BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74810.1
Length=2052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334832 jgi|Araly1|334832|fgenesh1_pg.C_scaffold_1001397 2322 0.0
Ahg316416 jgi|Araly1|316416|fgenesh1_pm.C_scaffold_2001449 1768 0.0
> Ahg334832 jgi|Araly1|334832|fgenesh1_pg.C_scaffold_1001397
Length=2052
Score = 2322 bits (1257), Expect = 0.0
Identities = 1806/2071 (87%), Gaps = 38/2071 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGAAAGAGTGGA-AGGCTCGAAAAGGCCATTTCA-AGGTATCATAAG-AGAT 57
||||||||||||||| |||| | ||||||| |||| |||| | ||||||| | || ||||
Sbjct 1 ATGGAGGAAGAAAGACTGGATA-GCTCGAAGAGGCTATTT-AGAGGTATCGT-AGCAGAT 57
Query 58 GTCAAAGGAAGAGCCTTGTGTTACAAGCAAGACTGGATCGCTGGTCTACGTTCTGGTTTC 117
| | |||||||||||||||||||||| |||||||| |||||||||| ||||||||||||
Sbjct 58 CTTAGAGGAAGAGCCTTGTGTTACAAGGAAGACTGGGTCGCTGGTCTCCGTTCTGGTTTC 117
Query 118 GGGATTTTAGCACCGACAACATATGTTTTCTTCGCCTCTGCGCTTCCTGTTATTGCCTTT 177
||||||||||| || ||||||||| |||| ||||| ||||||||||| ||||| ||||||
Sbjct 118 GGGATTTTAGCTCCCACAACATATATTTTTTTCGCTTCTGCGCTTCCGGTTATCGCCTTT 177
Query 178 GGCGAGCAACTTAGCCACGACACAGAGAGATCGTTGAGCACAGTGGAAACGTTAGCATCA 237
||||||||||| |||| |||||||||| || ||||||||||||| |||||||||||||||
Sbjct 178 GGCGAGCAACTCAGCCGCGACACAGAGGGAGCGTTGAGCACAGTAGAAACGTTAGCATCA 237
Query 238 ACAGCGTTATGTGGAGTGATACACTCG-TTATTGGGAGGACAACCATTGTTGATACTTGG 296
|||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 238 ACAGCGTTATGTGGAGTGATACACTCAATT-TTGGGAGGGCAACCATTGTTGATACTTGG 296
Query 297 AGTTGCAGAACCAACTGTCTTAATGTACAAATACTTGTACGACTTCGCTAAAGGAAGACC 356
|||||||||||||||||| ||||||||| ||||||||| ||||||||| |||||||||
Sbjct 297 AGTTGCAGAACCAACTGTGTTAATGTACGTTTACTTGTACAACTTCGCTATAGGAAGACC 356
Query 357 TGAATTGGGCAAACAACTCTACTTAGCTTGGGTTGCTTGGGTTTGTGTGTGGACGGCTTT 416
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 357 AGAATTGGGCAAACAACTCTACTTAGCTTGGGCTGCTTGGGTTTGTGTGTGGACGGCTCT 416
Query 417 GTTACTATTCCTAATGGCGATA-TTCAACATGGCTTATATCATCAACCGGTTCACGAGGA 475
|||||| ||||| |||||||| || || |||| ||||||| |||||||| ||||||
Sbjct 417 GTTACTGTTCCTTATGGCGATCCTT-AATGCGGCTGATATCATTAACCGGTTTACGAGGG 475
Query 476 TCGCTGGTGAGCTGTTTGGTATGTTGATCGCTGTTCTATTTC-TCCAACAAACCATAAAG 534
| |||||||||||||| ||||||||||| | ||||| || | |||||||| |||| |||
Sbjct 476 TTGCTGGTGAGCTGTTCGGTATGTTGATATCCGTTCTGTT-CATCCAACAAGCCATTAAG 534
Query 535 GGAATGGTGAGTGAATTTAGGATTCCAAAAGGTGAAGACTCAAAACTTGAAAAGTATCAG 594
|| ||||||||||||||| |||| ||||||| ||| ||||||||||| ||||||||| ||
Sbjct 535 GGTATGGTGAGTGAATTTGGGATGCCAAAAGATGAGGACTCAAAACTAGAAAAGTAT-AG 593
Query 595 -TTTGAGTGGCTCTACACAAACGGACTTCTTGGCCTTATTTTCACAGTCGGTCTTGTCTA 653
|||||||||||||| |||||||||||||| ||||| |||||||| | || ||| ||||
Sbjct 594 GTTTGAGTGGCTCTATACAAACGGACTTCTCGGCCTCATTTTCACCTTTGGCCTTCTCTA 653
Query 654 CACCGCTTTGAAGAG-CAGAAAAGCAAGGTCTTGGCCATACGGAACAGGATGTTGCCGAA 712
||||||||||||||| | |||||||||||||||||| ||||||||||||||| | | |||
Sbjct 654 CACCGCTTTGAAGAGTC-GAAAAGCAAGGTCTTGGCGATACGGAACAGGATGGTACAGAA 712
Query 713 GCTTCGTTGCAGACTACGGAGTTCCGTTGATGGTTGTGGTTTGGACAGCATTGTCTTTCA 772
||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 713 GCTTCATTGCAGACTATGGAGTTCCTTTGATGGTTGTGGTTTGGACAGCATTGTCTTTTA 772
Query 773 GTACGCCATCAAAACTACCCTCTGGTGTCCCGAGAAGACTCGTTAGTCCTCTTCCATGGG 832
|||||||||||||||| |||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 773 GTACGCCATCAAAACTCCCCTCTGGTGTCCCAAGAAGACTCTTTAGTCCTCTGCCATGGG 832
Query 833 ACTCTGTTTCTTTAACACATTGGACTGTCATCAAGGACATGGGTAAAGTCTCTCCCGGTT 892
|||||| ||||||| |||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 833 ACTCTGCTTCTTTATCACATTGGACTGTCATCAAGGACATGGGGGAAGTCTCTCCGGGTT 892
Query 893 ACATATTTGCAGCGTTTATACCCGCATTGATGATCGCAGGCCTCTACTTCTTTGACCACA 952
||||||| || || |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 893 ACATATTCGCGGCATTTATACCCGCATTGATGATAGCAGGGCTCTACTTCTTTGACCACA 952
Query 953 GCGTTGTCTCGCAGCTCGCGCAGCAGAAGGAGTTTAACCTCAAGAACCCTTCTGCATATC 1012
|||||| |||||||||||| || ||||||||||| ||||||||||| ||||| || ||||
Sbjct 953 GCGTTGCCTCGCAGCTCGCTCAACAGAAGGAGTTCAACCTCAAGAAGCCTTCGGCGTATC 1012
Query 1013 ACTACGACATTCTCTTGTTAGGTTTCATGGTATTGATCTGTGGAATGCTCGGTCTACCGC 1072
|||| ||||||||| |||| ||||||||| |||||||||||| |||||||||| || |
Sbjct 1013 ACTATGACATTCTCCTGTTGGGTTTCATGACGTTGATCTGTGGATTGCTCGGTCTGCCTC 1072
Query 1073 CTTCCAACGGAGTCCTCCCGCAGTCTCCTATGCATACCAAAAGCCTAGCTGTT-TTCAAA 1131
|||||||||||||||| || |||||||||||||||||||||||||| |||||| || |||
Sbjct 1073 CTTCCAACGGAGTCCTTCCTCAGTCTCCTATGCATACCAAAAGCCTTGCTGTTCTT-AAA 1131
Query 1132 CGACAGTTAATGCGGAGGAAGATGGTGATGACAGCCAAAGAAAGCATCAG-ACAGAAAGC 1190
|||||||| || |||||||||||||| | | | ||||||||||||||||| | ||| ||
Sbjct 1132 CGACAGTTGATCCGGAGGAAGATGGTAAAGTCGGCCAAAGAAAGCATCAGGA-AGAGAGA 1190
Query 1191 AACGTCCTCTCAAGTGTACGAGGATATGGAACAAGTCTTCATAGAAATGGACAAAAGCCC 1250
||| ||||| |||||||||||| ||||| || ||||||||||||||||||||||||| |
Sbjct 1191 AACTTCCTCACAAGTGTACGAGAATATGCAAGAAGTCTTCATAGAAATGGACAAAAGTC- 1249
Query 1251 A-CTTGCTGAGACACACACAA-CACTGATAAATGAGCTGCAAGATCTGAAAGAGGCAGTG 1308
| |||||| ||||| | | | || |||||| ||||||||||||||||||||| |||||
Sbjct 1250 ATCTTGCTCAGACAGAT-CTAGCAGTGATAATTGAGCTGCAAGATCTGAAAGAAGCAGTA 1308
Query 1309 ATGAAGAAG-AGTGACGACGACGGGGATACCGGCGAAG-AGAGTGGTTTCGATCCAGAGA 1366
||||||| | | ||| || || || || | | ||| |||||||||| ||||||||||
Sbjct 1309 ATGAAGA-GCAATGAGGAAGAAGGAGAGGGAGAC-AAGGAGAGTGGTTTTGATCCAGAGA 1366
Query 1367 AGCACGTTGACGCTTACTTGCCTGTTCGAGTCAACGAGCAGAGAGTGAGCAACCTGTTGC 1426
||||| |||||||||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1367 AGCACCTTGACGCTTATTTGCCTGTTAGAGTCAACGAGCAGAGAGTGAGCAACTTGTTGC 1426
Query 1427 AATCATTGCTAGTGATAGGTGCAGTGTTTGCTCTACCGGTCATTAAGCTCATACCGACTT 1486
| ||| |||| ||| |||||||||||| || | |||| ||||||||||||||| ||||
Sbjct 1427 AGTCACTGCTGGTGGCAGGTGCAGTGTTGGCAATGCCGGCCATTAAGCTCATACCTACTT 1486
Query 1487 C-ACTTCTATGGGGATATTTTGCTTACATGGCCATTGATAGCCTCCCAG-ACAATCAATT 1544
| | ||||||||||||| || |||||||||||||| ||||||||||| | | ||||||||
Sbjct 1487 CCA-TTCTATGGGGATACTTCGCTTACATGGCCATCGATAGCCTCCCGGGA-AATCAATT 1544
Query 1545 CTTCGAACGAACAGTACTTCTCTTCGTCCCACCAACCCGGAGATTCAAGGTCTTGGAAGG 1604
||||||||| ||| | ||||||||||| ||| ||| ||||||||||||||||||||| ||
Sbjct 1545 CTTCGAACGCACAATGCTTCTCTTCGTTCCAACAAGCCGGAGATTCAAGGTCTTGGAGGG 1604
Query 1605 AGCGCATGCATCGTTCGTGGAGAAAGTTCCGCATAAGTCAATCGCTGCATTCACGCTATT 1664
||| || || ||||||||||||||||||||| | |||||||| ||||| ||||| || ||
Sbjct 1605 AGCACACGCGTCGTTCGTGGAGAAAGTTCCGTACAAGTCAATGGCTGCGTTCACACTGTT 1664
Query 1665 TCAGATACTCTACTTTGGGCTTTGCTACGGAGTGACGTGGATTCCAGTGGCCGGAATCAT 1724
|||||| ||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1665 GCAGATATTCTACTTTGGGCTGTGCTATGGAGTGACGTGGATTCCGGTGGCTGGAATCAT 1724
Query 1725 GTTTCCGGTTCTTTTCTTCCTTTTAGTAGCCATCAGACAGTACCTTCTCCCTAAGCTCTT 1784
|||||| |||| ||||||||| ||| |||| |||||||||||| ||||||| ||||||||
Sbjct 1725 GTTTCCTGTTCCTTTCTTCCTCTTAATAGCTATCAGACAGTACATTCTCCCGAAGCTCTT 1784
Query 1785 TAAACCAG-CCTATCTCCGGGAACTCGATGCGGCGGAGTATGAGGAGATCCCTGGAACTC 1843
||| |||| || |||| || ||||| ||||| || ||||| || || ||||| || ||||
Sbjct 1785 TAA-CCAGGCCCATCTGCGAGAACTTGATGCCGCTGAGTACGAAGAAATCCCCGGCACTC 1843
Query 1844 CTAGAAACCCGCTTGAACTGTCTTTCAGGTCGAATAACTCGGCGAGAGGGGTCCAAGA-G 1902
||||||||||||| |||||||||||| |||||||| ||||| |||||| |||||||| |
Sbjct 1844 CTAGAAACCCGCTCGAACTGTCTTTCCGGTCGAATGACTCGAAGAGAGGTGTCCAAGAAG 1903
Query 1903 TGTGATGCTGAGATTCTAGACGAGTTAACAACGAGCAGAGGCGAGCTCAAAGTCCGTACA 1962
| |||||||||||| ||||||||||||| || |||||||||||||| |||||||| |||
Sbjct 1904 GG-GATGCTGAGATTTTAGACGAGTTAACGACAAGCAGAGGCGAGCTTAAAGTCCGCACA 1962
Query 1963 CTCGGTCATAACGAAGACAAAGGCCACCAGATATATCCCAAGGAGATAGTAGAA-GTAGG 2021
|| ||| ||||||||||| |||| ||||||| || |||||| ||| |||| || | |||
Sbjct 1963 GTCAGTCTTAACGAAGACAGAGGCAACCAGATTTACCCCAAGAAGACAGTA-AATGCAGG 2021
Query 2022 GGATGGGGACATGAGTTCTTCGAGAGAGTGA 2052
|| ||||||||||| | | |||||||||
Sbjct 2022 AGACGGGGACATGAGCACGACAAGAGAGTGA 2052
> Ahg316416 jgi|Araly1|316416|fgenesh1_pm.C_scaffold_2001449
Length=1887
Score = 1768 bits (957), Expect = 0.0
Identities = 1175/1277 (92%), Gaps = 28/1277 (2%)
Strand=Plus/Plus
Query 778 CCATCAAAACTACCCTCTGGTGTCCCGAGAAGACTCGTTAGTCCTCTTCCATGGGACTCT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 CCATCAAAACTACCCTCTGGTGTCCCGAGAAGACTCGTTAGTCCTCTTCCATGGGACTCT 696
Query 838 GTTTCTTTAACACATTGGACTGTCATCAAGGACATGGGTAAAGTCTCTCCCGGTTACATA 897
|||||||||| ||||||||||||||| | |||||||||| || ||||||
Sbjct 697 GTTTCTTTAAAACATTGGACTGTCAT------C-------AAGTCTCTCCGGGATACATA 743
Query 898 TTTGC-AGCGTTTATACCCGCATTGATGATCGCAGGCCTCTACTTCTTTGACCACAGCGT 956
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 744 TTTGCGGGCGTTTATACCCGCATTGATGATCGCAGGTCTCTACTTCTTTGACCACAGCGT 803
Query 957 TGTCTCGCAGCTCGCGCAGCAGAAGGAGTTTAACCTCAAGAACCCTTCTGCATATCACTA 1016
|||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||
Sbjct 804 TGTCTCGCAGCTCGCGCAGCAGGAGGAGTTCAACCTCAAGAACCCTTCTGCTTATCACTA 863
Query 1017 CGACATTCTCTTGTTAGGTTTCATGGTATTGATCTGTGGAATGCTCGGTCTACCGCCTTC 1076
||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||
Sbjct 864 CGACATTCTCTTGTTAGGTTTCATGGTGTTGATCTGTGGATTGCTCGGTCTGCCGCCTTC 923
Query 1077 CAACGGAGTCCTCCCGCAGTCTCCTATGCATACCAAAAGCCTAGCTGTTTTCAAACGACA 1136
|||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||
Sbjct 924 CAACGGAGTCCTCCCGCAGTCTCCTATGCATACCAAAAGCCTTGCTGTTTTC-AA--AC- 979
Query 1137 GTTAATGCGGAGGAAGATGGTGATGACAGCCAAAGAAAGCATCAGACAGAAAGCAACGTC 1196
| | | | ||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 980 G---A--C--A-GAAGATGGTAATGACAGCCAAAGAAAGCATCAGACAGAGAGCAACGTC 1031
Query 1197 CTCTCAAGTGTACGAGGATATGGAACAAGTCTTCATAGAAATGGACAAAAGCCCACTTGC 1256
|| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1032 TTCCCAAGTGTACGAGGATATGCAACAAGTCTTCATCGAAATGGACAAAAGCCCACTTGC 1091
Query 1257 TGAGACACACACAACACTGATAAATGAGCTGCAAGATCTGAAAGAGGCAGTGATGAAGAA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 TGAGACACACACAACACTGATAAATGAGCTGCAAGATCTGAAAGAGGCAGTGATGAAGAA 1151
Query 1317 GAGTGACGACGACGGGGATACCGGCGAAGAGAGTGGTTTCGATCCAGAGAAGCACGTTGA 1376
||| || |||| || ||||||| || |||||||||||||||||||||||||| |||||
Sbjct 1152 GAGCGAAAACGATGGATATACCGGAGACGAGAGTGGTTTCGATCCAGAGAAGCATGTTGA 1211
Query 1377 CGCTTACTTGCCTGTTCGAGTCAACGAGCAGAGAGTGAGCAACCTGTTGCAATCATTGCT 1436
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1212 CGCTTACTTGCCTGTTCGAGTCAACGAGCAGAGAGTAAGCAACCTGTTGCAATCACTGCT 1271
Query 1437 AGTGATAGGTGCAGTGTTTGCTCTACCGGTCATTAAGCTCATACCGACTTCACTTCTATG 1496
|||||||||||||||||||||| |||||| ||||||||||||||| || |||||||||||
Sbjct 1272 AGTGATAGGTGCAGTGTTTGCTATACCGGCCATTAAGCTCATACCTACCTCACTTCTATG 1331
Query 1497 GGGATATTTTGCTTACATGGCCATTGATAGCCTCCCAGACAATCAATTCTTCGAACGAAC 1556
||||||||| ||||||||||| || || || ||||||||||| |||||||||||||| ||
Sbjct 1332 GGGATATTTCGCTTACATGGCTATCGACAGTCTCCCAGACAACCAATTCTTCGAACGCAC 1391
Query 1557 AGTACTTCTCTTCGTCCCACCAACCCGGAGATTCAAGGTCTTGGAAGGAGCGCATGCATC 1616
||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||
Sbjct 1392 AGTACTTCTCTTCGTCCCACCAAGCCGGAGATTTAAGGTCTTGGAGGGAGCGCATGCATC 1451
Query 1617 GTTCGTGGAGAAAGTTCCGCATAAGTCAATCGCTGCATTCACGCTATTTCAGATACTCTA 1676
|||| |||| |||||||| |||||||| | ||||||||||| | ||||||||||||||
Sbjct 1452 GTTCCTGGAAAAAGTTCCATATAAGTCAGTGGCTGCATTCACATTGTTTCAGATACTCTA 1511
Query 1677 CTTTGGGCTTTGCTACGGAGTGACGTGGATTCCAGTGGCCGGAATCATGTTTCCGGTTCT 1736
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1512 CTTTGGGCTTTGTTACGGAGTGACGTGGATTCCAGTGGCCGAAATCATGTTTCCGGTTCT 1571
Query 1737 TTTCTTCCTTTTAGTAGCCATCAGACAGTACCTTCTCCCTAAGCTCTTTAAACCAGCCTA 1796
||||||||| || |||||||||| ||||||||||| |||||||| ||||||| |||| |
Sbjct 1572 TTTCTTCCTCCTAATAGCCATCAGGCAGTACCTTCTTCCTAAGCTGTTTAAACAAGCCCA 1631
Query 1797 TCTCCGGGAACTCGATGCGGCGGAGTATGAGGAGATCCCTGGAACTCCTAGAAACCCGCT 1856
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1632 TCTCCGGGAACTCGATGCCGCGGAGTACGAGGAGATCCCTGGAACTCCTAGAAACCCGCT 1691
Query 1857 TGAACTGTCTTTCAGGTCGAATAACTCGGCGA-GAGGGGTCCAAGAGTGTGATGCTGAGA 1915
|||||||||||||||||||| ||||||||| | |||| ||||||||||||||||| | ||
Sbjct 1692 TGAACTGTCTTTCAGGTCGACTAACTCGGC-ACGAGGCGTCCAAGAGTGTGATGCGGGGA 1750
Query 1916 TTCTAGACGAGTTAACAACGAGCAGAGGCGAGCTCAAAGTCCGTACACTCGGTCATAACG 1975
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1751 TTCTAGACGAGTTAACAACGAGCAGAGGCGAGCTTAAAGTCCGTACGCTCGGTCATAACG 1810
Query 1976 AAGACAAAGGCCACCAGATATATCCCAAGGAGATAGTAGAAGTAGGGGATGGGGACATGA 2035
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1811 AAGACAAAGGCCACCAGATATACCCCAAGGAGATAGTAGAAGTAGGGGATGTGGACATGA 1870
Query 2036 GTTCTTCGAGAGAGTGA 2052
|| |||| |||||||||
Sbjct 1871 GTACTTCCAGAGAGTGA 1887
Score = 717 bits (388), Expect = 0.0
Identities = 437/461 (95%), Gaps = 2/461 (0%)
Strand=Plus/Plus
Query 278 AACCATTGTTGATACTTGGAGTTGCAGAACCAACTGTCTTAATGTACAAATACTTGTACG 337
||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 AACCACTGCTGATACTTGGAGTTGCAGAACCAACTGTCTTAATGTACAAATACTTGTTCG 238
Query 338 ACTTCGCTAAAGGAAGACCTGAATTGGGCAAACAACTCTACTTAGCTTGGGTTGCTTGGG 397
||||||||||||||| ||| |||||| | ||||| |||||||||||| ||||||||||||
Sbjct 239 ACTTCGCTAAAGGAAAACCAGAATTGCGAAAACAGCTCTACTTAGCTAGGGTTGCTTGGG 298
Query 398 TTTGTGTGTGGACGGCTTTGTTACTATTCCTAATGGCGATATTCAACATGGCTTATATCA 457
||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||
Sbjct 299 TTTGTGTGTGGACGGCTTTGTTACTGTTCCTAATGGCGATATTCCACGTGGCTTATATCA 358
Query 458 TCAACCGGTTCACGAGGATCGCTGGTGAGCTGTTTGGTATGTTGATCGCTGTTCTATTTC 517
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 359 TCAACCGGTTCACGAGGATCGCTGGTGAGCTGTTTGGTATGTTGATCTCTGTTCTGTTTC 418
Query 518 TCCAACAAACCATAAAGGGA-ATGGTGAGTGAATTTAGGATTCCAAAAGGTGAAGACTCA 576
|||||||||||||||| | | ||| |||| ||||||||||||||||||||||||||||||
Sbjct 419 TCCAACAAACCATAAA-GAATATGTTGAGCGAATTTAGGATTCCAAAAGGTGAAGACTCA 477
Query 577 AAACTTGAAAAGTATCAGTTTGAGTGGCTCTACACAAACGGACTTCTTGGCCTTATTTTC 636
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 AAACTTGAAAAGTATCAGTTTGAGTGGCTCTACACAAACGGACTTCTCGGCCTTATTTTC 537
Query 637 ACAGTCGGTCTTGTCTACACCGCTTTGAAGAGCAGAAAAGCAAGGTCTTGGCCATACGGA 696
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 538 ACCGTCGGTCTTGTCTACACCGCTTTGAAGAGCAGAAAAGCAAGGTCTTGGCGATACGGA 597
Query 697 ACAGGATGTTGCCGAAGCTTCGTTGCAGACTACGGAGTTCC 737
|||||||| |||||||||||| |||||||||||||||||||
Sbjct 598 ACAGGATGGTGCCGAAGCTTCCTTGCAGACTACGGAGTTCC 638
Score = 233 bits (126), Expect = 3e-60
Identities = 169/188 (90%), Gaps = 10/188 (5%)
Strand=Plus/Plus
Query 56 ATGTCAAAGGAAGAGCCTTGTGTTACAAGCAAGACTGGATCGCTGGTCTACGTTCTGGTT 115
|||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1 ATGTCAGAGGAAGAGCCTTGTGTTACAAGCAAGACTGGGCCGCTGGTCTTCGTTCTGGTT 60
Query 116 TCGGGATTTTAGCACCGACAACATATGTTTTCTTCGCCTCTGCGCTTCCTGTTATTGCCT 175
|| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 TC--G------GCACCGACAACATATGTTTTCTTCGCCTCTGCGCTTCCTGTTATCGCCT 112
Query 176 TTGGCGAGCAACTTAGCCACGACACAGAGAGATCGTTGAGCACAGTGGAAACGTTAGCAT 235
||||||||||||| |||||||||||||||| ||||||||||||||||||||| || | |
Sbjct 113 TTGGCGAGCAACTCAGCCACGACACAGAGA--TCGTTGAGCACAGTGGAAACGCTAACGT 170
Query 236 CAACAGCG 243
||||||||
Sbjct 171 CAACAGCG 178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77170836370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5