BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74740.1
Length=2047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476611 jgi|Araly1|476611|fgenesh2_kg.2__1741__AT1G74740.1 3110 0.0
Ahg920833 jgi|Araly1|920833|scaffold_102114.1 1711 0.0
> Ahg476611 jgi|Araly1|476611|fgenesh2_kg.2__1741__AT1G74740.1
Length=2001
Score = 3110 bits (1684), Expect = 0.0
Identities = 1851/1930 (96%), Gaps = 17/1930 (1%)
Strand=Plus/Plus
Query 111 AAAACTTCTTTAAACTACTTTCTTCATTATTCTTCTGCTGAGTTTCAAAAACTCAGCCAT 170
|||||||||| ||| ||| ||||||||| |||||||||||| ||| |||||||||||||
Sbjct 81 AAAACTTCTTCAAATTACCCTCTTCATTA-TCTTCTGCTGAG-TTC-AAAACTCAGCCAT 137
Query 171 GGGTAATTGTATCGCCTGCGTCAAGTTTGACCCAGACAACTCAAAACCAAACCAGAAGAA 230
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 138 GGGTAATTGCATCGCCTGCGTCAAGTTTGACCCAGAAAACTCAAAACCAAACCAGAAGAA 197
Query 231 GAA-ACCTCCACGGGGACGGCAACGAAAC-CCATACGACGATCCCGATGGTTTAAGAACT 288
||| | ||||||| |||| ||| |||| | ||||| |||||||||||||||||||||
Sbjct 198 GAAGA-CTCCACGACCACGGAAACCAAACTTC-TACGAAGATCCCGATGGTTTAAGAACT 255
Query 289 CACGCACCGTTACGTGTGATTCCTATGAGCCATCAATCTCAGATCAGCGACAAGTACATC 348
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 256 CACGCACCGTTACGTGTGATCCCTATGAGCCATCAATCTCAGATCAGCGACAAGTATATC 315
Query 349 TTAGGACGAGAACTCGGTCGCGGCGAATTCGGAATCACGTATCTTTGTACAGATAGAGAG 408
| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 316 CTCGGACGAGAACTCGGTCGCGGCGAATTCGGAATCACCTATCTTTGTACAGACAGAGAG 375
Query 409 ACTCGTGAAGCTTTAGCTTGCAAATCAATCTCCAAGAGAAAGCTCCGAACCGCCGTCGAT 468
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 ACTCGTGAAGCTTTAGCTTGCAAATCAATCTCCAAGAGAAAGCTCCGAACCGCCGTCGAC 435
Query 469 GTGGAAGACGTCCGTCGTGAAGTCACGATCATGTCAACTTTACCGGAACACCCAAACGTT 528
|||||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 436 GTGGAAGACGTCCGCCGTGAAGTCACGATCATGTCAACTCTCCCGGAACATCCAAACGTT 495
Query 529 GTGAAACTTAAAGCGACTTATGAGGATAACGAGAACGTGCATCTTGTGATGGAGCTTTGT 588
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 496 GTGAAACTCAAAGCGACTTATGAGGACAACGAGAACGTGCATCTTGTGATGGAGCTTTGT 555
Query 589 GAAGGAGGTGAGCTTTTTGATCGGATTGTTGCCAGAGGACATTATACAGAGCGTGCGGCG 648
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 556 GAAGGAGGTGAGCTTTTTGATCGGATTGTTGCGAGAGGACATTATACAGAGCGTGCGGCG 615
Query 649 GCTACCGTCGCGAGAACGATCGCGGAGGTTGTGAGGATGTGTCATGTCAATGGTGTTATG 708
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 GCTACCGTCGCGAGGACGATCGCGGAGGTTGTGAGGATGTGTCATGTCAATGGTGTTATG 675
Query 709 CATAGAGATTTGAAGCCTGAGAATTTCTTGTTTGCTAACAAGAAGGAGAATTCTGCACTT 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 CATAGAGATTTGAAGCCTGAGAATTTCTTGTTTGCTAACAAGAAGGAGAATTCTGCACTT 735
Query 769 AAGGCTATTGATTTTGGTTTATCTGTTCTCTTTAAACCTGGAGAGAGGTTTACAGAGATT 828
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 736 AAGGCTATTGATTTTGGTTTATCTGTGCTCTTTAAACCTGGGGAGAGGTTTACAGAGATT 795
Query 829 GTTGGAAGTCCTTATTATATGGCTCCAGAAGTGTTGAAGAGAAATTATGGACCAGAGGTT 888
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GTAGGAAGTCCTTATTATATGGCTCCAGAAGTGTTGAAGAGAAATTATGGACCAGAGGTT 855
Query 889 GATGTGTGGAGTGCTGGAGTTATCCTCTACATCTTGCTTTGTGGTGTTCCTCCGTTT-TG 947
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 856 GATGTGTGGAGTGCTGGAGTTATCCTCTACATCTTGCTCTGTGGTGTTCCTCC-TTTCTG 914
Query 948 GGCAGAGACTGAACAAGGTGTGGCTCTTGCCATCTTGAGGGGAGTTCTTGATTTTAAGAG 1007
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 915 GGCAGAGACTGAACAAGGTGTGGCTCTTGCAATCTTGAGGGGAGTTCTTGATTTTAAGAG 974
Query 1008 AGATCCTTGGTCGCAGATATCAGAGAGCGCAAAGAGCCTTGTGAAGCAGATGTTGGAACC 1067
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 975 AGATCCTTGGTCGCAGATATCAGAGAGCGCAAAGAGCCTTGTTAAGCAGATGTTGGAACC 1034
Query 1068 TGATTCAACTAAGCGTTTGACTGCTCAGCAAGTTCTTGATCACCCTTGGATACAGAATGC 1127
|||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1035 TGATGCCACTAAGCGTTTGACTGCTCAGCAAGTTCTTGATCACCCTTGGATACAAAATGC 1094
Query 1128 AAAGAAAGCTCCAAATGTTCCTTTAGGGGATATTGTTAGGTCAAGGTTGAAGCAATTCTC 1187
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1095 TAAGAAAGCTCCAAATGTTCCTTTAGGGGATATTGTTAGGTCAAGATTGAAGCAATTCTC 1154
Query 1188 CATGATGAATAGATTGAAAAAGAAAGCTCTGCGTGTTATCGCCGAACACTTGTCTATTCA 1247
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1155 CATGATGAATAGATTGAAAAAGAAAGCTCTGCGTGTTATCGCGGAACACTTGTCTCTTCA 1214
Query 1248 AGAAGTTGAAGTGATCAGAAACATGTTTACGCTGATGGATGATGACAACGACGGTAAAAT 1307
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1215 AGAAGTTGAAGTGATCAGAAACATGTTTACACTGATGGATGATGACAACGACGGTAAAAT 1274
Query 1308 ATCATATCTAGAACTCAGAGCTGGACTCCGGAAAGTCGGTTCACAACTGGGTGAACCAGA 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 ATCATATCTAGAACTCAGAGCTGGACTCCGGAAAGTCGGTTCACAACTGGGTGAACCAGA 1334
Query 1368 GATCAAATTGTTAATGGAAGTGGCGGATGTTAATGGAAATGGATGCTTGGACTATGGAGA 1427
|||||||||||| |||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 1335 GATCAAATTGTTGATGGAAGTGGCGGATGTTAACGGAAATGGATGCCTAGACTATGGAGA 1394
Query 1428 GTTTGTAGCAGTGATAATTCACTTGCAGAAGATGGAGAATGATGAGCATTTCAGACAAGC 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 GTTTGTAGCAGTGATAATTCACTTGCAGAAGATGGAGAATGATGAGCATTTCAGACAAGC 1454
Query 1488 TTTTATGTTCTTTGACAAAGATGGAAGTGGATACATCGAATCAGAAGAACTACGTGAAGC 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 TTTTATGTTCTTTGACAAAGATGGAAGTGGATACATCGAATCAGAAGAACTACGTGAAGC 1514
Query 1548 TTTAACCGACGAGTTAGGTGAACCAGACAACAGTGTTATAATCGATATAATGCGTGAAGT 1607
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1515 TTTAACCGACGAGTTAGGTGAACCAGACAACAGCGTTATAATCGATATAATGCGTGAAGT 1574
Query 1608 CGACACTGACAAGGACGGAAAAATAAACTATGATGAGTTTGTGGTGATGATGAAAGCTGG 1667
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1575 CGACACTGACAAGGACGGACGAATAAACTACGATGAGTTTGTGGTGATGATGAAAGCTGG 1634
Query 1668 AACTGATTGGAGAAAGGCATCAAGACAATACTCAAGAGAGAGGTTTAAAAGCTTAAGCTT 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 AACTGATTGGAGAAAGGCATCAAGACAATACTCAAGAGAGAGGTTTAAAAGCTTAAGCTT 1694
Query 1728 AAACTTGATGAAAGACGGGTCAATGCATCTACACGACGCACTCACTGGACAATCTATTGC 1787
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1695 GAACTTGATGAAAGATGGGTCAATGCATCTACACGACGCACTCACTGGACAATCTATTGC 1754
Query 1788 AGTTTGATCTTTACACTTGTTTATCACCAAAACAGAAGCAATCTGATGGCTGCTTTTCTT 1847
||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||
Sbjct 1755 AGTTTGATCTTTACACTTGTTTATCACGAAAACAGAAGCAATCTGATG-CTG-TTTT-TT 1811
Query 1848 ACACGTTCATGAAGGGttttttt-ctgggcttttttcagatgtgattttggcttacttca 1906
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1812 ACACGTTCAAGAAGGGTTTTTTTTCTGGGCTTTTTTCAGATGTGATTTTGGCTTACTTCA 1871
Query 1907 ctttgtttctagagattctttttttt----GGTTTTGGGGAAGTTGGAAATTTGTAATTT 1962
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1872 CTTTGCTTCTAGAGATTCTTTTTTTTTTTTGGTTTTGGGGAAGTTGGAAATTTGTAATTT 1931
Query 1963 GTGGGCGTAGTTAGGCTTTTCACTGGAGAATGAATGAATGTGTATGTAATATTTGTTTAA 2022
|| ||||||||||||||||||| ||||| ||||||| || |||||||||| |||||||||
Sbjct 1932 GTTGGCGTAGTTAGGCTTTTCATTGGAGCATGAATGTATTTGTATGTAATGTTTGTTTAA 1991
Query 2023 TTATTATAAA 2032
|| |||||||
Sbjct 1992 TTGTTATAAA 2001
Score = 122 bits (66), Expect = 7e-27
Identities = 78/83 (94%), Gaps = 4/83 (5%)
Strand=Plus/Plus
Query 1 AATTTTACGAAAAGGTCGAAACTTTCTTCAGCTGAACCCGTG--T--TTCCTCTTCTCTG 56
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 1 AATTTTACGAAAAGGTCGAAACTTTCTTCAGCTAAACCCGTGTTTCCTTCCTCTTCTCTG 60
Query 57 CAACTCACCGGTTCGCCGGAAAA 79
|||||||||||||||||||||||
Sbjct 61 CAACTCACCGGTTCGCCGGAAAA 83
> Ahg920833 jgi|Araly1|920833|scaffold_102114.1
Length=1669
Score = 1711 bits (926), Expect = 0.0
Identities = 1331/1527 (87%), Gaps = 26/1527 (2%)
Strand=Plus/Plus
Query 303 TGTGATTCCTATGAGCCATCAATCTCAGATCAGCGACAAGTACATCTTAGGACGAGAACT 362
||| || ||||||||||||||| |||||||||||||||| ||||||||||| |||||| |
Sbjct 158 TGTAATCCCTATGAGCCATCAAACTCAGATCAGCGACAAATACATCTTAGGTCGAGAATT 217
Query 363 CGGTCGCGGCGAATTCGGAATCACGTATCTTTGTACAGATAGAGAGACTCGTGAAGCTTT 422
||||||||||||||||||||||| || || || || ||| | || || | ||||||||
Sbjct 218 AGGTCGCGGCGAATTCGGAATCACTTACCTCTGCACTGATCGTGAAACCCACGAAGCTTT 277
Query 423 AGCTTGCAAATCAATCTCCAAGA--GAAAGCTCCGAACCGCCGTCGATGTGGAAGACGTC 480
|||||||||||| || | ||| | |||| || ||||||||||||||| | ||||||||
Sbjct 278 AGCTTGCAAATCGAT-TTCAAAACGGAAA-CTTCGAACCGCCGTCGATATCGAAGACGTT 335
Query 481 CGTCGTGAAGTCACGATCATGTCAACTTTACCGGAACACCCAAACGTTGTGAAACTTAAA 540
|||||||| ||| |||| ||||| |||||||| || ||||||||||| || || |||||
Sbjct 336 CGTCGTGAGGTCGCGATTATGTCTACTTTACCTGAGCACCCAAACGTAGTTAAGCTTAAG 395
Query 541 GCGACTTATGAGGATAACGAGAACGTGCATCTTGTGATGGAGCTTTGTGAAGGAGGTGAG 600
|| | ||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 396 GCTAGTTATGAGGACAACGAGAACGTGCATCTGGTTATGGAGCTTTGTGAAGGAGGTGAG 455
Query 601 CTTTTTGATCGGATTGTTGCCAGAGGACATTATACAGAGCGTGCGGCGGCTACC-GTCGC 659
|||||||||||||||||||||||||||||||| || |||||||| || || | | || ||
Sbjct 456 CTTTTTGATCGGATTGTTGCCAGAGGACATTACACGGAGCGTGCTGCTGC-AGCTGTTGC 514
Query 660 GAGAACGATCGCGGAGGTTGTGAGGATGTGTCA-TGTCAATGGTGTTATGCATAGAGATT 718
||||||||| || |||||||||| ||||||||| | | ||||| ||||||||| ||||||
Sbjct 515 GAGAACGATTGCTGAGGTTGTGATGATGTGTCACTCT-AATGGAGTTATGCATCGAGATT 573
Query 719 TGAAGCCTGAGAATTTCTTGTTTGCTAACAAGAAGGAGAATTCTGCACTTAAGGCTATTG 778
|||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 574 TGAAACCTGAGAATTTCTTGTTTGCTAACAAGAAGGAGAATTCTCCACTAAAGGCCATTG 633
Query 779 ATTTTGGTTTATCTGT-TCTCTTTAAACCTGGAGAGAGGTTTACAGAGATTGTTGGAAGT 837
|||| || || ||||| | |||||||||||||||| | ||||||||||||||| ||||||
Sbjct 634 ATTTCGGCTTGTCTGTGT-TCTTTAAACCTGGAGATAAGTTTACAGAGATTGTAGGAAGT 692
Query 838 CCTTATTATATGGCTCCAGAAGTGTTGAAGAGAAATTATGGACCAGAGGTTGATGTGTGG 897
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 693 CCGTATTATATGGCTCCAGAAGTGTTGAAGAGAGATTATGGACCAGAGGTTGATGTGTGG 752
Query 898 AGTGCTGGAGTTATCCTCTACATCTTGCTTTGTGGTGTTCCTCCGTTTTGGGCAGAGACT 957
||||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 753 AGTGCAGGAGTTATTATCTACATCTTGCTCTGTGGTGTTCCTCCGTTTTGGGCTGAGACT 812
Query 958 GAACAAGGTGTGGCTCTTGCCATCTTGAGGGGAGTTCTTGATTTTAAGAGAGATCCTTGG 1017
||||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||
Sbjct 813 GAACAAGGTGTTGCTCTTGCGATCTTGCGGGGAGTTCTTGATTTTAAGAGAGACCCTTGG 872
Query 1018 TCGCAGATATCAGAGAGCGCAAAGAGCCTTGTGAAGCAGATGTTGGAACCTGATTCAACT 1077
| ||||||||||||||||| ||||| |||||||||||||||||||| || ||| | | |
Sbjct 873 CCTCAGATATCAGAGAGCGCCAAGAGTCTTGTGAAGCAGATGTTGGATCCGGATCCGAGT 932
Query 1078 AAGCGTTTGACTGCTCAGCAAGTTCTT-GATCACCCTTGGATACAGAATGCAAAGAAAGC 1136
| ||| || |||||||||||||| || | |||||| |||||||||||||||||||||||
Sbjct 933 ATGCGGTTAACTGCTCAGCAAGTG-TTAGCTCACCCATGGATACAGAATGCAAAGAAAGC 991
Query 1137 TCCAAATGTTCCTTTAGGGGATATTGTTAGGTCAAGGTTGAAGCAATTCTCCATGATGAA 1196
||| |||||||||||||| ||||| || || || ||||||||||| ||||| ||||||||
Sbjct 992 TCCCAATGTTCCTTTAGGAGATATAGTCAGATCGAGGTTGAAGCAGTTCTCTATGATGAA 1051
Query 1197 TAGATTGAAAAAGAAAGCTCTGCGTGTTATCGCCGAACACTTGTCTATTCAAGAAGTTGA 1256
||||| |||||||||| ||| ||||| ||||| || ||||||||||||||||| |||||
Sbjct 1052 CAGATTCAAAAAGAAAGTTCTTCGTGTAATCGCGGAGCACTTGTCTATTCAAGAGGTTGA 1111
Query 1257 AGTGATCA-GAAACATGTT-TACGCTGATGGATGATGACAACGACGGTAAAATATCATAT 1314
|||||||| ||| |||||| | | || ||||||||||| || || ||||||||| | ||
Sbjct 1112 AGTGATCAAGAA-CATGTTCT-CACTTATGGATGATGATAAGGATGGTAAAATAACTTAC 1169
Query 1315 CTAGAACTCAGAGCTGGACTCCGGAAAGTCGGTTCACAACTGGGTGAACCAGAGATCAAA 1374
| |||||||| |||||| || | ||| |||||||||||||| ||||||||||||||||||
Sbjct 1170 CCAGAACTCAAAGCTGGGCTTCAGAAGGTCGGTTCACAACTTGGTGAACCAGAGATCAAA 1229
Query 1375 TTGTTAATGGAAGTGGCGGATGTTAATGGAAATGGATG-CTTGGACTATGGAGAGTTTGT 1433
|||| ||||||||||||||||| |||||||||| | || ||| ||||||||||||||
Sbjct 1230 ATGTTGATGGAAGTGGCGGATGTCGATGGAAATGGGTTTCT-GGATTATGGAGAGTTTGT 1288
Query 1434 AGCAGTGATAATTCACTTGCAGAAGATGGAGAATGATGAGCATTTCAGACAAGCTTTTAT 1493
||| ||||||||||||||||||||||| ||||||||||| | ||||| || |||||||||
Sbjct 1289 AGCTGTGATAATTCACTTGCAGAAGATAGAGAATGATGAACTTTTCAAACTAGCTTTTAT 1348
Query 1494 GTTCTTTGACAAAGATGGAAGTGGATACATCGAA-TCAGAAGAACTACGTGAAGCTTTAA 1552
|||||| ||||||||||||||| |||||| ||| | || || ||||| |||||||||
Sbjct 1349 GTTCTTCGACAAAGATGGAAGTACATACATTGAACTT-GATGAGCTACGAGAAGCTTTAG 1407
Query 1553 CCGACGAGTTAGGTGAACCAGACAACAGTGTTATAATCGATATAATGCGTGAAGTCGACA 1612
| || |||||||| |||||||||| ||||||| ||| ||| || ||||||||||| ||||
Sbjct 1408 CTGATGAGTTAGGGGAACCAGACACCAGTGTTCTAAGCGACATTATGCGTGAAGTTGACA 1467
Query 1613 CTGACAAGGACGGAAAAATAAACTATGATGAGTTTGTGGTGATGATGAAAGCTGGAACTG 1672
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1468 CTGACAAGGACGGGCGTATAAACTATGATGAGTTTGTGGCGATGATGAAAGCTGGAACTG 1527
Query 1673 ATTGGAGAAAGGCATCAAGACAATACTCAAGAGAGAGGTTTAAAAGCTTAAGC-TTAAAC 1731
| ||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| |
Sbjct 1528 ACTGGAGAAAGGCATCAAGACAATATTCAAGAGAGAGGTTCAAAAGCTTAAGCCTTAA-C 1586
Query 1732 TTGATGAAAGACGGGTCAATGCATCTACACGACGCACTCACTGGACAATCTATTGCAGTT 1791
||||||||||| |||||| ||||||| || ||||| |||||||||||| || || | |||
Sbjct 1587 TTGATGAAAGATGGGTCATTGCATCTCCATGACGCTCTCACTGGACAAACTGTTCCTGTT 1646
Query 1792 TGATCTTTACACTTGTTTATCACCAAA 1818
| || |||| | ||| |||||||||
Sbjct 1647 TAAT-TTTATTC--GTT-ATCACCAAA 1669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76980385145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5