGATTAATTGAAGA 1707
Query 1904 AAGAGTAACATTTGTATTTGATTGTTTTGTT 1934
|||||||||||||||||||||||||||||||
Sbjct 1708 AAGAGTAACATTTGTATTTGATTGTTTTGTT 1738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79760973030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5