BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74780.1
Length=1976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476614 jgi|Araly1|476614|fgenesh2_kg.2__1744__AT1G74780.1 2817 0.0
Ahg312838 jgi|Araly1|312838|fgenesh1_pm.C_scaffold_1001618 534 8e-151
> Ahg476614 jgi|Araly1|476614|fgenesh2_kg.2__1744__AT1G74780.1
Length=1892
Score = 2817 bits (1525), Expect = 0.0
Identities = 1782/1905 (94%), Gaps = 21/1905 (1%)
Strand=Plus/Plus
Query 67 ttttCCGGCGAGGAAGGTGGTGGTAATTGGCGGCGATGGAGATACTAAGAACGAAATGGG 126
|||||||||||||||||||||| |||||||||||||||||||| |||| || |||||||
Sbjct 1 TTTTCCGGCGAGGAAGGTGGTGATAATTGGCGGCGATGGAGATTTTAAGGACAAAATGGG 60
Query 127 TGGCTATGACAGCTAGTATATGGATACAATGCGCAAGCGGCGCTTCCTACACCTTCGGAA 186
|||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TGGCTATGGCGGCTAGTATATGGATACAATGCACAAGCGGCGCTTCCTACACCTTCGGAA 120
Query 187 TCTATTCCGCTGTCCTAAAATCGACTCAATCGTACGATCAATCCACCCTCGATACCGTCT 246
|||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 121 TCTATTCCGCCGTCCTGAAATCGACTCAATCGTACGATCAATCCACTCTCGACACCGTCT 180
Query 247 CAGTCTTCAAGGACATCGGAGCAAACGCCGGAGTTTTCTCTGGGCTTTTATACACATACG 306
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 CCGTCTTCAAGGACATCGGAGCAAACGCCGGAGTTTTCTCTGGGCTTTTATACACTTACG 240
Query 307 CTACGTCCAATCGTCTCCGTGGACGGGGAGGAGGAATTGGAGGCGCTGGAGGACCTTGGG 366
|||| |||||||||| |||||||| || || | |||||||| |||||||||||||
Sbjct 241 CTACCTCCAATCGTCGCCGTGGAC-----GG-GG-A--GGAGGCGCAGGAGGACCTTGGG 291
Query 367 TGGTGCTTGCTGTTGGGGCAATTCAGTGCTTCGCCGGTTACTTTCTCATTTGGGCTTCTG 426
||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 292 TGGTGCTTGCTATTGGGGCAATTCAGTGCTTCGCTGGTTATTTTCTCATTTGGGCTTCCG 351
Query 427 TTACCGGACTTATTAGAAAGCCTCCGGTGCCGCTGATGTGCCTGTTTATGTTCTTAGCAG 486
||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 352 TTACCGGACGTATTAGGAAGCCGCCGGTGCCGCTGATGTGCCTGTTTATGTTCTTAGCAG 411
Query 487 CTCAGTCGCAAACGTTCTTCAATACGGCTAATGTTGTTAGTGCCGTTGAGAATTTCGCTG 546
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 412 CTCAGTCACAAACGTTCTTTAATACGGCTAATGTTGTTAGTGCCGTTGAGAATTTCGCTG 471
Query 547 ACTATGGTGGTACAGCCGTTGGCATTATGAAGGGTTTTCTTGGTCTAAGTGGAGCGATAC 606
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 472 ACTATGGTGGTACAGCCGTTGGGATTATGAAGGGTTTTCTTGGTCTAAGTGGAGCGATAC 531
Query 607 TGATTCAACTGTACGAGACATTGTGCGCTGGAGATCCGGCCAGCTTCATTCTCTTACTGG 666
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 532 TAATTCAACTGTACGAGACATTGTGCGCTGGAGATCCGGCGAGCTTCATTCTCTTACTGG 591
Query 667 CAGTAACACCAACAGTGCTCTCACTCTTGGTCATGCCTCTGGTCAGGATCTATGAGACAA 726
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CAGTAACTCCAACAGTGCTCTCACTCTTGGTCATGCCTCTGGTCAGGATCTATGAGACAA 651
Query 727 GCGTAGCCGATGATAAAAAGCATTTAAATGGTCTTTCAGCTGTATCTCTAATCATCGCAG 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 652 GCGTAGCCGATGATAAAAAGCATTTAAATGGTCTTTCAGCTGTATCTCTAATCATTGCAG 711
Query 787 CTTATCTTATGATCATTATCATATTGAAGAACACTTTTGGGTTGTCATCGTGGGCCAACA 846
|||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 712 CTTATCTTATGATCGTTATCATATTGAAGAACACCTTTGGTTTGTCATCGTGGGCCAATG 771
Query 847 TTGTCACACTTGTATGTCTACTCGTCATGCTTGCCTTGCCTCTACTTATTGCGAGAAGAG 906
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
Sbjct 772 TTGTCACACTTGTATGTCTAGTCGTCCTGCTTGCCTTGCCTCTACTTATTGCGAGAAGGG 831
Query 907 CACAACGAGACGGCATGGAAAAAACAGTACCACATGATTATTCCCCTCTCATAAGCAGTC 966
||||||||||| ||||||||||| ||| ||||||||| ||||||||||| ||||||||||
Sbjct 832 CACAACGAGACAGCATGGAAAAACCAGCACCACATGAGTATTCCCCTCTGATAAGCAGTC 891
Query 967 CAAAGGCAACAACCTCCGGTAACCAAAGTTCTGAAGGTGACAGTA-AAGTGGAAGCTGGA 1025
||||||||||||||||||||||||||||||||||||| ||||||| || | || ||||
Sbjct 892 CAAAGGCAACAACCTCCGGTAACCAAAGTTCTGAAGGCGACAGTAGAA-TAGATTCTGGT 950
Query 1026 CTGAGTGAGAACCTGAATCTTCTGCAAGCTATGAAAAAACTAAGCTTCTGGTTGTTATTT 1085
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 951 CTGAGTGAGAACCTGAATCTTCTGCAAGCTATGAAAAACCTAAGCTTCTGGTTGTTGTTT 1010
Query 1086 CTTGCCATGATTTGCGGAATGGGCTCTGGACTTTCAACGATAAACAACATCCGACAAATA 1145
||||| |||||||| |||||||| ||||||||||| |||||||||||||| || ||||||
Sbjct 1011 CTTGCTATGATTTGTGGAATGGGTTCTGGACTTTCGACGATAAACAACATTCGGCAAATA 1070
Query 1146 GGTGAGTCTCTTCGATACTCATCAGTTGAGATAAATTCATTGGTCTCCTTGTGGAGTATA 1205
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1071 GGCGAGTCTCTTCGATACTCATCTGTTGAGATAAATTCATTGGTCTCCTTGTGGAGTATA 1130
Query 1206 TGGAACTTTCTCGGTAGATTTGGAGCTGGTTATGCCTCAGATGCATTGCTACACAAAAAG 1265
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TGGAACTTTCTTGGTAGATTCGGAGCTGGTTATGCCTCAGATGCATTGCTACACAAAAAA 1190
Query 1266 GGATGGCCACGTCCATTGCTAATGGCTGCAACACTTGGAACGATGA-GCATAGGCCACCT 1324
||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| ||
Sbjct 1191 GGATGGCCACGTCCATTGCTAATGGCTGCAACACTTGGAACAATGACG-ATAGGCCATCT 1249
Query 1325 AATCATAGCCTCTGGTTTTCAAGGAAATCTCTATGTTGGTTCTGTTATAGTTGGCGTTTG 1384
||| |||||||||||||| |||||||| || ||||| |||||||||||||||||||||||
Sbjct 1250 AATTATAGCCTCTGGTTTCCAAGGAAACCTTTATGTCGGTTCTGTTATAGTTGGCGTTTG 1309
Query 1385 TTATGGTTCACAGTGGTCTCTGATGCCTACAATCACCTCTGAGCTGTTCGGGATTCGGCA 1444
|||||||||||| ||||||||||||||||||||||||||||| || || ||| |||||||
Sbjct 1310 TTATGGTTCACAATGGTCTCTGATGCCTACAATCACCTCTGAACTATTTGGGGTTCGGCA 1369
Query 1445 CATGGGAACCATCTTCAATACCATATCCGTGGCTAGTCCCATTGGTTCCTATATCTTCTC 1504
|||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 1370 CATGGGAACCATCTTCAACACCATATCTGTGGCTAGTCCCATCGGTTCCTATATCTTCTC 1429
Query 1505 TGTAAGATTGATCGGTTATATCTACGATAAGACTGCTTCCGGGGAAGGGAACACATGTTA 1564
|||||||||||| ||||||||||| || ||||||||||| |||||||||||| |||||||
Sbjct 1430 TGTAAGATTGATTGGTTATATCTATGACAAGACTGCTTCTGGGGAAGGGAACGCATGTTA 1489
Query 1565 TGGCTCTCATTGCTTCAGGCTGTCATTTATTATAATGGCATCTGTTGCGTTCTTTGGGTT 1624
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 1490 TGGCTCTCACTGCTTCAGGCTGTCATTTATTATAATGGCCTCTGTTGCATTCTTCGGGTT 1549
Query 1625 TCTTGTCGCCATTGTACTATTCTTTCGGACAAAGACGCTATATCGACAGATCCTTGTAAA 1684
|||||||||||||||||| |||||||||||||||||||| ||||| ||||| || |||||
Sbjct 1550 TCTTGTCGCCATTGTACTGTTCTTTCGGACAAAGACGCTCTATCGTCAGATTCTCGTAAA 1609
Query 1685 GAGGTTGCATCATCGATAGAGTTCTTGTGAATACTATACTTTTGGAGAAAAA-CGAATAC 1743
||| ||||||| |||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct 1610 GAGATTGCATCGCCGATAGAGTTCTTGTGAATACTATACTT--G-AGAAAAAACGAATAC 1666
Query 1744 TGCTTCTCTTGCTACATCCATGGTAGCTTATGCTTC-CAAAGGTACACATCAATTTCTTT 1802
||||||||||||||||||||||||||||| | ||| || ||||||||||||||| ||||
Sbjct 1667 CGCTTCTCTTGCTACATCCATGGTAGCTTACGATTCTCAGAGGTACACATCAATTACTTT 1726
Query 1803 ACCTATAAGTTTGATTGTAAGTTATGTTTGTATCAAATGTCTGTGTTTAGAGATGGGAAG 1862
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 ACCTATAAGTT-GATTGTAAGTTATGTTTGTATCAAATGTCTGTGTTTAGAGATGGGAAG 1785
Query 1863 AAAGAAAGCTGAGATCTTTGTCTCTCTTTCTTTTT-GTAGTTTCTTCCAAAAATGTGAGT 1921
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1786 AAAGAAAGCTGAGATCTTTGTCTCTCTTTCTTTTTTGTAGTTTCTTCCACAAATGTGAGT 1845
Query 1922 TTTGTGAATTGTATAGACATCTCAAAGTT-CCCAATAATGTTGAA 1965
|||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 1846 TTTGTGAAGTGTATAGACATCTCATAGTTTCCCAATAATGTTGAA 1890
> Ahg312838 jgi|Araly1|312838|fgenesh1_pm.C_scaffold_1001618
Length=1581
Score = 534 bits (289), Expect = 8e-151
Identities = 552/677 (82%), Gaps = 26/677 (4%)
Strand=Plus/Plus
Query 1039 TGAATCTTCTGCAAGCTATGAAAAAACTAAG-CTTCTGGTTGTTATTTCTTGCCATGATT 1097
||||| || | ||||||||| || | || |||||||||||| ||||||||||||||
Sbjct 917 TGAATGTTTTACAAGCTATGCGTAATGT-AGACTTCTGGTTGTTGTTTCTTGCCATGATA 975
Query 1098 TGCGGAATGGGCTCTGGACTTTCAACGATAAACAACATCCGACAAATAGGTGAGTCTCTT 1157
|| |||||||| |||||| |||| ||||||||||| ||| ||||||||||||||||||||
Sbjct 976 TGTGGAATGGGATCTGGAATTTCGACGATAAACAATATCAGACAAATAGGTGAGTCTCTT 1035
Query 1158 CGATACTC-ATCAGTTGAGATAAATTCATTGGTCTCCTTGTGGAGTATATGGAACTTTCT 1216
|||||| | | | || |||||||| |||||| | | || |||||||||||||||||| |
Sbjct 1036 CGATACACTAGC-GTCGAGATAAACTCATTGTTAGCTTTATGGAGTATATGGAACTTTAT 1094
Query 1217 CGGTAGATTTGGAGCTGGTTATGCCTCAGATGCATTGCTACACA-AAAAGGGATGGCCAC 1275
||| | |||||||| ||||||||||| ||| ||||||||||| |||| |||||||| |
Sbjct 1095 TGGTCGTTTTGGAGCCGGTTATGCCTCGGATTTATTGCTACACAGAAAA-GGATGGCCGC 1153
Query 1276 GTCCATTGCTAATGGCTGCAACACTTGGAACGATGAGCATAGGCCACCTAATCATAGCCT 1335
|||| |||||||||||| |||| |||||||| |||| |||||| || |||||||||||||
Sbjct 1154 GTCCGTTGCTAATGGCTACAACTCTTGGAACCATGACCATAGGTCATCTAATCATAGCCT 1213
Query 1336 CTGGTTTTCAAGGAAATCTCTATGTTGGTTCTG-TTATAGTTGGCGTTTGTTATGGTTCA 1394
|||| |||||||||||||| || ||||| | | || || ||| |||||||||| |||
Sbjct 1214 CTGGCTTTCAAGGAAATCTTTACCCCGGTTC-GATAATCGTAGGCATTTGTTATGGCTCA 1272
Query 1395 CAGTGGTC-TCTGATGCCTACAATCACCTCTGAGCTGTTCGGGATTCGGCACATGGGAAC 1453
|| ||||| | | ||||| ||||| || || || ||||||||| || ||||||||| ||
Sbjct 1273 CAATGGTCGT-TAATGCCAACAATTACATCAGAACTGTTCGGGGTTAAGCACATGGGCAC 1331
Query 1454 CATCTTCAATACCATATCCG-TGGCTAGTCCCATTGGTTCCTATATCTTCTCTGTAAGAT 1512
|||| ||| ||||| | || | |||||||| || ||||| |||||||||||||||||||
Sbjct 1332 AATCTACAACACCAT-TTCGATTGCTAGTCCTATGGGTTCATATATCTTCTCTGTAAGAT 1390
Query 1513 TGATCGGTTATATCTACGATAAGACTGC-TT-CCGGGGAAGGGAACACATGTTATGGCT- 1569
| || || |||||||| ||| | || | || |||||||||| ||||| ||||| || |
Sbjct 1391 TAATTGGGTATATCTATGATCATAC--CATTACCGGGGAAGGTAACACGTGTTACGG-TC 1447
Query 1570 CTCATTGCTTCAGGCTGTCATTTATTATAATGGCATCTGTTGCGTTCTTTGGGTTTCTTG 1629
||||||| ||| | || ||||| | || || |||||||| || ||| | || |||||||
Sbjct 1448 CTCATTGTTTCCGATTGGCATTTGTGATCATTGCATCTGTGGCTTTCCTAGGATTTCTTG 1507
Query 1630 TCGCCAT-TGTACT-ATTCTTTCGGACAAAGACGCTATATCGACAGATCCTT-GTA-AAG 1685
|| ||| ||| | || |||||||||||||||||||||||||||||| || | | |||
Sbjct 1508 TC-TCATGTGTGTTGGTT-TTTCGGACAAAGACGCTATATCGACAGATC-TTCG-AGAAG 1563
Query 1686 AGGTTGCATCATCGATA 1702
|||||||||| ||||||
Sbjct 1564 AGGTTGCATCGTCGATA 1580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74275977750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5