BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G74870.1 Length=1223 Score E Sequences producing significant alignments: (Bits) Value Ahg476623 jgi|Araly1|476623|fgenesh2_kg.2__1753__AT1G74870.1 1315 0.0 > Ahg476623 jgi|Araly1|476623|fgenesh2_kg.2__1753__AT1G74870.1 Length=1209 Score = 1315 bits (712), Expect = 0.0 Identities = 1094/1262 (87%), Gaps = 92/1262 (7%) Strand=Plus/Plus Query 1 GAGCGAGAGACTGAGAAATAGAAGGAGCGTAGCAGAGCAGTTTCCGATTTTCATTTCTCT 60 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 1 GAGCGAGAGACTGAGAAATACAAGGAGCGTAGCAGAGCAGTTTCCGATTTCCATTTCTCT 60 Query 61 CTCTTAATCCAGATTTAAGTATTAGGGTTTTTTCTTCTATC-ATCGCCATTActctctct 119 |||||||||| |||||||||||||||| |||||||||| || | || ||||| |||| Sbjct 61 CTCTTAATCCGGATTTAAGTATTAGGGATTTTTCTTCTCTCTAGCGACATTA----CTCT 116 Query 120 ctctGTTTCGCTtgtgtgtgtgtgtTGCTCAAAGATTATCATCATCATGGTTGCTG---- 175 |||||| |||| |||||||| ||||||| |||| | | |||||||||||||||| Sbjct 117 CTCTGTGTCGC---TGTGTGTGCGTTGCTCGAAGA-T-T-ATCATCATGGTTGCTGATTC 170 Query 176 --TCACAGACTCTGAACTCTTTCATGGCTCTCCGATTTCAACAGATTTCTCCAAGAAACG 233 ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 171 AATCACAGACTCTGAGCTCTTTCATGGCTCTCCGATTTCAAGAGATTTCGCCAAGAAACG 230 Query 234 CAAGGCGAATTGGTTTTGTAAGCTGAAGCAGTGGAAGATTGATGCTCGTCGCAAACAATG 293 ||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct 231 CAAGGCGAATTGGTTTTGTAAACTAAAGCAGTGGAAGATTGATGCTCGTCGCAAGCAATG 290 Query 294 GATTTCTCAATGGAAAAAAGCAAATGTAGATGAAGAAGA-AATTGGACGTAGATTGAGAT 352 ||||| ||||||||||||||||||| | | |||||| || ||| || |||||| ||| || Sbjct 291 GATTTATCAATGGAAAAAAGCAAATCTTGGTGAAGAGGATAATGGG-CGTAGACTGAAAT 349 Query 353 CTTTGTTAGAGAAACTGACTGATCAAAAAGCTTGGAGgattgattatgatgatgatgagg 412 ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | | Sbjct 350 CTTTGCTAGAGAAACTTACTGATCAAAAAGCTTGGAGGATTGATTATGATGATGC-G-G- 406 Query 413 atgatgagattgatCTTGAAAGGACATCATCATTTGCTAGTAGTCCCACGAGTGTTCTCA 472 ||||||| | ||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 407 ATGATGA--T----CTTGAAAGGACATCATCATCTGCTAGTAGCCCCACGAGTGTTCTCA 460 Query 473 AGAGGAAAGATTCTGTTAGTGGTGATTGCTTTTGTTGTTCTAAGCAGATGACTGAGGAAG 532 |||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| Sbjct 461 AGAGCAAAGATTCTGTTACTGGCGATTGCTTCTGTTGTTCTAAGCAGATGACTGAGGAAG 520 Query 533 A---GGAAGAAGTTTTTGACGATGCTTATGATAACTGGGATGGGTTTAAAGATGCGTTAA 589 | |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 521 ATCAGGAAGAAGTTTTCGACGATGCTTATGATAACTGGGATGGGTTTAGAGATGCGTTAA 580 Query 590 ACTCCTTTGAGAATGATAACAACGAAAGCTCTCGACTTGTGACAGAAGATTTTGAGCAAG 649 |||||||||| || | | ||||| ||||||||| ||| |||||||| ||||||| Sbjct 581 ACTCCTTTGACAA------C--C-AAAGCCCTCGACTTGAGACTGAAGATTTAGAGCAAG 631 Query 650 AAGAAGAAGATCTGATTCCAGATACAAGCCAGAGGATGAACAAGTGCAAGC-A--AGAAG 706 ||||||| || ||||||||||||||||||||||| ||| |||| | | | | ||||| Sbjct 632 AAGAAGA---TCCGATTCCAGATACAAGCCAGAGGAGGAAGAAGT-CTACCCATGAGAAG 687 Query 707 CTGCACC-TG--GA-AA---------T-CA---G-A--C--GACGATTCACAGAAACAGT 744 || | || || || | || | | | ||||||||||||||||||| Sbjct 688 CTTTTTCATGAAGACAAGAAAGAAGCTTCACCTGCAAACACGACGATTCACAGAAACAGT 747 Query 745 AATAAGAAGAAGAGGTCTAACTCTGAGAAGCAAAGAGGTGATGGTGATGAAGAATGTCCT 804 || |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 748 AAAAAGAAGAAGAGGTCTAACTCTGAGAAGCAACGAGGTGATGATGATGAAGAATGTCCT 807 Query 805 ATTTGCTCTGAGTTGATGGATGCAACGGATCTAGAATTCGAACCATGTACTTGTGGGTTT 864 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 808 ATTTGCTCTGAGTTGATGGATGCAACGGATCTAGAATTCGAACCATGTCCTTGTGGGTTT 867 Query 865 CGGATTTGTCTCTTTTGCCATAACAAGATCAGTGAAAACGAAGCACGTTGTCCAGCTTGC 924 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 868 CGGATTTGTCTCTTTTGCCATAAGAAGATCAGTGAAAACGAAGCACGTTGTCCAGCTTGC 927 Query 925 AGGAAGGATTATAAAAAGACGAGTaaaaa-aaGTGGAGAAGTAGGTTATC-AGCAACGTG 982 |||||||||||| ||||||||| | || |||||| ||||||| || ||||||||| Sbjct 928 AGGAAGGATTATGTTCGGACGAGTAATAGTAA-TGGAGAGGTAGGTT-TCCAGCAACGTG 985 Query 983 GTCGTGGCACTATTCCCTTGTCTCCGTCGTTTAGAGGACTTGACAGAGCTTAAGAGAGAA 1042 || ||| ||| |||| |||||||||||| |||||||||||||||||||||||||| ||| Sbjct 986 GTGGTGCCACAATTCGCTTGTCTCCGTCTTTTAGAGGACTTGACAGAGCTTAAGATAGA- 1044 Query 1043 AGAAAGAAGTTCCAAAAGTTTCATGAAACtttttttCTAGTTTTGT-CCTTAGTTTCATC 1101 |||||| ||| || | | |||||||||| ||| |||| | |||||||||| || Sbjct 1045 -GAAAGA-GTTTCA----T---A--AAACTTTTTT-CTACTTTTTTGCCTTAGTTTC-TC 1091 Query 1102 AGGAACAAGAATTTTGTGGTTTTGCTTAATTAGATTGTTGTCATCTCGGCAATAAATTTT 1161 || || ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1092 AGTTTCATCAATTTTGTGGTTTTGCTTA----GATTGTTGTCATCTCGGCAATAAATTTT 1147 Query 1162 CATTCATGTTTGTGAATCATATAATACACATAAACCAATATTAGTCTTTTATTCGATACA 1221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1148 CATTCATGTTTGTGAATCATATAATACACATAAACCAATATTAGTCTTTTATTCGATACA 1207 Query 1222 TC 1223 || Sbjct 1208 TC 1209 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45671254566 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5