BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74860.1
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476622 jgi|Araly1|476622|fgenesh2_kg.2__1752__AT1G74860.1 2364 0.0
> Ahg476622 jgi|Araly1|476622|fgenesh2_kg.2__1752__AT1G74860.1
Length=1572
Score = 2364 bits (1280), Expect = 0.0
Identities = 1492/1590 (94%), Gaps = 31/1590 (2%)
Strand=Plus/Plus
Query 22 aaCCTTTTTAGCTTTTTCTTTCTTCTTGGCGAGTTCGCGACCTTGGTCGGAAAATCAACA 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACCTTTTTAGCTTTTTCTTTCTTCTTGGCGAGTTCGCGACCTTGGTCGGAAAATCAACA 60
Query 82 ATCGCTTCTCTGCAATCGCATTATCGGCTCTAATGGCAGACCCAGAGACCTTAGCGGCGT 141
||||||||||||||||| |||||||||| |||||||| |||| |||||||||||||||||
Sbjct 61 ATCGCTTCTCTGCAATCTCATTATCGGCGCTAATGGCTGACCAAGAGACCTTAGCGGCGT 120
Query 142 TGAAGAGAGCCTACGCCGATACGATACTGAACACGACGAAGGAAGCGGCGGCACGTGTGA 201
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 121 TGAAGAGAGCCTACGCCGATACGATACTGAACACAACGAAGGAAGCGGCGGCGCGTGTGA 180
Query 202 TGGTTTCTGAGAAGAAGGCGCGTAGGTATCAGCAAGAACTTGTGACGGTTAGAAATGAAG 261
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 181 TGGTTTCTGAGAAGAAGGCGCGTAGGTATCAGCAAGAACTTGCGACGGTTAGAGATGAAG 240
Query 262 CACTTCATACGTTGGTTAGGCTTAAACAGATGCTTGATTCCAAGGTTAAGGAGACAGAGA 321
||||||| |||||| ||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 241 CACTTCAGACGTTGCTTAGGCTTAAACAGATGCTTGATTCCAAGGTCAAAGAGACGGAGA 300
Query 322 TGCAATCCTTGAAGCAGCAACAGAAGGTTGAGGAACTTGAAGCTCAGCTTGGAGAAGCTG 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGCAATCCTTGAAGCAGCAACAGAAGGTTGAGGAACTTGAAGCTCAGCTTGGAGAAGCTG 360
Query 382 AAGATATTGTAGGAGAGCTGAGGTTGGAGTTGAGAGTACTTCACGATGAGCTCAAGAAAC 441
||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||
Sbjct 361 AAGATATTGTAGGAGAGCTGAGGATGGAGTTGAGAGTACTCCACAATGAGCTCAAGAAAC 420
Query 442 TTACGGATGGTCAGAAACATCTTAAAAA-GAATCATGAGGAAAACCTCTGTTGGAATAAC 500
||||| ||||||||| ||||||||||| || |||||||||| ||| |||| ||||||||
Sbjct 421 TTACGAATGGTCAGACACATCTTAAAAGTGA-TCATGAGGAAGACCCCTGTGGGAATAAC 479
Query 501 CGTGATGCTGCAGTTTCTGTAATGCCTGAGGTTTCTTGCAGTCACGAGAACACAGAAGCT 560
|| |||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 480 CGCGATGCTGCAGTTTCTGTAGTGCCTGAGGTTTCTTGCAGTCACGGGAACACAGAACCT 539
Query 561 GTAGGTTTTTGCATCCCAGTGGAACAAAATGGATCAGTGGTGGCTAATGGGATAAAAGTA 620
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 540 GTAGGTTTTTGCATCCCAGTGGAACAAAGTGGATCTGTGGTGGCTAATGGGATAAAAGTA 599
Query 621 CC-GTCTTTGACTCGCATAAATAGTATTAACCGGTGTTCTTATAAAGATAACAAGGATCA 679
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CCAG-CTTTGACTCGCATAAATAGTATTAACCGGTGTTCTTATAAAGATAACAAGGATCA 658
Query 680 ATGTCACTACACTCTTCCATCTATACTGACAAAACGCAGGGAAACTGAAGGTTTAGCTCA 739
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 659 GTGTCACCACACTCTTCCATCTATACTGACAAAACGCAGGGAAGCTGAAGGTTTAGCTCA 718
Query 740 GATGATCCACACAGTAGATAGCAGTATGGCCAATGGGGTTCTGTCTTCCTCTGTAGAAGT 799
|||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 719 GATGATCCACGCAGTAGATAGCAGTATGGCCAATGGGGTTCTCTCGTCCTCTGTAGAAGT 778
Query 800 AGGAGATGTGAATGATGGAGTATGTCTTCACGAAGTTTCGTCTTGTAAAATTGTAGAGAG 859
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 779 AGGAGATGTGAATGATGGAGTATGTCTTCACAAAGTTTCGTCTTGTAAAATTGTAGAGAC 838
Query 860 CTTAGAAATGTCTGGTTGTGCTGATGCTACTGACTCCATATCTTCTGTTAAAGATGGAGA 919
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 839 CTTAGAAATGTCTGGTTGTGCTGATGCTACTGACTCCATATCTACTGTTAGAGATGGAGA 898
Query 920 AGCCCC-AATAGTGTCTCCAAACTCTTCTCAGAAGGATGTCGGCACTCTTATATCCTTGA 978
|||||| || ||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 899 AGCCCCGAA-AGTGTCTCCAAACTCTTCTCAGAAGGAAGTCGGCACTCTTGTATCCTTGA 957
Query 979 AAACATCTCCTCCGAGGGAACATGAAAATGACAGAAAGCTGGAGATTAGCGAAACAGAGG 1038
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TAACATCTCCTCCGAGGGAACATGAAAATGACAGAAAGCTGGAGATTAGCGAAACAGAGG 1017
Query 1039 CAAGGAAGGAAGAAAAAGAGAGCTGTGAGAATATGGAGGTTTCTGCATCTCCTTTGTGCG 1098
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1018 CGAGGAAGGAAGAAAAAGAGAGCTGTGAGAATATGGAGGTTTCGGCATCTCCTTTGTGCG 1077
Query 1099 AAGAAACTCCAGTTTTAGCACTGAGTAAAAATCGGTGCATCAAGTACACGTTCAAGAGGA 1158
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1078 AAGAAACTCCAGTTTTAGCACTTAGTAAAAATCGGTGTATCAAGTACACGTTCAAGAGGA 1137
Query 1159 AGAGAAAGAAGGAGGTCTTAAGTAA---TCTTGAAGGAGATTCCTCGTTTGAGGAGAGTA 1215
|||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
Sbjct 1138 AGAGAAAGAAGGAGGTGTTAAGCAACAATCTTGAAGGAGATTCCTCGTTTGAGGAGAGCA 1197
Query 1216 GAAACATGAAACAGAAGACTGTTGAGAAAGACGATGGTTACTTGGAGTCTCTGAAGCCTA 1275
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GAAACATGAAACAGAAGACTGGTGAGAAAGACGATGGTTACTTGGAGTCTCTGAAGCCTA 1257
Query 1276 GCTTTACCAGTGAATCATCTAGAGATGTAGTCTATGCTTAGCACATGTGGCTTGGAAGGT 1335
|||| ||||||||||||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 1258 GCTTCACCAGTGAATCATCTCGGGATGTAGTCTATGCTTAGCACAGGTGGCTTGGAAGGT 1317
Query 1336 TAGTAAATATCGACATACATCTAATTTGCTATATCATATTAAGTTTATTATGTTTCCTTC 1395
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1318 TAGTAAATATCAACATACATCTAATTTGCTATATCATATTAAGTTTCTTATGTTTCCTTC 1377
Query 1396 TTGCCTTTAAACTTGAAAGTGTATGGTCTAAAAACTGATATCAGTAGCAGTGCCCTTTTG 1455
||||| | ||| | | | || | ||||||||||| ||||| ||| ||||||||||||
Sbjct 1378 TTGCCGTGAAAGT--AT--T-TA-G-TCTAAAAACTGGTATCACTAGTAGTGCCCTTTTG 1430
Query 1456 TTGCATTATGGTTTTGGGTGTAAACTCTTGTCCATTGTGATGGGTTTATATATATAT--- 1512
||||||| | | ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1431 TTGCATT-T--T---GGGTGTAAACTCTTGTCGATTGTGATGGGTTTATATATATATATA 1484
Query 1513 ---GATGTCCAAGATTCTGAATGTT-CTATGTTTCTTTATTGTATTTTAATGGGCACAGC 1568
||||||||||||||||| | || ||||||||||||| |||||||| ||||||||||
Sbjct 1485 TATGATGTCCAAGATTCTGACTTTTTCTATGTTTCTTTA--GTATTTTACTGGGCACAGC 1542
Query 1569 TTGTACCATTCTCGTAGAATAAAGATTTGC 1598
||||||||||||||||||| ||||||||||
Sbjct 1543 TTGTACCATTCTCGTAGAAGAAAGATTTGC 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5