BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74870.1
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476623 jgi|Araly1|476623|fgenesh2_kg.2__1753__AT1G74870.1 1315 0.0
> Ahg476623 jgi|Araly1|476623|fgenesh2_kg.2__1753__AT1G74870.1
Length=1209
Score = 1315 bits (712), Expect = 0.0
Identities = 1094/1262 (87%), Gaps = 92/1262 (7%)
Strand=Plus/Plus
Query 1 GAGCGAGAGACTGAGAAATAGAAGGAGCGTAGCAGAGCAGTTTCCGATTTTCATTTCTCT 60
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1 GAGCGAGAGACTGAGAAATACAAGGAGCGTAGCAGAGCAGTTTCCGATTTCCATTTCTCT 60
Query 61 CTCTTAATCCAGATTTAAGTATTAGGGTTTTTTCTTCTATC-ATCGCCATTActctctct 119
|||||||||| |||||||||||||||| |||||||||| || | || ||||| ||||
Sbjct 61 CTCTTAATCCGGATTTAAGTATTAGGGATTTTTCTTCTCTCTAGCGACATTA----CTCT 116
Query 120 ctctGTTTCGCTtgtgtgtgtgtgtTGCTCAAAGATTATCATCATCATGGTTGCTG---- 175
|||||| |||| |||||||| ||||||| |||| | | ||||||||||||||||
Sbjct 117 CTCTGTGTCGC---TGTGTGTGCGTTGCTCGAAGA-T-T-ATCATCATGGTTGCTGATTC 170
Query 176 --TCACAGACTCTGAACTCTTTCATGGCTCTCCGATTTCAACAGATTTCTCCAAGAAACG 233
||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 171 AATCACAGACTCTGAGCTCTTTCATGGCTCTCCGATTTCAAGAGATTTCGCCAAGAAACG 230
Query 234 CAAGGCGAATTGGTTTTGTAAGCTGAAGCAGTGGAAGATTGATGCTCGTCGCAAACAATG 293
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 231 CAAGGCGAATTGGTTTTGTAAACTAAAGCAGTGGAAGATTGATGCTCGTCGCAAGCAATG 290
Query 294 GATTTCTCAATGGAAAAAAGCAAATGTAGATGAAGAAGA-AATTGGACGTAGATTGAGAT 352
||||| ||||||||||||||||||| | | |||||| || ||| || |||||| ||| ||
Sbjct 291 GATTTATCAATGGAAAAAAGCAAATCTTGGTGAAGAGGATAATGGG-CGTAGACTGAAAT 349
Query 353 CTTTGTTAGAGAAACTGACTGATCAAAAAGCTTGGAGgattgattatgatgatgatgagg 412
||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 350 CTTTGCTAGAGAAACTTACTGATCAAAAAGCTTGGAGGATTGATTATGATGATGC-G-G- 406
Query 413 atgatgagattgatCTTGAAAGGACATCATCATTTGCTAGTAGTCCCACGAGTGTTCTCA 472
||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 407 ATGATGA--T----CTTGAAAGGACATCATCATCTGCTAGTAGCCCCACGAGTGTTCTCA 460
Query 473 AGAGGAAAGATTCTGTTAGTGGTGATTGCTTTTGTTGTTCTAAGCAGATGACTGAGGAAG 532
|||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||
Sbjct 461 AGAGCAAAGATTCTGTTACTGGCGATTGCTTCTGTTGTTCTAAGCAGATGACTGAGGAAG 520
Query 533 A---GGAAGAAGTTTTTGACGATGCTTATGATAACTGGGATGGGTTTAAAGATGCGTTAA 589
| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 521 ATCAGGAAGAAGTTTTCGACGATGCTTATGATAACTGGGATGGGTTTAGAGATGCGTTAA 580
Query 590 ACTCCTTTGAGAATGATAACAACGAAAGCTCTCGACTTGTGACAGAAGATTTTGAGCAAG 649
|||||||||| || | | ||||| ||||||||| ||| |||||||| |||||||
Sbjct 581 ACTCCTTTGACAA------C--C-AAAGCCCTCGACTTGAGACTGAAGATTTAGAGCAAG 631
Query 650 AAGAAGAAGATCTGATTCCAGATACAAGCCAGAGGATGAACAAGTGCAAGC-A--AGAAG 706
||||||| || ||||||||||||||||||||||| ||| |||| | | | | |||||
Sbjct 632 AAGAAGA---TCCGATTCCAGATACAAGCCAGAGGAGGAAGAAGT-CTACCCATGAGAAG 687
Query 707 CTGCACC-TG--GA-AA---------T-CA---G-A--C--GACGATTCACAGAAACAGT 744
|| | || || || | || | | | |||||||||||||||||||
Sbjct 688 CTTTTTCATGAAGACAAGAAAGAAGCTTCACCTGCAAACACGACGATTCACAGAAACAGT 747
Query 745 AATAAGAAGAAGAGGTCTAACTCTGAGAAGCAAAGAGGTGATGGTGATGAAGAATGTCCT 804
|| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 748 AAAAAGAAGAAGAGGTCTAACTCTGAGAAGCAACGAGGTGATGATGATGAAGAATGTCCT 807
Query 805 ATTTGCTCTGAGTTGATGGATGCAACGGATCTAGAATTCGAACCATGTACTTGTGGGTTT 864
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 808 ATTTGCTCTGAGTTGATGGATGCAACGGATCTAGAATTCGAACCATGTCCTTGTGGGTTT 867
Query 865 CGGATTTGTCTCTTTTGCCATAACAAGATCAGTGAAAACGAAGCACGTTGTCCAGCTTGC 924
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 868 CGGATTTGTCTCTTTTGCCATAAGAAGATCAGTGAAAACGAAGCACGTTGTCCAGCTTGC 927
Query 925 AGGAAGGATTATAAAAAGACGAGTaaaaa-aaGTGGAGAAGTAGGTTATC-AGCAACGTG 982
|||||||||||| ||||||||| | || |||||| ||||||| || |||||||||
Sbjct 928 AGGAAGGATTATGTTCGGACGAGTAATAGTAA-TGGAGAGGTAGGTT-TCCAGCAACGTG 985
Query 983 GTCGTGGCACTATTCCCTTGTCTCCGTCGTTTAGAGGACTTGACAGAGCTTAAGAGAGAA 1042
|| ||| ||| |||| |||||||||||| |||||||||||||||||||||||||| |||
Sbjct 986 GTGGTGCCACAATTCGCTTGTCTCCGTCTTTTAGAGGACTTGACAGAGCTTAAGATAGA- 1044
Query 1043 AGAAAGAAGTTCCAAAAGTTTCATGAAACtttttttCTAGTTTTGT-CCTTAGTTTCATC 1101
|||||| ||| || | | |||||||||| ||| |||| | |||||||||| ||
Sbjct 1045 -GAAAGA-GTTTCA----T---A--AAACTTTTTT-CTACTTTTTTGCCTTAGTTTC-TC 1091
Query 1102 AGGAACAAGAATTTTGTGGTTTTGCTTAATTAGATTGTTGTCATCTCGGCAATAAATTTT 1161
|| || ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1092 AGTTTCATCAATTTTGTGGTTTTGCTTA----GATTGTTGTCATCTCGGCAATAAATTTT 1147
Query 1162 CATTCATGTTTGTGAATCATATAATACACATAAACCAATATTAGTCTTTTATTCGATACA 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 CATTCATGTTTGTGAATCATATAATACACATAAACCAATATTAGTCTTTTATTCGATACA 1207
Query 1222 TC 1223
||
Sbjct 1208 TC 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45671254566
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5