BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74820.1
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926860 jgi|Araly1|926860|scaffold_202421.1 1081 0.0
> Ahg926860 jgi|Araly1|926860|scaffold_202421.1
Length=727
Score = 1081 bits (585), Expect = 0.0
Identities = 654/687 (95%), Gaps = 6/687 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCATATTTCACAAATCTCTTCTTTTCTCTCAATAGTTTTAATCTTCCTCGCATTA 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 24 ATGGCTCATATTTCACAAATCTCTTCTTTTCTCTCAAGAGTTTTAATCTTCCTTGCATTA 83
Query 61 TGCATCACTCTCTTCACGAACCCTACTCTCTCACTCCCAGCCCTAAAACTTAACCCTTTC 120
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 84 TGCATCACTCTCTTCACGAACCCTACTCTCGCACTCCCAGCCCTAAAACTTAACCCTTTA 143
Query 121 CAAGACTTTTGTGTAGCTGATCTCCAAGCTACCCCAACTAACAGTGG-TTACCCTTGCAA 179
||||| |||||||||||||||||||||||||| ||||| |||||||| || ||| |||||
Sbjct 144 CAAGAATTTTGTGTAGCTGATCTCCAAGCTACACCAACCAACAGTGGCTT-CCCCTGCAA 202
Query 180 GTCACAAGTCACCTCTGAAGACTTCTTTTATTCCGGCTTGAACACTCCTTTAAACACCTC 239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 203 GTCACAAGTCACCTCTGAAGACTTTTTTTATTCCGGCTTGAACACTCCTTTAAACACGTC 262
Query 240 GAACCCAAAAGGTATTGCCGCTAATCCAGCCAATCTCTTGACCTTTCCAGGCCTAAACAC 299
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 263 GAACCCAAAAGGTATTGCCGCTAATCCAGCCAATCTCTTGACCTTCCCGGGCCTAAACAC 322
Query 300 TTTGGGAATATCCATGTATAACGTTGCAATTGCACCTGGAGGATACAACCAACCTCACTC 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 323 TTTGGGAATATCCATGTACAACGTTGCAATTGCACCTGGAGGATACAACCAACCTCACTC 382
Query 360 TCACCCCGGTGTAACCGAGGCAGGGGTCGTGATCGAAGGCTCGGTCTTGGTTGGGTTCTT 419
||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 383 TCACCCCGGTGCGACCGAGGCAGGGGTCGTGATCGAAGGTTGGGTCTTGGTTGGGTTCTT 442
Query 420 AACGACTAACTACACGTTGTACTCGAAGGTTATTGGACCCGGTGATATGTTTGTGATTCC 479
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 443 GACGACTAACAACACGTTGTACTCGAAGGTTATTGGACCTGGTGATATGTTTGTGATTCC 502
Query 480 TCCGGGACTCATTCATTACGAGGGGAACGTTGGGAAAACGCAATGCCGTCTTTTGACGGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 TCCGGGACTCATTCATTACGAGGGGAACGTTGGGAAAACGCAATGCCGTCTTTTGACGGT 562
Query 540 GGTTGCTGACGACTTGCCTAGCGAGGTTGGTGTGCCTCACACTCTGTTGGCTACGAAACC 599
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 563 TGTTGCTGACGACTTGCCTAGCGAGGTTGGTGTGCCTCACACTCTGTTTGCTACGAAACC 622
Query 600 CGCGATTCCA-AA-CGAGGTATTGATATCGGCGTTTAAGGCGGATAGTAAAACAATCAAC 657
|||||||||| || | || ||||||| ||||||| ||||||||||||||||||||| ||
Sbjct 623 CGCGATTCCAGAAGC-AG-TATTGATGGCGGCGTTCAAGGCGGATAGTAAAACAATCGAC 680
Query 658 ATGCTCAGGTCAAAGTTTACTGCTTAA 684
||||||||||||||||||||| |||||
Sbjct 681 ATGCTCAGGTCAAAGTTTACTACTTAA 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25123002303
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5