BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74840.1
Length=1190
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476620 jgi|Araly1|476620|fgenesh2_kg.2__1750__AT1G74840.1 1539 0.0
Ahg472123 jgi|Araly1|472123|fgenesh2_kg.1__2077__AT1G19000.2 209 3e-53
> Ahg476620 jgi|Araly1|476620|fgenesh2_kg.2__1750__AT1G74840.1
Length=1143
Score = 1539 bits (833), Expect = 0.0
Identities = 1046/1144 (91%), Gaps = 33/1144 (3%)
Strand=Plus/Plus
Query 54 AAGAAAGCACAAGGGGCAAAATCGGAAAGATTATCATGGCCGACGGTAGTACTAGTTCTT 113
|||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 26 AAGAAAGCGCAAAGGGCAAAATCGGAAATATTATTATGGCCGACGGTAGTACTAGTTCGT 85
Query 114 CGGAGTCCACTACCGCCTGCGCTGGAAGCGGCACAAGAAGAGAGATTATGCTGTTCGGAG 173
|||||||||| | ||||||| | ||| ||||||| ||||||||||||||||||||||| |
Sbjct 86 CGGAGTCCACCAACGCCTGCTCCGGAGGCGGCACGAGAAGAGAGATTATGCTGTTCGGCG 145
Query 174 TCAGGGTTGTGCTTGACCCGATGAGAAAGTGCGTGAGTTTGAACAATCTGTCTGACTATG 233
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 146 TCAGGGTTGTGCTTGACCCGATGAGAAAGTGCGTGAGTTTGAACAATTTGTCCGAGTATG 205
Query 234 AACAGACGGCGGAGACTCCAAAGATCGACGGCGAAGATAGAGATGAACAAGATATGAACA 293
| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 206 AGCAGACGGCGGAGACTCCAAAGATCGACGGCGAGGATAGAGATGGACAAGATATGAACA 265
Query 294 AAACCCCGGCCGGTTACGCCTCGGCGGATGAAGCTCTTCCCATGTCTTCTTCTAACGGCA 353
||||||| |||||||||||||||||||||||||||||||| || ||||||||||||| |
Sbjct 266 AAACCCCCGCCGGTTACGCCTCGGCGGATGAAGCTCTTCCGATTTCTTCTTCTAACGTTA 325
Query 354 AAATCGAGAGGAAACGAGGAGTTCCATGGACTGAAGAAGAACACAAGCTGTTCTTGCTTG 413
| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 326 ACCGCGAGAGAAAACGAGGAGTTCCATGGACTGAAGAAGAACACAAGCTGTTCTTACTTG 385
Query 414 GGCTGCAGAGAGTCGGTAAAGGAGATTGGAAAGGAATATCAAGAAACTTTGTCAAGACCA 473
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 386 GGCTGCAGAGAGTAGGTAAAGGAGATTGGAAAGGAATATCCAGAAACTTTGTCAAGAGCA 445
Query 474 GAACCTCTACACAAGTTGCTAGTCATGCTCAGAAATACTTCCTCAGGCGAAGTAATCTTA 533
| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 446 GGACCTCTACACAAGTTGCTAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAATCTTA 505
Query 534 ACCGTCGCCGCCGAAGATCTAGCCTTTTTGACATGACTACTGATACGGTCATA-C-CC-A 590
||||||||||||||||||||||||||||||||||||||||||||||||| | | | || |
Sbjct 506 ACCGTCGCCGCCGAAGATCTAGCCTTTTTGACATGACTACTGATACGGT-AAATCTCCAA 564
Query 591 T-GGAAGAAGATCACCAAGTGCTTATACAGGAGAACACATCTCAATCATCTTCTCCTGTA 649
| |||||| ||| || |||||||| |||||||| |||| |||| |||||||||||||
Sbjct 565 TCGGAAGATGAT---CAGGTGCTTATGCAGGAGAATGCATCACAATTATCTTCTCCTGTA 621
Query 650 CCGGAAATCAACAACTTCTCTATACATCCGGTTATGCAAGTCTTTCCCGAGTTCCCGGTA 709
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 CCTGAAATCAACAACTTCTCTATACATCCGGTTATGCAAGTCTTTCCCGAGTTCCCGGTA 681
Query 710 CCAACAGGGAATCAATCATACGGACAGCTTACTTCATCGAATCTCATCAATTTGGTTCCA 769
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 682 CCAACAGGGAATCAATCATACGGACAGCTGACTTCCTCGAATCTCATCAAGTTGGTTCCA 741
Query 770 TTAACTTTTCAGTCAAGTCCAGCACCGCTTTCTCTCAACCTCTCACTAGCTTCATCTAAT 829
||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 742 TTAACTTTTCAATCAAGTCCTGCACCGCTCTCTCTCAACCTGTCACTAGCTTCATCTAAT 801
Query 830 CTTAATGAACCATCTCCTTCAATGCATCCAGCATTCAACACGATTGGAGTCGCTTAGAGC 889
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 802 CTTAATGAACCATCTCCTTCAATGCATTCAGCATTCAACACGATTGGAGTCGCTTAGAGC 861
Query 890 TTATCCTAAAGGTGAAAATCTGCAACACACCCTGTTTGTTTCTTTGCTGTACAGATAGGT 949
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 862 ATATCCGAAAGGTGAAAATCTGCAACACACCCTGTTTGTTTCTTTGTTGTACAGATAGGT 921
Query 950 CTTGACTTTGTTATaaaaaaaTTCGTCAAATTTATGTATTTGGCTaaaaaaaaTCTGTTG 1009
||||||||||||||||||| ||||||||| | ||||||||||||||| |
Sbjct 922 CTTGACTTTGTTATAAAAA--TTCGTCAAACTCATGTATTTGGCTAAA-----T------ 968
Query 1010 AAAAGAAGAATAATAAACAGAGTTTGGAGATAGGACTTAAGTGGGGTTTTAGGGTTCATA 1069
||||||| ||| ||||||||||||||||||| ||| |||||| |||||||||||||
Sbjct 969 AAAAGAA---TAAGAAACAGAGTTTGGAGATAGAACT-AAGTGGCTTTTTAGGGTTCATG 1024
Query 1070 ATCATCCTGTGTTTTTCCTTCCATGTTTGGAAG-TTGTTGTAATACTCTCTAAGTTCATT 1128
|||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1025 ATCATCCTGT-TTTTTCCTTCCATGTTTGGCGGGTTGTTGTAATACTCTCTAAGTTCATT 1083
Query 1129 CGTGTGGATCTATCAAAACTTATA-A-ATCATATTAACGTTATGTTTGTTTTATTCATGA 1186
||||||||||| |||||||||||| | ||||| |||||||||||||| | ||||||||
Sbjct 1084 CGTGTGGATCTGTCAAAACTTATATATATCATGTTAACGTTATGTTT-T---ATTCATGA 1139
Query 1187 TCTC 1190
||||
Sbjct 1140 TCTC 1143
> Ahg472123 jgi|Araly1|472123|fgenesh2_kg.1__2077__AT1G19000.2
Length=1467
Score = 209 bits (113), Expect = 3e-53
Identities = 190/227 (84%), Gaps = 6/227 (3%)
Strand=Plus/Plus
Query 361 GAGGAAACGA-GGAGTTCCATGGACTGAAGAA-GAACACAAGCTGTTCTTGCTTGGGCTG 418
|||||||||| ||| |||||||||| | |||| || |||||| ||||||| ||||| |
Sbjct 392 GAGGAAACGAGGGA-TTCCATGGACAG-AGAATGAGCACAAGAGGTTCTTGATTGGGTTA 449
Query 419 CAGAGAGTCGGTAAAGGAGATTGGAAAGGAATATCAAGAAACTTTGTCAAGACCAGAACC 478
|||| ||| || ||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 450 CAGAAAGTAGGAAAAGGAGATTGGAAAGGAATATCAAGAAACTTTGTGAAGAGTAGGAC- 508
Query 479 TC-TACACAAGTTGCTAGTCATGCTCAGAAATACTTCCTCAGGCGAAGTAATCTTAACCG 537
|| ||| ||||| |||||||| |||||||||||||||||| | |||| || || || ||
Sbjct 509 TCCTACTCAAGTAGCTAGTCACGCTCAGAAATACTTCCTCCGACGAACCAACCTCAATCG 568
Query 538 TCGCCGCCGAAGATCTAGCCTTTTTGACATGACTACTGATACGGTCA 584
||| | ||||||||||||||||| || || |||||||| |||||||
Sbjct 569 TCGTAGGCGAAGATCTAGCCTTTTCGATATCACTACTGAGACGGTCA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44413198305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5