BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74730.1
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476610 jgi|Araly1|476610|fgenesh2_kg.2__1740__AT1G74730.1 1173 0.0
> Ahg476610 jgi|Araly1|476610|fgenesh2_kg.2__1740__AT1G74730.1
Length=871
Score = 1173 bits (635), Expect = 0.0
Identities = 816/898 (91%), Gaps = 34/898 (4%)
Strand=Plus/Plus
Query 1 GTTGAAATCACAAAGACATCATCTGACGTGGCAGTTTCTCTGTCTATCAGAGTTTCAGAT 60
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 GTTGAAATTACAAAGACATCATCTGACGTGGCAGTTTCTCTGTCT-CCAGAGTTTCAGAT 59
Query 61 AGTGTGCCAACGGCGAAACAAGACACGAAAGAATCTCTAAAGAAATCATTTTCATCGCTT 120
||||||| ||||| ||||| | |||| | | || || |||| || ||| |
Sbjct 60 AGTGTGCGAACGGTGAAAC-A-ACAC--ACG-AT-TC-------ATCA--TT--TCG-AT 101
Query 121 CGCTTCGATTTTTCTTCAATGGCTGTCGTCGGCGCTCCAATATCGTCTCCGGCGGCTCAG 180
|| ||| || ||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 102 ---TT-GATCTTCCTTCAATGGCTGTCGTCGGCGCTCCGATATCGTCTCCGGCGACTCAC 157
Query 181 CTGCAGACACA-ATTTCTCTCCAATCCCATTCTCCCCCGCTTTCGCCGGTCTTTCTCCAC 239
||||| ||| | |||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 158 CTGCAAACA-AGATTTATCTCCAATCCCATTCTCCCTCGCTTTCGCCGGTCTTTCTCCAC 216
Query 240 CGGAAAATCACCAGCAACTTTCTCCGTCGTAGCTATGGCTCCCCAGAAAAAGGTGAACAA 299
||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 217 CGGAAAAGCACCAGCAACTTTCTCCGTCGTCTCCATGGCTCCCCAGAAAAAGGTGAACAA 276
Query 300 ATATGATGCCAAGTGGAAGAAACAATGGTACGGAGCTGGATTGTTTTTCGAAGGGAGTGA 359
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 277 GTATGATGCCAAGTGGAAGAAACAGTGGTACGGAGCTGGATTGTTCTTCGAAGGGAGTGA 336
Query 360 GCAAATAAACGTTGATGTTTTCAAGAAGCTGGAGAAGCGAAAAGTGTTGAGCAACGTTGA 419
|||||||||||| || |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 337 GCAAATAAACGTCGACGTTTTCAAGAAGCTGGAGAAGCGAAAAGTGCTCAGCAACGTTGA 396
Query 420 GAAATCTGGCCTGCTGTCAAAAGCAGAGGGGTTGGGACTCACATTGTCATCTCTTGAGAA 479
||||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 397 GAAATCTGGTCTGCTCTCTAAAGCAGAGGAGTTGGGACTCACATTGTCATCTCTTGAGAA 456
Query 480 GCTTAAAGTCTTCTCCAAAGCAGAGGACCTTGGTCTTCTCAGTCTCCTTGAGAACTTAGC 539
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 457 GCTTAAAGTCTTCTCCAAAGCAGAGGATCTTGGTCTTCTCAGTCTTCTTGAAAACTTAGC 516
Query 540 TGGAACATCGCCTGCGGTCTTAGCCTCGGCTGCATTACCAGCTCTCACGGCTGCTATTGT 599
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 517 TGGAACATCGCCTGCTGTCTTAGCCTCGGCTGCATTACCGGCTCTCACGGCTGCTATTGT 576
Query 600 AGCCGTGGTGTTGATCCCGGATGACTCAACTACTCTAGTGGTTGCTCAGGCGGTTTTGGC 659
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 577 CGCCTTGGTGTTGATCCCGGATGACTCAACTACTCTGGTGGTTGCTCAGGCGGTTTTGGC 636
Query 660 CGGTGCTCTTGCGCTTACAGGGGTTGTTTTGTTGGTTGGTTCTGTTGTTTTGGATGGACT 719
||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 637 CGGTGCTCTTGCGCTTACAGGCGTTGTGTTGTTGGTTGGATCTGTTGTTTTGGATGGACT 696
Query 720 TCAAGAAGCTGACTGATTCTTTCTCTGTAAACCGAACATAAAC----CCATGTCTTGTCC 775
|||||||||||||||||||||||| |||||||| |||||||| |||| | | || |
Sbjct 697 TCAAGAAGCTGACTGATTCTTTCTTTGTAAACCAAACATAAAAAAAACCAT-T-T-GTAC 753
Query 776 AATTGATTTTTGTCAGTTGCTGATT-TATAGCTGTATGGTTCAGTTGTTTATGGTTAGTC 834
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 754 AATTGATTTTTGTCAGTTGCTGATACTATAGCTGTATGGTTCAGTTGTTTATGGTTAGTC 813
Query 835 CAAGACATAAGCTGAGTGATAGAAAGAAGCTTT-ATAATAATTAAACAAATATTACAT 891
||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||
Sbjct 814 CAAGACATAAGCTGAGTGATATAAAGAAGCTTTTATAACAATTAAACAAACATTACAT 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5