BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74800.1
Length=2391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926858 jgi|Araly1|926858|scaffold_202419.1 3384 0.0
Ahg496442 jgi|Araly1|496442|fgenesh2_kg.8__2258__AT5G62620.1 686 0.0
> Ahg926858 jgi|Araly1|926858|scaffold_202419.1
Length=2053
Score = 3384 bits (1832), Expect = 0.0
Identities = 1983/2055 (96%), Gaps = 13/2055 (1%)
Strand=Plus/Plus
Query 108 aaaaaaacagaaatgaaaaaacccaaattgtcgaaagtggaaaaaaTCGACAAGATTGAT 167
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||
Sbjct 9 AAAAAAACAGAAATGAAAAAACCCAAATTGTCGAAAGTTGAAAAACTCGACAAGCTTGAT 68
Query 168 CTGTTCTCTTCACTATGGAAGCAGAGATCGGTTCGTGTAATAATGGCAATAGGGTTTCTC 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 CTGTTCTCTTCACTATGGAAGCAGAGATCGGTTCGTGTAATAATGGCAATAGGGTTTCTC 128
Query 228 TATCTTG-TAATTGTCTCAGTAGAGATACCTCTCGTTTTCAAATCCTGGTCCAGCAGCTC 286
|||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 129 TATC-TGATAATTGTCTCAGTAGAGATACCTCTCGTATTCAAATCCTGGTCCAGCAGCTC 187
Query 287 CGTGCCTCTTGATGCTCTTTCTCGACTCGAGAAGCTCAATAACGAGCAAGAGCCCCAAGT 346
||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 188 CGTGCCTCTTGATTCTCTTTCCCGACTCGAGAAGCTCAATAGCGAGCAAGAGCCCCAAGT 247
Query 347 CGAGATTATCCCTAATCCTCCATTGGAGCCAGTTTCGTACCCGGTTTC-GAACCCGACCA 405
||||| |||||| ||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 248 CGAGAAAATCCCTGATCCTCCATTGAAGCCAGTTTCGTACCCGGTTTCTG-ACCCGACCA 306
Query 406 TTGTTACCCGGACGGACCTTGTTCAGAACAAGGTCCGTGAACATCATCGGGGTGTTCTCT 465
|||||| ||||||||| | |||||||||||||||||||||||||||||| | ||||
Sbjct 307 TTGTTAACCGGACGGA-C-----CAGAACAAGGTCCGTGAACATCATCGGGGTCTCCTCT 360
Query 466 CAAGTTTGAGATTTGATTCGGAAACTTTCGACCCGAGTAGTAAAGACGGGTCAGTGGAGC 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAAGTTTGAGATTTGATTCGGAAACTTTCGACCCGAGTAGTAAAGACGGGTCAGTGGAGC 420
Query 526 TTCACAAGTCAGCTAAGGAAGCTTGGCAGCTAGGTCGCAAGCTATGGAAGGAGCTTGAAT 585
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCACAAGTCGGCTAAGGAAGCTTGGCAGCTAGGTCGCAAGCTATGGAAGGAGCTTGAAT 480
Query 586 CTGGAAGGCTTGAGAAACTAGTGGAGAAGCCAGAGAAGAACAAACCGGATTCATGTCCAC 645
| |||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 481 CAGGAAGGCTTGAGAAACTAGTGGAGAAGCCAGAGAAGAACAAATCAGATTCGTGTCCAC 540
Query 646 ATTCTGTTTCGCTAACCGGGTCTGAGTTTATGAACCGGGAGAACAAATTGATGGAGCTGC 705
||||||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||
Sbjct 541 ATTCTGTTTCGTTAACCGGGTCGGAATTTATGAACCGGGAGAACAAACTGATGGAGCTGC 600
Query 706 CGTGTGGTTTGACATTGGGTTCACACATAACTTTGGTGGGGAGGCCGAGGAAAGCTCATC 765
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 CGTGTGGTTTGACATTGGGTTCACACATAACTCTGGTGGGGAGGCCGAGGAAAGCTCATC 660
Query 766 CCAAGGAAGGAGATTGGTCTAAGTTGGTGTCTCAGTTTGTGATAGAGCTTCAAGGTTTGA 825
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 661 CCAAGGAAGGAGATTGGTCTAAGTTAGTGTCTCAGTTTGTGATAGAGCTTCAAGGTTTGA 720
Query 826 AGACTGTTGAAGGAGAGGATCCTCCTAGGATTCTGCATTTCAATCCGAGGCTTAAGGGAG 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGACTGTTGAAGGAGAGGATCCTCCTAGGATTCTGCATTTCAATCCGAGGCTTAAGGGAG 780
Query 886 ATTGGAGCAAAAAACCGGTGATTGAGCAGAATAGTTGCTATAGGATGCAATGGGGACCTG 945
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 781 ATTGGAGCAAAAAACCGGTGATTGAGCAGAACAGTTGCTATAGGATGCAATGGGGACCTG 840
Query 946 CACAACGTTGCGAAGGATGGAAGTCAAGAGATGATGAAGAGACTGTTGATAGTCATGTGA 1005
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 841 CACAACGTTGCGAAGGATGGAAGTCAAGAGCCGAGGAAGAGACTGTTGATAGTCATGTGA 900
Query 1006 AGTGTGAAAAATGGATTCGTGATGATGACAATTACTCAGAAGGGTCGAGGGCAAGATGGT 1065
||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 901 AGTGTGAGAAGTGGATTCGTGATGATGATAACTACTCAGAAGGGTCGAGGGCAAGATGGT 960
Query 1066 GGTTGAATAGACTTATAGGAAGGAGGAAAAGGGTCAAAGTAGAATGGCCGTTTCCTTTTG 1125
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 961 GGTTGAATAGACTCATAGGAAGGAGAAAAAGGGTCAAAGTGGAATGGCCGTTTCCTTTTG 1020
Query 1126 TGGAAGAGAAGCTGTTCGTTCTAACTCTTAGCGCCGGTTTAGAGGGTTACCATATCAATG 1185
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1021 TGGAAGAGAAGCTGTTTGTTCTAACTCTTAGCGCCGGTTTAGAGGGCTACCATATCAATG 1080
Query 1186 TTGATGGAAAGCATGTTACTTCTTTCCCTTATCGCACTGGTTTCACCCTTGAGGATGCAA 1245
|||||||||||||||| || |||||||||||||||||||||||||| || ||||||||||
Sbjct 1081 TTGATGGAAAGCATGTGACATCTTTCCCTTATCGCACTGGTTTCACGCTCGAGGATGCAA 1140
Query 1246 CAGGGCTAACAGTAAACGGAGACATTGATGTCCATTCTGTTTTTGTTGCCTCTCTGCCAA 1305
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CAGGGCTAACCGTAAATGGAGACATTGATGTCCATTCTGTTTTTGTTGCCTCTCTGCCAA 1200
Query 1306 CATCACATCCTAGTTTTGCTCCCCAAAGGCATCTCGAATTGTCAAAGAGATGGCAGGCTC 1365
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1201 CATCACATCCTAGCTTTGCTCCCCAAAGGCATCTCGAGTTGTCAAAGAGATGGCAGGCCC 1260
Query 1366 CTGTAGTTCCCGATGGGCCTGTGGAGATCTTTATAGGCATTCTTTCCGCAGGCAATCATT 1425
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1261 CTGTAGTTCCTGATGGGCCTGTGGAGATCTTTATAGGCATTCTTTCTGCAGGCAATCATT 1320
Query 1426 TCTCTGAGCGGATGGCTGTGAGGAAATCCTGGATGCAGCATGTTCTTATTACATCTGCAA 1485
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1321 TCTCTGAGCGGATGGCTGTGAGGAAATCCTGGATGCAGCATGTTCTTATCACATCTGCAA 1380
Query 1486 AAGTTGTTGCTCGTTTCTTTGTGGCGCTGCATGGGAGGAAGGAGGTGAATGTGGAATTGA 1545
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1381 AAGTTGTTGCTCGTTTCTTTGTAGCGCTGCATGGGAGGAAGGAGGTGAATGTGGAATTGA 1440
Query 1546 AGAAAGAAGCGGAGTATTTTGGGGACATTGTACTTGTTCCTTACATGGATAGCTATGATC 1605
|||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1441 AGAAAGAAGCAGAGTATTTTGGAGACATTGTACTTGTTCCATACATGGATAGCTATGATC 1500
Query 1606 TTGTCGTGCTGAAAACTGTTGCCATATGTGAACACGGAGCTCTTGCATTCTCTGCAAAGT 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TTGTCGTGCTGAAAACTGTTGCCATATGTGAACACGGAGCTCTTGCATTCTCTGCAAAGT 1560
Query 1666 ACATAATGAAGTGTGACGATGATACATTTGTAAAACTTGGCGCGGTGATCAATGAAGTGA 1725
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1561 ACATAATGAAATGTGACGATGATACATTTGTAAAACTTGGTGCGGTGATCAATGAAGTGA 1620
Query 1726 AAAAAGTACCCGAAGGTAGAAGCCTGTACATTGGTAACATGAATTATTACCACAAACCTC 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 AAAAAGTACCCGAAGGTAGAAGCCTGTACATTGGTAACATGAATTATTACCACAAACCTC 1680
Query 1786 TCCGTGGGGGTAAATGGGCAGTCACATATGAGGAATGGCCAGAGGAGGACTATCCGCCCT 1845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 TCCGTGGGGGTAAATGGGCAGTCACATATGAGGAATGGCCAGAGGAGGACTATCCGCCCT 1740
Query 1846 ACGCAAATGGACCCGGATATGTTCTATCTTCTGACATTGCGCGCTTCATCGTGGACAAGT 1905
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1741 ACGCAAATGGACCCGGATATGTTCTATCTTCTGACATTGCGCGCTTCATCGTAGACAAGT 1800
Query 1906 TTGAGAGACATAAATTACGGCTGTTCAAGATGGAGGACGTGAGTGTGGGAATGTGGGTTG 1965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 TTGAGAGACATAAATTACGGCTGTTCAAGATGGAGGACGTGAGTGTGGGAATGTGGGTTG 1860
Query 1966 AGCATTTCAAGAACACAACAAACCCAGTGGATTACAGACACAGTCTGAGATTCTGCCAGT 2025
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1861 AGCATTTCAAGAACACAACAAACCCAGTGGATTACAGACACAGTCTGAGATTCTGCCAAT 1920
Query 2026 TTGGTTGTGTTGAGAACTACTACACAGCTCATTACCAGTCGCCAAGACAGATGATATGCT 2085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 TTGGTTGTGTTGAGAACTACTACACAGCTCATTACCAGTCGCCAAGACAGATGATATGCT 1980
Query 2086 TATGGGATAAGCTCTTAAGACAGAACAAGCCTGAGTGTTGTAACATGAGATGATGATACT 2145
||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1981 TATGGGATAAGCTTTTAAGACAGAACAAGCCTGAGTGTTGTAACATGAGATGAT-A--CT 2037
Query 2146 TGAGGAAACAGTTGC 2160
|||||||||||||||
Sbjct 2038 TGAGGAAACAGTTGC 2052
> Ahg496442 jgi|Araly1|496442|fgenesh2_kg.8__2258__AT5G62620.1
Length=2534
Score = 686 bits (371), Expect = 0.0
Identities = 1062/1389 (76%), Gaps = 73/1389 (5%)
Strand=Plus/Plus
Query 791 GGTGTCTCAGTTTGTGATAGAGCTTCAAGGTTTG-AAGACTGTTGAAGGAGAGGATCCTC 849
||| || |||||| | | |||||||| |||||| ||| | ||||||||||| || || |
Sbjct 1000 GGTTTCACAGTTTAAGTTGGAGCTTCAGGGTTTGAAAG-CAGTTGAAGGAGAAGAGCCAC 1058
Query 850 CTAGGATTCTGCATTTCAATCCGAGGCTTAAGGGAGATTGGAGCAAAAAACCGGTGATTG 909
|| |||| || || |||||||| ||||||||||| |||||||| || || || ||||
Sbjct 1059 CTCGGATACTCCACTTCAATCCAAGGCTTAAGGGTGATTGGAGTGGTAAGCCTGTCATTG 1118
Query 910 AGCAGAATAGTTGCTATAGGATGCAATGGGGAC-CTGCACAACGTTGCGAAGGATGGAAG 968
||||||| | ||| ||||| ||||||||||| | | |||||| | || ||||||||| ||
Sbjct 1119 AGCAGAACACTTGTTATAGAATGCAATGGGG-CTCAGCACAAAGATGTGAAGGATGG-AG 1176
Query 969 -TCAAGAGATGATGAAGAGACTGTTGATAGTCATGTGAAGTGTGAAAAATGGATTCGTGA 1027
|| || ||||||||||||||||||||| |||| || ||||| || |||||| ||| ||
Sbjct 1177 ATCTAGGGATGATGAAGAGACTGTTGATGGTCAGGTTAAGTGCGAGAAATGGGCTCGAGA 1236
Query 1028 TGATGA-CAATTAC-TC---AGAAGGGTC--G--A-G-GGCAAGATGGTGG-TTGAATAG 1075
|||| | | ||||| || ||||| ||| | | | ||| ||||||| || | | |
Sbjct 1237 TGAT-AGC-ATTACATCTAAAGAAGAGTCTAGCAAGGCGGCTTCATGGTGGCTT-AGTCG 1293
Query 1076 ACTT-ATAGGAAGGAGGAA-AAGGGTCAA-AGTAGAATGGCCGTTTCCTTTTGTGGAAGA 1132
| || ||||| |||| || || || || || |||||||| ||||| || | ||
Sbjct 1294 A-TTAATAGGTCGGAGCAAGAA-AGT-AACTGTTGAATGGCCATTTCCATTCACAGTTGA 1350
Query 1133 GAAGCTGTTCGTTCTAACTCTTAGCGCCGGTTTAGAGGGTTACCATATCAATGTTGATGG 1192
||||| ||||| || || ||||| || || || || ||||| ||| | | ||| |||||
Sbjct 1351 CAAGCTTTTCGTGCTTACACTTAGTGCTGGATTGGAAGGTTATCATGTTAGTGTCGATGG 1410
Query 1193 AAAGCATGTTAC-TTCTTTCCCTTATCGCACTGG-TTTCACCCTTGAGGATGCAACAGGG 1250
||||| ||||| | |||| || || || ||||| ||| || ||||||||||| || ||
Sbjct 1411 GAAGCACGTTACATCCTTT-CCATACCGAACTGGATTT-ACGCTTGAGGATGCTACTGGT 1468
Query 1251 CTAA-CAGTAAACGGAGACATTGATGTCCATTCTGTTTTTGTTGCCTCTCTGCCAACATC 1309
|||| || | ||||| ||||| ||||| || || ||||| | || |||||| ||||| ||
Sbjct 1469 CTAACCA-TTAACGGGGACATAGATGTTCACTCGGTTTTCGCTGGCTCTCTCCCAACCTC 1527
Query 1310 ACATCCTAGTTTTGCTCCCCAAAGGCATCTCGAATTGTCAAAG-AGA-TGGCAGGCTCCT 1367
||||||||||||||||| || |||||||| || | || || | | ||||| || ||
Sbjct 1528 GCATCCTAGTTTTGCTCCTCAGAGGCATCTTGAGCTCTC-GAGCA-ATTGGCAAGC-CCC 1584
Query 1368 GT-AGTTCCCGATGGGCCTGTGGAGATCTTTATAGGCATTCTTTCCGCAGGCAATCATTT 1426
| | |||| |||| || || || || || || || || ||||| || || || |||||
Sbjct 1585 ATCACTTCCTGATGAGCAAGTTGATATGTTCATTGGTATCCTTTCTGCTGGTAACCATTT 1644
Query 1427 CT-CTGAGCGGATGGCTGTGAGGAAATCCTGGATGCAGCATGTTCTTATTACATCTGCAA 1485
| ||||||||||||||||||||| || |||||||| ||| || ||| |||| | |
Sbjct 1645 -TGCTGAGCGGATGGCTGTGAGGAGGTCGTGGATGCAACATAAACTCGTTAAATCTTCCA 1703
Query 1486 AAGTTGTTGCTCGTTTCTTTGTGGCGCTGCA-TGGGAGGAAGGAGGTGAATGTGGAATTG 1544
||||||| ||||| |||||||| || ||||| | |||||| || || |||||||| |
Sbjct 1704 AAGTTGTCGCTCGGTTCTTTGTTGCACTGCACT-CGAGGAAAGAAGTAAATGTGGAGCTA 1762
Query 1545 AAGAAAGAAGCGGAGTAT-TTTGGGGACATTG-TACTTGTTCCTTACATGGATAGCTATG 1602
||||| ||||| || | | ||||| ||||| | || | || ||||||||||| || ||||
Sbjct 1763 AAGAAGGAAGCTGAAT-TCTTTGGAGACATAGTTA-TAGTCCCTTACATGGACAGTTATG 1820
Query 1603 ATCTTGTCGTGCTGAAAACTGTTGCCATATGTGAACACGGAGCTCTTGC-A-TTCTCTGC 1660
| |||||||| || ||||||||||| || || || |||| |||| | | | || ||||
Sbjct 1821 ACCTTGTCGTCCTCAAAACTGTTGCAATTTGCGAGTACGGGGCTCAT-CAACTT-GCTGC 1878
Query 1661 -AAAGTACATAATGAAGTGTGACGATGATACATTTGTAAAACTTGG-CGCGGTGATCAAT 1718
||| | ||| ||||||||||| ||||||||||||||| || ||| ||||| | | |
Sbjct 1879 TAAA-TTCATCATGAAGTGTGATGATGATACATTTGTACAA-GTGGATGCGGTTCTTAGT 1936
Query 1719 GAAGTGAA-AAAAGTACCCGAAGGTAGAAGCCTGTACATTGGTAACATGAATTATTACCA 1777
|||| ||| | || ||| | | |||||| || |||||||| ||||| |||||||| ||
Sbjct 1937 GAAGCGAAGAGAA-CACCTGCCGATAGAAGTCTATACATTGGCAACATCAATTATTATCA 1995
Query 1778 CAAACCTCTCCGTGGGGGTAAATGGGCAGTCACATATGAGGAATGGCCAGAGGAGGACTA 1837
|||||| ||||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1996 CAAACCGCTCCGCCAGGGTAAATGGGCTGTTACATATGAGGAATGGCCAGAGGAGGACTA 2055
Query 1838 TCCGCCCTACGCAAATGGACCC-GGATATGT-TCTATCTT-CTGACAT-TGCGCGCTTCA 1893
||| || ||||| ||||| ||| ||||| | | |||| | || || | | ||||| |
Sbjct 2056 TCCACCTTACGCTAATGG-CCCTGGATACATAT-TATCAAAC-GATATCT-CTCGCTTTA 2111
Query 1894 TCGTGGACA-AGTTTGAGAGACATAAATTACGGCTGTTCAAGATGGAGGACGTGAGTGTG 1952
||||| | | ||||||||| ||| |||||| || ||||||| ||||| || || |||||
Sbjct 2112 TCGTGAA-AGAGTTTGAGAAACACAAATTAAGGATGTTCAAAATGGAAGATGTAAGTGTA 2170
Query 1953 GGAATGTGGGTTGAGCATTTCAAGAACACAACAAACCCAGTGGATTACAGACACAGTCTG 2012
||||||||||| || || ||||| ||| ||||| || || || |||| || || ||
Sbjct 2171 GGAATGTGGGTAGAACAATTCAACAACGGTACAAAGCCGGTAGACTACATTCATAGCCTC 2230
Query 2013 A-GATTCTGCCAGTTTGGTTGTGTTGAGAACTACTACACAGCTCATTACCAGTCGCCAAG 2071
| | || || ||||||||||| | ||||| |||| || || ||||| |||||||| ||
Sbjct 2231 AAGTTT-TGTCAGTTTGGTTGCATAGAGAATTACTTGACGGCGCATTATCAGTCGCCGAG 2289
Query 2072 ACAGATGATATGCTTATGGGATAAGCTC-T-TAAGACAGAACAAGCCTGAGTGTTGTAAC 2129
||||||||| ||||| ||||||||| | | | ||||| ||| ||| |||| || |||
Sbjct 2290 ACAGATGATTTGCTTGTGGGATAAGTTGGTGTT-GACAGG-CAAACCTCAGTGCTGCAAC 2347
Query 2130 ATGAGATGA 2138
|||||||||
Sbjct 2348 ATGAGATGA 2356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90083429425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5