BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74830.1
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316417 jgi|Araly1|316417|fgenesh1_pm.C_scaffold_2001450 2529 0.0
Ahg472122 jgi|Araly1|472122|fgenesh2_kg.1__2076__AT1G18990.1 169 8e-41
> Ahg316417 jgi|Araly1|316417|fgenesh1_pm.C_scaffold_2001450
Length=1632
Score = 2529 bits (1369), Expect = 0.0
Identities = 1553/1640 (95%), Gaps = 19/1640 (1%)
Strand=Plus/Plus
Query 37 ATGTATATACAATTGCTCTGTTTTTTCTTGTTCTTGTTTCTGCTTTTACAAGCCACAATG 96
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTTTATACAATTGCTCTGTTTTTTCTTGTTCTTGTTACTGCTTTTACAAGCCACAATG 60
Query 97 TCTAAACGTTCTTTCAAGAAATTTGTGGAACAAGAACTCGGATCTCTTCCTCATTTCCTC 156
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 TCTAAACGTTCTTTCAAGAAATTTGTGGAACAAGAACTCGGATCTCGTCCTCATTTCCTC 120
Query 157 ATCTACACTGTTCTTGAATGGAGCCTCATTGTTTTCCTCTTCATCGACGGCGTTATCGCC 216
|||||||| |||||||||||||||||||| ||| ||||||||||||||||| | ||||||
Sbjct 121 ATCTACACGGTTCTTGAATGGAGCCTCATCGTTATCCTCTTCATCGACGGCATAATCGCC 180
Query 217 TTTCTGTCAAACCAAT-TCGCCAAATTCTTCGACCTCAACATTCCTTGTCTTCTCTGCAC 275
||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTCTATCAAACCAATAT-GCCAAATTCTTCGACCTCAACATTCCTTGTCTTCTCTGCAC 239
Query 276 CAGAATCGACCACATTCTCGTCCCTAGAGACCCTCAATTCTATTACAACGAGTCAATCTG 335
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 240 CAGAATCGACCACATTCTCGTCCCTAGAGACCCTCGATTCTATTACAATGAGTCAATCTG 299
Query 336 CGACTCTCACAAGAAGAAAGTATCTTCTCTTGCTTATTGCCATGTCCATAAGAAGCTCTC 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 CGACTCTCACAAGAAGAAAGTATCTTCTCTTGCTTATTGCCATGTCCATAAGAAGCTATC 359
Query 396 TGAGATTAAACATATGTGTGAAGGATGTCTTCTCTCTTTCGCCACCGAGAAAGATTCTGA 455
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 TGAGATCAAACATATGTGTGAAGGATGTCTTCTCTCTTTCGCCACCGAGAAAGAATCTGA 419
Query 456 CTGTGATACTTATAAGTCTCTCATTGGCATCTTACATAAAGATCTCGAGCTTCTCATTGA 515
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 CTGTGATACTTATAAGTCTCTCATTGGCATCTTACACAAAGATCTCGAGCTTCTCATTGA 479
Query 516 CGATGAACGAGACCTTCCCTTGGCGTTCAAGAAAGACGACAA-TTTAGTCCAGACAACAA 574
|||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 480 CGATGAACGAGAGCTTCCCTTGGCGTTCAAGAAAGACGACAATTTTA-TTCAGACAACAA 538
Query 575 AAAATCTGGTGGATTACAAGACTAACAACATTAAAAATGATAGCTTGAAGCAACATTGTT 634
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 539 AAAATCTGGTGGATCACAAG---AACAACATTAAAAATGATAGCTTGAAGCAACATTGTT 595
Query 635 CGTGTTGTGGAGAATTATTGAAGATAAAATCTGAGAAGTTACCGAAGAACAACAATTCTT 694
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 596 CGTGTTGCGGAGAATTATTGAAGATAAAATCTGAGAAGTTGCCGAATAACAACAATTCTT 655
Query 695 TCCTTGCTCCTGCTCCTTCTCCTAGGGTATCGCACAACAAACTGTCTGAAA-ACGAATCT 753
|||||||||||||||||||||||||||| ||| |||||||||||||||||| | ||||||
Sbjct 656 TCCTTGCTCCTGCTCCTTCTCCTAGGGTTTCGAACAACAAACTGTCTGAAAGA-GAATCT 714
Query 754 GAGTTTAAGGATATGGATGTGGACCGAACACCAAGTTTTGTAAGAGGAGGTAACAAGTTT 813
|||||||||||| | ||||||||| ||||||| || ||||| ||||||||||||||||||
Sbjct 715 GAGTTTAAGGATCTAGATGTGGACAGAACACCGAGCTTTGTTAGAGGAGGTAACAAGTTT 774
Query 814 TTTGGGATCCCTCTGTCTGATTCGGCGCAAAACAGTCCACGATGGTCCGTTCGATCTCTT 873
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 775 TTTGGGATCCCTCTGTCTGATTCGGTGCAAAATAGTCCACGATGGTCCGTTCGATCTCTT 834
Query 874 AAGAAATC-CGTTTTGAATAAGACAGAGAATGCTTCGGACACGACAGATCCAACCGGTGA 932
|||||||| | ||||| |||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 835 AAGAAATCTC-TTTTGGATAAGACAGAGAATGCTTCGGACACGGCAGATCCAAACGGTGA 893
Query 933 ATCCATTCTTAATCAGCTCAAGAAAGAGGTTCGCTTGGACAAGAAGTCACTCATTGATTT 992
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ATCCATCCTTAATCAGCTCAAGAAAGAGGTTCGCTTGGACAAGAAGTCACTCATTGATTT 953
Query 993 ATATATGGAGTTAGATGAAGAGAGAAGTGCTTCAGCTGTTGCAGCCAACGAAGCGATGGC 1052
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GTATATGGAGTTAGATGAAGAGAGAAGTGCTTCAGCTGTTGCAGCCAACGAAGCGATGGC 1013
Query 1053 TATGATCACGAGGCTTCAAGCCGAGAAAGCTGCTGTTCAAATGGAGGCTTTGCAGTACCA 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TATGATCACGAGGCTTCAAGCCGAGAAAGCTGCTGTTCAAATGGAGGCTTTGCAGTACCA 1073
Query 1113 AAGAATGATGGATGAACAAGCAGAGTATGACCAAGAAGCTTTGCAGTCTATGAGTAGTGA 1172
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1074 AAGAATGATGGATGAACAAGCAGAGTATGACCAAGAAGCTTTGCAGTCGATGAGTACCGA 1133
Query 1173 ATTGGCGAAGAGGGAAGAGGAAATGAAGGAGCTTGAAGCTGAATTTGAGGTTTACAGAGA 1232
||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1134 ATTGGCGAAGAGGGAGGAGGAAATGAAGGAGCTTGAAGCTGAGTTTGAGGCTTACAGAGA 1193
Query 1233 GAAATATGGATGTTTGACTGATCAAGAAGATGCAAGGGAAGAGTTTCATAAACAAAACGG 1292
|||||||||| ||||||| ||| ||||||||||||| |||||||||||| ||||||||||
Sbjct 1194 GAAATATGGAAGTTTGACAGATGAAGAAGATGCAAGAGAAGAGTTTCATGAACAAAACGG 1253
Query 1293 CAATGCTAGTGCATATGATGATTGCCAAGAAACCAAACCAGTCTCGGATTT-GGCTGTCT 1351
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1254 CAATGCTAGTGCAAATGATGATTGCCAAGAAACCAAACCAGTCTCGGATTTAGGC-GTCT 1312
Query 1352 CTTCTTCAAATCAGCAGGAAAATGGCGAAAACATCGATCAAAATGGG-C-A---A-TCGA 1405
|||||| |||||| |||| ||||||||||||||||||| ||||||| | | | || |
Sbjct 1313 GTTCTTCTAATCAGGAGGAGAATGGCGAAAACATCGATCGAAATGGGTCTACTCAATCTA 1372
Query 1406 AAAGGTCAGAGGAGTCTACCGCGGAGAATGTTGTCTCTGCAGATGAAGAAAAAGGGAGTG 1465
||||||||||||||||||||||||| || | |||||||||||||||||||||||||| |
Sbjct 1373 AAAGGTCAGAGGAGTCTACCGCGGAAAAGGATGTCTCTGCAGATGAAGAAAAAGGGACAG 1432
Query 1466 AAAGCAAAGAAGGGATAGTAAAAGAGCTTTCAGAGATCACAGAGAGACTAAGTACTCTTC 1525
| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1433 AGAGCAAAGAAGGGATAGTAAAAGAGCTTTCAGATATCACAGAGAGACTAAGTGCTCTTC 1492
Query 1526 AATCAAATGGTGATTTATTGAAACACATTGCTGATGTTTTGGATGTTAGTGAAGGAGAAG 1585
|||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1493 AATCAAATGGTGATCTGTTGAAACATATTGCTGATGTTTTGGATGTTAGTGAAGGAGAAG 1552
Query 1586 CAATTCTATTGCAGATATCTCAGAATTTGCACATGCTTCGTAGTTTTGTTGCTATGCCTT 1645
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 CAATTCTACTGCAGATCTCTCAGAATTTGCACATGCTTCGTAGTTTTGTTGCTATGCCTT 1612
Query 1646 CTGAATCCATGAACTTGTAA 1665
| ||||||||||||||||||
Sbjct 1613 CAGAATCCATGAACTTGTAA 1632
> Ahg472122 jgi|Araly1|472122|fgenesh2_kg.1__2076__AT1G18990.1
Length=1678
Score = 169 bits (91), Expect = 8e-41
Identities = 175/216 (81%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 1446 AGATGAAGAAAAAGGGAGT-GAA--AGCAAAGAAGGGATAGTAAAAGAGCTTTCAGAGAT 1502
||| |||||||||| || | ||| || ||||| | | |||| || || | ||||||||
Sbjct 1391 AGAGGAAGAAAAAGAGAATGGAAGCAGAAAAGATGTGTTAGTGAAGGAAATCTCAGAGAT 1450
Query 1503 CACAGAGAGACTAAGTACTCTTCAATCAAATGGTGATTTATTGAAACACATTGCTGATGT 1562
||||||||||||| | | || ||||||| ||||| || ||| | || ||| | |||||
Sbjct 1451 TACAGAGAGACTAAATGCAATTGAATCAAAAGGTGAATTGTTGCAGCAAATTTCAGATGT 1510
Query 1563 TTTGGATGTTAGTGAAGGAGAAGCAATTCTATTGCAGATATCTCAGAATTTGCACATGCT 1622
||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||
Sbjct 1511 TTTAGATGTTAGTGAAGGAGAAGCAATTCTATTACAGATATCTCAAAATCTGCATATGCT 1570
Query 1623 TCGTAGTTTTGTTGCTATGCCTTCTGAATCCATGAA 1658
||||||||| ||| ||||| || ||||| |||||
Sbjct 1571 TCGTAGTTTCATTGAAATGCCATCAGAATC-ATGAA 1605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64182062825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5