BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G74780.1 Length=1976 Score E Sequences producing significant alignments: (Bits) Value Ahg476614 jgi|Araly1|476614|fgenesh2_kg.2__1744__AT1G74780.1 2817 0.0 Ahg312838 jgi|Araly1|312838|fgenesh1_pm.C_scaffold_1001618 534 8e-151 > Ahg476614 jgi|Araly1|476614|fgenesh2_kg.2__1744__AT1G74780.1 Length=1892 Score = 2817 bits (1525), Expect = 0.0 Identities = 1782/1905 (94%), Gaps = 21/1905 (1%) Strand=Plus/Plus Query 67 ttttCCGGCGAGGAAGGTGGTGGTAATTGGCGGCGATGGAGATACTAAGAACGAAATGGG 126 |||||||||||||||||||||| |||||||||||||||||||| |||| || ||||||| Sbjct 1 TTTTCCGGCGAGGAAGGTGGTGATAATTGGCGGCGATGGAGATTTTAAGGACAAAATGGG 60 Query 127 TGGCTATGACAGCTAGTATATGGATACAATGCGCAAGCGGCGCTTCCTACACCTTCGGAA 186 |||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 TGGCTATGGCGGCTAGTATATGGATACAATGCACAAGCGGCGCTTCCTACACCTTCGGAA 120 Query 187 TCTATTCCGCTGTCCTAAAATCGACTCAATCGTACGATCAATCCACCCTCGATACCGTCT 246 |||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 121 TCTATTCCGCCGTCCTGAAATCGACTCAATCGTACGATCAATCCACTCTCGACACCGTCT 180 Query 247 CAGTCTTCAAGGACATCGGAGCAAACGCCGGAGTTTTCTCTGGGCTTTTATACACATACG 306 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 181 CCGTCTTCAAGGACATCGGAGCAAACGCCGGAGTTTTCTCTGGGCTTTTATACACTTACG 240 Query 307 CTACGTCCAATCGTCTCCGTGGACGGGGAGGAGGAATTGGAGGCGCTGGAGGACCTTGGG 366 |||| |||||||||| |||||||| || || | |||||||| ||||||||||||| Sbjct 241 CTACCTCCAATCGTCGCCGTGGAC-----GG-GG-A--GGAGGCGCAGGAGGACCTTGGG 291 Query 367 TGGTGCTTGCTGTTGGGGCAATTCAGTGCTTCGCCGGTTACTTTCTCATTTGGGCTTCTG 426 ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| | Sbjct 292 TGGTGCTTGCTATTGGGGCAATTCAGTGCTTCGCTGGTTATTTTCTCATTTGGGCTTCCG 351 Query 427 TTACCGGACTTATTAGAAAGCCTCCGGTGCCGCTGATGTGCCTGTTTATGTTCTTAGCAG 486 ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 352 TTACCGGACGTATTAGGAAGCCGCCGGTGCCGCTGATGTGCCTGTTTATGTTCTTAGCAG 411 Query 487 CTCAGTCGCAAACGTTCTTCAATACGGCTAATGTTGTTAGTGCCGTTGAGAATTTCGCTG 546 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 412 CTCAGTCACAAACGTTCTTTAATACGGCTAATGTTGTTAGTGCCGTTGAGAATTTCGCTG 471 Query 547 ACTATGGTGGTACAGCCGTTGGCATTATGAAGGGTTTTCTTGGTCTAAGTGGAGCGATAC 606 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 472 ACTATGGTGGTACAGCCGTTGGGATTATGAAGGGTTTTCTTGGTCTAAGTGGAGCGATAC 531 Query 607 TGATTCAACTGTACGAGACATTGTGCGCTGGAGATCCGGCCAGCTTCATTCTCTTACTGG 666 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 532 TAATTCAACTGTACGAGACATTGTGCGCTGGAGATCCGGCGAGCTTCATTCTCTTACTGG 591 Query 667 CAGTAACACCAACAGTGCTCTCACTCTTGGTCATGCCTCTGGTCAGGATCTATGAGACAA 726 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 CAGTAACTCCAACAGTGCTCTCACTCTTGGTCATGCCTCTGGTCAGGATCTATGAGACAA 651 Query 727 GCGTAGCCGATGATAAAAAGCATTTAAATGGTCTTTCAGCTGTATCTCTAATCATCGCAG 786 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 652 GCGTAGCCGATGATAAAAAGCATTTAAATGGTCTTTCAGCTGTATCTCTAATCATTGCAG 711 Query 787 CTTATCTTATGATCATTATCATATTGAAGAACACTTTTGGGTTGTCATCGTGGGCCAACA 846 |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 712 CTTATCTTATGATCGTTATCATATTGAAGAACACCTTTGGTTTGTCATCGTGGGCCAATG 771 Query 847 TTGTCACACTTGTATGTCTACTCGTCATGCTTGCCTTGCCTCTACTTATTGCGAGAAGAG 906 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | Sbjct 772 TTGTCACACTTGTATGTCTAGTCGTCCTGCTTGCCTTGCCTCTACTTATTGCGAGAAGGG 831 Query 907 CACAACGAGACGGCATGGAAAAAACAGTACCACATGATTATTCCCCTCTCATAAGCAGTC 966 ||||||||||| ||||||||||| ||| ||||||||| ||||||||||| |||||||||| Sbjct 832 CACAACGAGACAGCATGGAAAAACCAGCACCACATGAGTATTCCCCTCTGATAAGCAGTC 891 Query 967 CAAAGGCAACAACCTCCGGTAACCAAAGTTCTGAAGGTGACAGTA-AAGTGGAAGCTGGA 1025 ||||||||||||||||||||||||||||||||||||| ||||||| || | || |||| Sbjct 892 CAAAGGCAACAACCTCCGGTAACCAAAGTTCTGAAGGCGACAGTAGAA-TAGATTCTGGT 950 Query 1026 CTGAGTGAGAACCTGAATCTTCTGCAAGCTATGAAAAAACTAAGCTTCTGGTTGTTATTT 1085 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 951 CTGAGTGAGAACCTGAATCTTCTGCAAGCTATGAAAAACCTAAGCTTCTGGTTGTTGTTT 1010 Query 1086 CTTGCCATGATTTGCGGAATGGGCTCTGGACTTTCAACGATAAACAACATCCGACAAATA 1145 ||||| |||||||| |||||||| ||||||||||| |||||||||||||| || |||||| Sbjct 1011 CTTGCTATGATTTGTGGAATGGGTTCTGGACTTTCGACGATAAACAACATTCGGCAAATA 1070 Query 1146 GGTGAGTCTCTTCGATACTCATCAGTTGAGATAAATTCATTGGTCTCCTTGTGGAGTATA 1205 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1071 GGCGAGTCTCTTCGATACTCATCTGTTGAGATAAATTCATTGGTCTCCTTGTGGAGTATA 1130 Query 1206 TGGAACTTTCTCGGTAGATTTGGAGCTGGTTATGCCTCAGATGCATTGCTACACAAAAAG 1265 ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1131 TGGAACTTTCTTGGTAGATTCGGAGCTGGTTATGCCTCAGATGCATTGCTACACAAAAAA 1190 Query 1266 GGATGGCCACGTCCATTGCTAATGGCTGCAACACTTGGAACGATGA-GCATAGGCCACCT 1324 ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| || Sbjct 1191 GGATGGCCACGTCCATTGCTAATGGCTGCAACACTTGGAACAATGACG-ATAGGCCATCT 1249 Query 1325 AATCATAGCCTCTGGTTTTCAAGGAAATCTCTATGTTGGTTCTGTTATAGTTGGCGTTTG 1384 ||| |||||||||||||| |||||||| || ||||| ||||||||||||||||||||||| Sbjct 1250 AATTATAGCCTCTGGTTTCCAAGGAAACCTTTATGTCGGTTCTGTTATAGTTGGCGTTTG 1309 Query 1385 TTATGGTTCACAGTGGTCTCTGATGCCTACAATCACCTCTGAGCTGTTCGGGATTCGGCA 1444 |||||||||||| ||||||||||||||||||||||||||||| || || ||| ||||||| Sbjct 1310 TTATGGTTCACAATGGTCTCTGATGCCTACAATCACCTCTGAACTATTTGGGGTTCGGCA 1369 Query 1445 CATGGGAACCATCTTCAATACCATATCCGTGGCTAGTCCCATTGGTTCCTATATCTTCTC 1504 |||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| Sbjct 1370 CATGGGAACCATCTTCAACACCATATCTGTGGCTAGTCCCATCGGTTCCTATATCTTCTC 1429 Query 1505 TGTAAGATTGATCGGTTATATCTACGATAAGACTGCTTCCGGGGAAGGGAACACATGTTA 1564 |||||||||||| ||||||||||| || ||||||||||| |||||||||||| ||||||| Sbjct 1430 TGTAAGATTGATTGGTTATATCTATGACAAGACTGCTTCTGGGGAAGGGAACGCATGTTA 1489 Query 1565 TGGCTCTCATTGCTTCAGGCTGTCATTTATTATAATGGCATCTGTTGCGTTCTTTGGGTT 1624 ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||| Sbjct 1490 TGGCTCTCACTGCTTCAGGCTGTCATTTATTATAATGGCCTCTGTTGCATTCTTCGGGTT 1549 Query 1625 TCTTGTCGCCATTGTACTATTCTTTCGGACAAAGACGCTATATCGACAGATCCTTGTAAA 1684 |||||||||||||||||| |||||||||||||||||||| ||||| ||||| || ||||| Sbjct 1550 TCTTGTCGCCATTGTACTGTTCTTTCGGACAAAGACGCTCTATCGTCAGATTCTCGTAAA 1609 Query 1685 GAGGTTGCATCATCGATAGAGTTCTTGTGAATACTATACTTTTGGAGAAAAA-CGAATAC 1743 ||| ||||||| |||||||||||||||||||||||||||| | ||||||| ||||||| Sbjct 1610 GAGATTGCATCGCCGATAGAGTTCTTGTGAATACTATACTT--G-AGAAAAAACGAATAC 1666 Query 1744 TGCTTCTCTTGCTACATCCATGGTAGCTTATGCTTC-CAAAGGTACACATCAATTTCTTT 1802 ||||||||||||||||||||||||||||| | ||| || ||||||||||||||| |||| Sbjct 1667 CGCTTCTCTTGCTACATCCATGGTAGCTTACGATTCTCAGAGGTACACATCAATTACTTT 1726 Query 1803 ACCTATAAGTTTGATTGTAAGTTATGTTTGTATCAAATGTCTGTGTTTAGAGATGGGAAG 1862 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1727 ACCTATAAGTT-GATTGTAAGTTATGTTTGTATCAAATGTCTGTGTTTAGAGATGGGAAG 1785 Query 1863 AAAGAAAGCTGAGATCTTTGTCTCTCTTTCTTTTT-GTAGTTTCTTCCAAAAATGTGAGT 1921 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 1786 AAAGAAAGCTGAGATCTTTGTCTCTCTTTCTTTTTTGTAGTTTCTTCCACAAATGTGAGT 1845 Query 1922 TTTGTGAATTGTATAGACATCTCAAAGTT-CCCAATAATGTTGAA 1965 |||||||| ||||||||||||||| |||| ||||||||||||||| Sbjct 1846 TTTGTGAAGTGTATAGACATCTCATAGTTTCCCAATAATGTTGAA 1890 > Ahg312838 jgi|Araly1|312838|fgenesh1_pm.C_scaffold_1001618 Length=1581 Score = 534 bits (289), Expect = 8e-151 Identities = 552/677 (82%), Gaps = 26/677 (4%) Strand=Plus/Plus Query 1039 TGAATCTTCTGCAAGCTATGAAAAAACTAAG-CTTCTGGTTGTTATTTCTTGCCATGATT 1097 ||||| || | ||||||||| || | || |||||||||||| |||||||||||||| Sbjct 917 TGAATGTTTTACAAGCTATGCGTAATGT-AGACTTCTGGTTGTTGTTTCTTGCCATGATA 975 Query 1098 TGCGGAATGGGCTCTGGACTTTCAACGATAAACAACATCCGACAAATAGGTGAGTCTCTT 1157 || |||||||| |||||| |||| ||||||||||| ||| |||||||||||||||||||| Sbjct 976 TGTGGAATGGGATCTGGAATTTCGACGATAAACAATATCAGACAAATAGGTGAGTCTCTT 1035 Query 1158 CGATACTC-ATCAGTTGAGATAAATTCATTGGTCTCCTTGTGGAGTATATGGAACTTTCT 1216 |||||| | | | || |||||||| |||||| | | || |||||||||||||||||| | Sbjct 1036 CGATACACTAGC-GTCGAGATAAACTCATTGTTAGCTTTATGGAGTATATGGAACTTTAT 1094 Query 1217 CGGTAGATTTGGAGCTGGTTATGCCTCAGATGCATTGCTACACA-AAAAGGGATGGCCAC 1275 ||| | |||||||| ||||||||||| ||| ||||||||||| |||| |||||||| | Sbjct 1095 TGGTCGTTTTGGAGCCGGTTATGCCTCGGATTTATTGCTACACAGAAAA-GGATGGCCGC 1153 Query 1276 GTCCATTGCTAATGGCTGCAACACTTGGAACGATGAGCATAGGCCACCTAATCATAGCCT 1335 |||| |||||||||||| |||| |||||||| |||| |||||| || ||||||||||||| Sbjct 1154 GTCCGTTGCTAATGGCTACAACTCTTGGAACCATGACCATAGGTCATCTAATCATAGCCT 1213 Query 1336 CTGGTTTTCAAGGAAATCTCTATGTTGGTTCTG-TTATAGTTGGCGTTTGTTATGGTTCA 1394 |||| |||||||||||||| || ||||| | | || || ||| |||||||||| ||| Sbjct 1214 CTGGCTTTCAAGGAAATCTTTACCCCGGTTC-GATAATCGTAGGCATTTGTTATGGCTCA 1272 Query 1395 CAGTGGTC-TCTGATGCCTACAATCACCTCTGAGCTGTTCGGGATTCGGCACATGGGAAC 1453 || ||||| | | ||||| ||||| || || || ||||||||| || ||||||||| || Sbjct 1273 CAATGGTCGT-TAATGCCAACAATTACATCAGAACTGTTCGGGGTTAAGCACATGGGCAC 1331 Query 1454 CATCTTCAATACCATATCCG-TGGCTAGTCCCATTGGTTCCTATATCTTCTCTGTAAGAT 1512 |||| ||| ||||| | || | |||||||| || ||||| ||||||||||||||||||| Sbjct 1332 AATCTACAACACCAT-TTCGATTGCTAGTCCTATGGGTTCATATATCTTCTCTGTAAGAT 1390 Query 1513 TGATCGGTTATATCTACGATAAGACTGC-TT-CCGGGGAAGGGAACACATGTTATGGCT- 1569 | || || |||||||| ||| | || | || |||||||||| ||||| ||||| || | Sbjct 1391 TAATTGGGTATATCTATGATCATAC--CATTACCGGGGAAGGTAACACGTGTTACGG-TC 1447 Query 1570 CTCATTGCTTCAGGCTGTCATTTATTATAATGGCATCTGTTGCGTTCTTTGGGTTTCTTG 1629 ||||||| ||| | || ||||| | || || |||||||| || ||| | || ||||||| Sbjct 1448 CTCATTGTTTCCGATTGGCATTTGTGATCATTGCATCTGTGGCTTTCCTAGGATTTCTTG 1507 Query 1630 TCGCCAT-TGTACT-ATTCTTTCGGACAAAGACGCTATATCGACAGATCCTT-GTA-AAG 1685 || ||| ||| | || |||||||||||||||||||||||||||||| || | | ||| Sbjct 1508 TC-TCATGTGTGTTGGTT-TTTCGGACAAAGACGCTATATCGACAGATC-TTCG-AGAAG 1563 Query 1686 AGGTTGCATCATCGATA 1702 |||||||||| |||||| Sbjct 1564 AGGTTGCATCGTCGATA 1580 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74275977750 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5