BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G74860.1 Length=1598 Score E Sequences producing significant alignments: (Bits) Value Ahg476622 jgi|Araly1|476622|fgenesh2_kg.2__1752__AT1G74860.1 2364 0.0 > Ahg476622 jgi|Araly1|476622|fgenesh2_kg.2__1752__AT1G74860.1 Length=1572 Score = 2364 bits (1280), Expect = 0.0 Identities = 1492/1590 (94%), Gaps = 31/1590 (2%) Strand=Plus/Plus Query 22 aaCCTTTTTAGCTTTTTCTTTCTTCTTGGCGAGTTCGCGACCTTGGTCGGAAAATCAACA 81 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AACCTTTTTAGCTTTTTCTTTCTTCTTGGCGAGTTCGCGACCTTGGTCGGAAAATCAACA 60 Query 82 ATCGCTTCTCTGCAATCGCATTATCGGCTCTAATGGCAGACCCAGAGACCTTAGCGGCGT 141 ||||||||||||||||| |||||||||| |||||||| |||| ||||||||||||||||| Sbjct 61 ATCGCTTCTCTGCAATCTCATTATCGGCGCTAATGGCTGACCAAGAGACCTTAGCGGCGT 120 Query 142 TGAAGAGAGCCTACGCCGATACGATACTGAACACGACGAAGGAAGCGGCGGCACGTGTGA 201 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 121 TGAAGAGAGCCTACGCCGATACGATACTGAACACAACGAAGGAAGCGGCGGCGCGTGTGA 180 Query 202 TGGTTTCTGAGAAGAAGGCGCGTAGGTATCAGCAAGAACTTGTGACGGTTAGAAATGAAG 261 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 181 TGGTTTCTGAGAAGAAGGCGCGTAGGTATCAGCAAGAACTTGCGACGGTTAGAGATGAAG 240 Query 262 CACTTCATACGTTGGTTAGGCTTAAACAGATGCTTGATTCCAAGGTTAAGGAGACAGAGA 321 ||||||| |||||| ||||||||||||||||||||||||||||||| || ||||| |||| Sbjct 241 CACTTCAGACGTTGCTTAGGCTTAAACAGATGCTTGATTCCAAGGTCAAAGAGACGGAGA 300 Query 322 TGCAATCCTTGAAGCAGCAACAGAAGGTTGAGGAACTTGAAGCTCAGCTTGGAGAAGCTG 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TGCAATCCTTGAAGCAGCAACAGAAGGTTGAGGAACTTGAAGCTCAGCTTGGAGAAGCTG 360 Query 382 AAGATATTGTAGGAGAGCTGAGGTTGGAGTTGAGAGTACTTCACGATGAGCTCAAGAAAC 441 ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| Sbjct 361 AAGATATTGTAGGAGAGCTGAGGATGGAGTTGAGAGTACTCCACAATGAGCTCAAGAAAC 420 Query 442 TTACGGATGGTCAGAAACATCTTAAAAA-GAATCATGAGGAAAACCTCTGTTGGAATAAC 500 ||||| ||||||||| ||||||||||| || |||||||||| ||| |||| |||||||| Sbjct 421 TTACGAATGGTCAGACACATCTTAAAAGTGA-TCATGAGGAAGACCCCTGTGGGAATAAC 479 Query 501 CGTGATGCTGCAGTTTCTGTAATGCCTGAGGTTTCTTGCAGTCACGAGAACACAGAAGCT 560 || |||||||||||||||||| |||||||||||||||||||||||| |||||||||| || Sbjct 480 CGCGATGCTGCAGTTTCTGTAGTGCCTGAGGTTTCTTGCAGTCACGGGAACACAGAACCT 539 Query 561 GTAGGTTTTTGCATCCCAGTGGAACAAAATGGATCAGTGGTGGCTAATGGGATAAAAGTA 620 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 540 GTAGGTTTTTGCATCCCAGTGGAACAAAGTGGATCTGTGGTGGCTAATGGGATAAAAGTA 599 Query 621 CC-GTCTTTGACTCGCATAAATAGTATTAACCGGTGTTCTTATAAAGATAACAAGGATCA 679 || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 CCAG-CTTTGACTCGCATAAATAGTATTAACCGGTGTTCTTATAAAGATAACAAGGATCA 658 Query 680 ATGTCACTACACTCTTCCATCTATACTGACAAAACGCAGGGAAACTGAAGGTTTAGCTCA 739 |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 659 GTGTCACCACACTCTTCCATCTATACTGACAAAACGCAGGGAAGCTGAAGGTTTAGCTCA 718 Query 740 GATGATCCACACAGTAGATAGCAGTATGGCCAATGGGGTTCTGTCTTCCTCTGTAGAAGT 799 |||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 719 GATGATCCACGCAGTAGATAGCAGTATGGCCAATGGGGTTCTCTCGTCCTCTGTAGAAGT 778 Query 800 AGGAGATGTGAATGATGGAGTATGTCTTCACGAAGTTTCGTCTTGTAAAATTGTAGAGAG 859 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 779 AGGAGATGTGAATGATGGAGTATGTCTTCACAAAGTTTCGTCTTGTAAAATTGTAGAGAC 838 Query 860 CTTAGAAATGTCTGGTTGTGCTGATGCTACTGACTCCATATCTTCTGTTAAAGATGGAGA 919 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 839 CTTAGAAATGTCTGGTTGTGCTGATGCTACTGACTCCATATCTACTGTTAGAGATGGAGA 898 Query 920 AGCCCC-AATAGTGTCTCCAAACTCTTCTCAGAAGGATGTCGGCACTCTTATATCCTTGA 978 |||||| || ||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 899 AGCCCCGAA-AGTGTCTCCAAACTCTTCTCAGAAGGAAGTCGGCACTCTTGTATCCTTGA 957 Query 979 AAACATCTCCTCCGAGGGAACATGAAAATGACAGAAAGCTGGAGATTAGCGAAACAGAGG 1038 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 TAACATCTCCTCCGAGGGAACATGAAAATGACAGAAAGCTGGAGATTAGCGAAACAGAGG 1017 Query 1039 CAAGGAAGGAAGAAAAAGAGAGCTGTGAGAATATGGAGGTTTCTGCATCTCCTTTGTGCG 1098 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1018 CGAGGAAGGAAGAAAAAGAGAGCTGTGAGAATATGGAGGTTTCGGCATCTCCTTTGTGCG 1077 Query 1099 AAGAAACTCCAGTTTTAGCACTGAGTAAAAATCGGTGCATCAAGTACACGTTCAAGAGGA 1158 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 1078 AAGAAACTCCAGTTTTAGCACTTAGTAAAAATCGGTGTATCAAGTACACGTTCAAGAGGA 1137 Query 1159 AGAGAAAGAAGGAGGTCTTAAGTAA---TCTTGAAGGAGATTCCTCGTTTGAGGAGAGTA 1215 |||||||||||||||| ||||| || |||||||||||||||||||||||||||||| | Sbjct 1138 AGAGAAAGAAGGAGGTGTTAAGCAACAATCTTGAAGGAGATTCCTCGTTTGAGGAGAGCA 1197 Query 1216 GAAACATGAAACAGAAGACTGTTGAGAAAGACGATGGTTACTTGGAGTCTCTGAAGCCTA 1275 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1198 GAAACATGAAACAGAAGACTGGTGAGAAAGACGATGGTTACTTGGAGTCTCTGAAGCCTA 1257 Query 1276 GCTTTACCAGTGAATCATCTAGAGATGTAGTCTATGCTTAGCACATGTGGCTTGGAAGGT 1335 |||| ||||||||||||||| | |||||||||||||||||||||| |||||||||||||| Sbjct 1258 GCTTCACCAGTGAATCATCTCGGGATGTAGTCTATGCTTAGCACAGGTGGCTTGGAAGGT 1317 Query 1336 TAGTAAATATCGACATACATCTAATTTGCTATATCATATTAAGTTTATTATGTTTCCTTC 1395 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1318 TAGTAAATATCAACATACATCTAATTTGCTATATCATATTAAGTTTCTTATGTTTCCTTC 1377 Query 1396 TTGCCTTTAAACTTGAAAGTGTATGGTCTAAAAACTGATATCAGTAGCAGTGCCCTTTTG 1455 ||||| | ||| | | | || | ||||||||||| ||||| ||| |||||||||||| Sbjct 1378 TTGCCGTGAAAGT--AT--T-TA-G-TCTAAAAACTGGTATCACTAGTAGTGCCCTTTTG 1430 Query 1456 TTGCATTATGGTTTTGGGTGTAAACTCTTGTCCATTGTGATGGGTTTATATATATAT--- 1512 ||||||| | | ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1431 TTGCATT-T--T---GGGTGTAAACTCTTGTCGATTGTGATGGGTTTATATATATATATA 1484 Query 1513 ---GATGTCCAAGATTCTGAATGTT-CTATGTTTCTTTATTGTATTTTAATGGGCACAGC 1568 ||||||||||||||||| | || ||||||||||||| |||||||| |||||||||| Sbjct 1485 TATGATGTCCAAGATTCTGACTTTTTCTATGTTTCTTTA--GTATTTTACTGGGCACAGC 1542 Query 1569 TTGTACCATTCTCGTAGAATAAAGATTTGC 1598 ||||||||||||||||||| |||||||||| Sbjct 1543 TTGTACCATTCTCGTAGAAGAAAGATTTGC 1572 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59877865140 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5