BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74720.1
Length=3757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476609 jgi|Araly1|476609|fgenesh2_kg.2__1739__AT1G74720.1 5177 0.0
> Ahg476609 jgi|Araly1|476609|fgenesh2_kg.2__1739__AT1G74720.1
Length=3455
Score = 5177 bits (2803), Expect = 0.0
Identities = 3130/3287 (95%), Gaps = 25/3287 (1%)
Strand=Plus/Plus
Query 94 ACTACGATGAACACGACGCCGTTTCACTCGGATCCTCCGCCGTCGAGGATCCAGCGTAAG 153
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ACTACGATGAACACGACGCCGTTTCACTCGGATCCTCCGCCTTCGAGGATCCAGCGTAAG 60
Query 154 CTCGTTGTCGAAGTTGTTGAAGCTCGTAATATTCTCCCTAAAGATGGTCAAGGAAGCTCT 213
||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 61 CTCGTCGTCGAGGTTGTTGAAGCTCGGAATATTCTCCCTAAAGATGGCCAAGGAAGCTCA 120
Query 214 AGCGCTTACGTCGTTGTCGATTTCGATGCTCAGAAGAAACGAACCTCCACTAAGTTCCGT 273
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCGCTTACGTCGTTGTTGATTTCGATGCTCAGAAGAAACGAACCTCCACTAAGTTCCGT 180
Query 274 GACCTAAACCCTATTTGGAACGAGATGCTTGATTTCGCCGTCTCCGATCCCAAAAACATG 333
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 GACCTTAACCCTATTTGGAACGAGATGCTTGATTTCACCGTCTCCGATCCCAAAAACATG 240
Query 334 GATTACGACGAGCTCGATATCGAGGTTTATAACGATAAAAGATTTGGTAACGGAGGTGGC 393
|| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GACTACGACGAGCTAGATGTCGAGGTTTATAACGATAAAAGATTTGGTAACGGAGGTGGC 300
Query 394 CGGAAGAATCATTTTCTCGGTAGGGTTAAGATCTATGGAAGCCAGTTCTCGCGAAGAGGT 453
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGGAAAAATCATTTTCTCGGTAGGGTTAAGATCTATGGAAGCCAGTTCTCGCGAAGAGGT 360
Query 454 GAAGAAGGTCTTGTGTATTTCCCTTTGGAGAAGAAGAGTGTGTTCAGCTGGATTCGCGGC 513
||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 361 GAAGAAGGTCTTGTGTATTTCCCCTTGGAGAAGAAGAGTGTATTCAGTTGGATTCGCGGC 420
Query 514 GAGATTGGACTCAAAATCTACTATTACGACGAAGCCGCCGACGAAGACACGGCGGGTGGA 573
||||||||||| || || ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 GAGATTGGACTGAAGATTTACTATTACGACGAAGCCGCCGACGAAGACACGGCGGTTGGA 480
Query 574 GGTGGAGGacagcaacaacaacagcaacagcaacaatttcatccgccgcaacaagaagcc 633
|| ||||| | || |||| | | | | | |||||||||||||||||||||||||||||
Sbjct 481 GGCGGAGG-C--CAGCAAC-A-A-C-A-A-CAACAATTTCATCCGCCGCAACAAGAAGCT 531
Query 634 gatgaacaacaacaCCAGCAACAATTTCATCCTCCGCCGCAGCAGATGATGAATATACCA 693
|||| ||||||| | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 532 GATG---AACAACA--A-CAACAATTTCATCCTCCGCCGCAGCAGATGATGAATTTACCA 585
Query 694 CCGGAGAAACCTAATGTAGTTGTGGTTGAAGAAGGTAGGGTTTTCGAATCGGCTCAGAGT 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 CCGGAGAAACCTAATGTAGTTGTGGTTGAAGAAGGTAGGGTTTTCGAATCGGCTCAGAGT 645
Query 754 CAGCGCTATACAGAGACACATCAGCAACCTCCGGTGGTTATTGTTGAAGAATCACCACCG 813
|| ||||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 646 CATAGCTATCCGGAGACACATCAGCAACCTCCGGCAGTTATTGTTGAAGAATCACCACCG 705
Query 814 CAGCATGTAATGCAAGGTCCAAATGATAACCATCCTCACCGAAATGATAACCATCCTCAA 873
||||| ||||||||||||||||||||||||| |||||| ||||||||||| ||||||||
Sbjct 706 CAGCAGGTAATGCAAGGTCCAAATGATAACCGTCCTCAACGAAATGATAAGTATCCTCAA 765
Query 874 CGGCCACCGTCTCCGCCGCCACCTCCATCGGCTGGGGAAGTACATTATTATCCACCGGAA 933
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 766 CGGCCACCGTCTCCGCCGCCACCTCCATCGGCGGGGGAAGTACATTATTATCCACAGGAG 825
Query 934 GTGAGGAAGATGCAAGTAGGAAGACCTCCCGGCGGAGATAGAATTAGGGTTACGAAGAGA 993
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GTGAGGAAGATGCAAGTAGGAAGACCTCCCGGCGGAGATAGAATTAGGGTTACGAAGAGG 885
Query 994 CCACCGAATGGAGATTATTCACCTAGGGTTATCAATAGCAAAACTGGAGGAGGAGAGACG 1053
||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 886 CCACCGAATGGGGATTATTCACCTAGGGTTATCAATAGCAAGATTGGAGGAGGAGAGACG 945
Query 1054 ACGATGGAGAAGAAGACTCATCATCCTTACAATCTTGTTGAGCCAATGCAGTATCTCTTC 1113
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 946 ACGATGGAGAAGAAGACTCATCATCCATACAATCTTGTTGAGCCAATGCAGTATCTCTTC 1005
Query 1114 GTTCGGATTGTGAAGGCGCGTGGCTTACCACCTAACGAGAGCGCGTATGTTAAGGTACGG 1173
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1006 GTTCGGATTGTGAAGGCGCGTGGCTTGCCACCAAACGAAAGCGCGTATGTTAAGGTACGG 1065
Query 1174 ACGTCGAACCATTTCGTCAGGTCTAAACCGGCCGTTAACCGGCCCGGCGAATCGGTTGAT 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 ACGTCGAACCATTTCGTCAGGTCTAAACCGGCCGTTAACCGGCCCGGCGAATCGGTTGAT 1125
Query 1234 TCACCGGAGTGGAATCAGGTTTTTGCTCTTGGTCATAACCGGTCTGATTCCGCTGTAACT 1293
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 TCTCCGGAGTGGAATCAGGTTTTTGCTCTTGGTCATAACCGGTCTGATTCCGCTGTAACC 1185
Query 1294 GGTGCGACTCTTGAGATCTCTGCTTGGGATGCTTCGTCGGAGAGTTTTCTCGGAGGAGTT 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 GGTGCGACTCTTGAGATCTCTGCTTGGGATGCTTCGTCGGAGAGTTTTCTCGGAGGAGTT 1245
Query 1354 TGTTTTGATCTCTCTGAGGTTCCGGTTCGTGACCCGCCGGATAGTCCGCTTGCTCCTCAG 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TGTTTTGATCTCTCTGAGGTTCCGGTTCGTGACCCGCCGGATAGTCCGCTTGCTCCTCAG 1305
Query 1414 TGGTATCGGCTCGAAGGCTCCGGCGCGGATCAGAACTCTGGGAGAATTTCCGGTGACATT 1473
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1306 TGGTATCGGCTTGAAGGCTCCGGCGCGGATCAGAACTCTGGGAGAGTTTCCGGTGATATT 1365
Query 1474 CAGCTCTCTGTTTGGATTGGTACTCAGGTAGATGAGGCATTTCCGGAGGCTTGGAGCTCT 1533
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1366 CAGCTCTCTGTTTGGATTGGTACTCAGGTTGATGAGGCATTTCCGGAGGCGTGGAGCTCC 1425
Query 1534 GATGCTCCGCATGTAGCTCACACGCGTTCTAAGGTGTATCAATCGCCGAAACTTTGGTAC 1593
||||||||||||||||||||||| || || |||||||||||||||||||| |||||||||
Sbjct 1426 GATGCTCCGCATGTAGCTCACACACGCTCAAAGGTGTATCAATCGCCGAAGCTTTGGTAC 1485
Query 1594 TTGAGAGTGACGGTTCTTGAGGCACAGGATTTACACATAGCTCCTAATCTCCCGCCGTTG 1653
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1486 TTGAGAGTGACGGTTCTTGAGGCACAGGATTTACACATTGCTCCTAATCTTCCGCCCTTG 1545
Query 1654 ACTGCGCCTGAGATTCGTGTGAAAGCTCAATTAGGGTTTCAGTCGGCGCGTACAAGAAGA 1713
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1546 ACTGCGCCTGAGATTCGTGTGAAAGCTCAATTAGGGTTTCAGTCGGCGCGTACTAGACGA 1605
Query 1714 GGCTCAATGAATAACCACAGTGGTTCGTTTCATTGGCATGAGGATATGATCTTTGTTGCT 1773
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1606 GGCTCAATGAATAACCACAGTGGTTCGTTTCATTGGCATGAGGATATGATCTTTGTCGCT 1665
Query 1774 GGAGAGCCGTTGGAAGATTGCTTGGTTCTGATGGTGGAAGACCGGACGACTAAAGAAGCA 1833
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 GGAGAGCCTTTGGAAGATTGCTTGGTTCTGATGGTGGAAGACCGGACGACTAAAGAAGCA 1725
Query 1834 ACACTTCTAGGACATGCCATGATCCCAGTGAGCTCCATCGAGCAGCGAATTGATGAGCGT 1893
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1726 ACGCTTCTAGGACATGCCATGATCCCAGTGAGCTCCATCGAGCAGCGAATTGATGAGCGT 1785
Query 1894 TTTGTGCCGTCGAAATGGCACACTCtggaaggagaaggtggaggtggaggtggaggagga 1953
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||
Sbjct 1786 TTTGTGCCGTCGAAATGGCACTCTCTGGAAGGAGAAGGTGGAGGTGGAGGCGGAGGTGGA 1845
Query 1954 ggacctggagg---tgg---tggtggtggtggaCCTTATTGTGGAAGGATTAGCCTTAGA 2007
||| ||||| ||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1846 GGAGGAGGAGGACCTGGAAGTGGTGGTGGTGGACCTTATTGTGGAAGGATTAGCCTAAGA 1905
Query 2008 CTTTGTCTCGAAGGTGGGTATCATGTGCTTGAAGAGGCGGCGCATGTATGCAGCGATTTC 2067
|||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 1906 CTTTGTCTTGAAGGTGGGTATCACGTGCTTGAAGAGGCGGCACATGTGTGCAGCGATTTC 1965
Query 2068 CGTCCGACGGCTAAGCAGCTATGGAAACCGCCGATTGGAATACTTGAGTTGGGGATTCTT 2127
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1966 CGTCCAACAGCTAAGCAGCTCTGGAAACCGCCGATTGGAATACTTGAGTTGGGGATTCTT 2025
Query 2128 GGAGCTCGTGGGTTGTTGCCGATGAAGGCGAAAAACGGAGGGAAAGGTTCCACTGATGCT 2187
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2026 GGAGCTCGGGGGTTGTTGCCGATGAAGGCAAAAAACGGAGGGAAAGGTTCCACTGATGCT 2085
Query 2188 TATTGTGTTGCTAAGTACGGGAAGAAATGGGTCAGGACTCGAACCATAACAGACAGTTTT 2247
|| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2086 TACTGTGTTGCTAAGTACGGCAAGAAATGGGTCAGGACTCGAACTATAACAGACAGTTTC 2145
Query 2248 GACCCGAGGTGGCACGAGCAGTATACGTGGCAGGTTTATGATCCTTGCACCGTGCTAACT 2307
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146 GACCCGAGGTGGCACGAGCAGTATACGTGGCAGGTTTATGATCCTTGCACCGTGCTAACC 2205
Query 2308 GTTGGAGTCTTCGACAATTGGAGGATGTTCTCTGACGCCTCCGATGATAGACCTGACACA 2367
||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct 2206 GTTGGAGTCTTCGACAATTGGAGGATGTTCTCTGATGTCTCCGATGATAGACCCGACACA 2265
Query 2368 CGGATTGGGAAGATACGGATCCGGGTGTCGACGTTAGAGAGCAACAAAGTGTACACCAAT 2427
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2266 CGGATTGGGAAGATACGGATCCGGGTTTCGACTTTAGAGAGCAACAAAGTGTACACCAAT 2325
Query 2428 TCATATCC-TCTGTTGGTTTTGTTACCTAGCGGTATGaaaaaaaTGGGTGAAATTGAAGT 2486
|||||||| | || |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2326 TCATATCCGT-TGCTGGTTTTGTTACCTAGCGGTATGAAAAAAATGGGTGAAATCGAAGT 2384
Query 2487 GGCAGTCCGGTTTGCATGCCCGTCTCTGCTGCCTGATGTTTGTGCAGCTTATGGACAGCC 2546
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2385 GGCAGTCCGGTTCGCATGCCCGTCGCTGCTGCCTGATGTTTGTGCAGCTTATGGACAGCC 2444
Query 2547 GCTTCTGCCTCGGATGCACTACATAAGGCCTCTAGGTGTAGCACAACAAGATGCATTAAG 2606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2445 GCTTCTGCCTCGGATGCACTACATAAGGCCTCTAGGTGTAGCACAACAAGATGCATTAAG 2504
Query 2607 AGGGGCCGCCACGAAAATGGTAGCAGCTTGGCTGGCTCGAGCAGAACCACCATTGGGACC 2666
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2505 AGGCGCCGCCACGAAAATGGTAGCAGCTTGGCTGGCTCGAGCAGAACCACCATTGGGACC 2564
Query 2667 AGAGGTAGTTCGATATATGTTAGATGCAGATTCGCATGCATGGAGCATGAGGAAA-AGCA 2725
||||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||
Sbjct 2565 TGAGGTAGTTCGATATATGTTAGATGCAGATTCGCACGCGTGGAGCATGAG-AAAGAGCA 2623
Query 2726 AAGCGAATTGGTACAGAATTGTTGGTGTTTTAGCTTGGGCAGTGGGTTTAGCTAAGTGGT 2785
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2624 AAGCAAATTGGTATAGAATTGTTGGTGTTTTAGCTTGGGCAGTGGGTTTAGCTAAATGGT 2683
Query 2786 TGGATAATATCAGGCGGTGGAGGAATCCAGTGACGACGGTGCTAGTCCATATTCTATATC 2845
||||||||||| |||||||||||||||||||||| || ||| ||||||||||||| ||||
Sbjct 2684 TGGATAATATCCGGCGGTGGAGGAATCCAGTGACAACAGTGTTAGTCCATATTCTTTATC 2743
Query 2846 TGGTTCTTGTTTGGTACCCTGATTTGGTAGTCCCGACTGCATTCTTGTACGTGGTGATGA 2905
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2744 TGGTTCTTGTTTGGTATCCTGATTTGGTAGTCCCGACTGCATTCTTGTACGTGGTGATGA 2803
Query 2906 TCGGAGTTTGGTACTACCGGTTTAGACCCAAGATACCGGCTGGTATGGATATCCGCTTAT 2965
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2804 TCGGAGTTTGGTATTACCGGTTTAGGCCAAAGATACCGGCTGGTATGGATATCCGCTTAT 2863
Query 2966 CACAAGCTGAAACCGTCGATCCTGATGAGCTAGATGAAGAATTCGACACCATACCAAGCT 3025
||||||| || || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2864 CACAAGCCGAGACTGTCGATCCTGATGAGCTAGACGAAGAATTCGACACCATACCAAGCT 2923
Query 3026 CAAGGCGACCAGAAGTAATCCGAGCTAGGTACGACCGATTAAGGATCTTAGCAGTGAGGG 3085
| |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||
Sbjct 2924 CTAGGCGACCAGAAGTAATCCGAGCTAGATACGACCGGTTAAGGATCTTAGCGGTAAGGG 2983
Query 3086 TTCAGACCATTCTAGGAGATTTTGCAGCGCAAGGAGAACGGATTCAAGCGTTGGTTAGCT 3145
|||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 2984 TTCAGACCATTCTAGGCGATTTTGCAGCACAAGGCGAACGAATTCAAGCGTTGGTTAGCT 3043
Query 3146 GGAGAGATCCGAGAGCGACAAAGCTGTTCATAGCAATCTGTTTGGTAATCACAATAGTTC 3205
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 3044 GGAGAGATCCGAGAGCGACCAAGCTGTTCATAGCAATCTGTTTGGTGATCACAATAGTTC 3103
Query 3206 TGTATGCAGTTCCTGCGAAAATGGTGGCGGTGGCTCTAGGGTTTTATTATCTTCGGCATC 3265
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3104 TGTATGCAGTTCCTGCGAAAATGGTGGCGGTGGCTCTAGGGTTTTATTATCTCCGGCATC 3163
Query 3266 CGATGTTCCGAGACACAATGCCTACGGCTAGTCTCAATTTTTTCCGGCGGTTGCCAAGCT 3325
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3164 CGATGTTCCGAGACACAATGCCTACGGCGAGTCTCAATTTTTTCCGGCGGTTGCCAAGCT 3223
Query 3326 TGTCCGATCGACTCATCTAAGGAGAGAAAGATGTCAAGATAGTAAAT 3372
|||||||||| |||||||||||||||||||| ||||||| |||||||
Sbjct 3224 TGTCCGATCGGCTCATCTAAGGAGAGAAAGACGTCAAGAGAGTAAAT 3270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141954747290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5