BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74875.1
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909109 jgi|Araly1|909109|Al_scaffold_0002_2190 741 0.0
> Ahg909109 jgi|Araly1|909109|Al_scaffold_0002_2190
Length=870
Score = 741 bits (401), Expect = 0.0
Identities = 580/663 (87%), Gaps = 26/663 (4%)
Strand=Plus/Plus
Query 86 CTTCATCAT-TATCCGAGTTTCGCAATCTTCAATTAGTTTCGAAATCGTTTAAACGTATC 144
||||||| | |||||||| || ||||||||| ||||||||||||||| ||||||||||||
Sbjct 218 CTTCATC-TCTATCCGAGATTAGCAATCTTCGATTAGTTTCGAAATCTTTTAAACGTATC 276
Query 145 AGCAACGATCGATACATTCTGCAG-CGGCTTTCCCTCAATAAAATCCCTCTTTTACCATG 203
||||||||||||||| |||||| | ||||||||||||||| ||||||||||||| |||||
Sbjct 277 AGCAACGATCGATACGTTCTGC-GCCGGCTTTCCCTCAATGAAATCCCTCTTTTTCCATG 335
Query 204 G---CGCAACCGTAAAAAATTTCACAATTTTTTCAAAAGATGTCGCAAGAGTGGAAACCT 260
| ||||||||| |||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 336 GTTTCGCAACCGTGGAAAATTTCACAATTTTATCAAAAGATGTCGCAAGAATGGAAACCC 395
Query 261 AGAGGCTATATACCGTAAAGGACTTGTCGATTACTTTCATCGGGATAGT-CATGAACGTC 319
||||| ||||||||||||||||||||||||||||||||||| ||||| | | |||| |
Sbjct 396 CGAGGCAATATACCGTAAAGGACTTGTCGATTACTTTCATCGAAATAGTTC-TAAACGCC 454
Query 320 AACGAGACAGAGGACTCAAACATATAGCAAAAACTGCAAACAATGGAAATCAAGAAGCAC 379
||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 455 AACGAGACAAAGGACTCAAACATATAGCAAAAGTTGCAAACAAGGGAAATCAAGAAGCAC 514
Query 380 AATATGTTTATGGGTTGATCCTAATTTGTCTTGGTGGCAAAACAAAACAAAATGGTTTCA 439
||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 515 AATATGTTTATGGATTGATCCTAATTTGTCTTGGTGGCGAAACAAAACAAAAGGGTTTCA 574
Query 440 AGATCTTGTCTTCTCTACGAAAACCTTTGATGTTGTCAAATACGA-TCAAGGAGATGGAA 498
|||||||||||||| || ||||||||||||||| ||| ||| | || |||||||||||
Sbjct 575 AGATCTTGTCTTCTTTAAGAAAACCTTTGATGT---CAAGTAC-ACTCGAGGAGATGGAA 630
Query 499 AAACATCGGACACATATCAGAAAT-A--TGTGGTGGTGGGGCGAACCGATGATGAGACAC 555
|||||||||| | | ||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 631 AAACATCGGAAAAAGATCAGAAATGAGATGTGGTGGTGCGGCGAACCGATGATGAGACAT 690
Query 556 CTACAAAA-AAGCTATGTTCGTG-AGAACTGCAATTGCGATGGTCGAACCGAGAT---CT 610
|| ||||| ||| |||||||||| | || |||||||| ||||||||||| || || ||
Sbjct 691 CT-CAAAAGAAGATATGTTCGTGTA-AATTGCAATTGTGATGGTCGAACAGATATTTTCT 748
Query 611 TTCCCAACTATTGTT-TTCGTCATCGTTTTGGTGAGGACGACGACATGCTTACTTCTTCC 669
|| || || || || | |||||| ||||||| || |||||||| |||||| |||
Sbjct 749 TTGTAAAGAATAGTGGTTGGG-ATCGTTATGGTGAGCACAACGACATGATTACTTGTTCT 807
Query 670 GCTTGTGAGATATGTTTGTGCCATCATGAAGTCAAACTTTTCTTTGCTAATATTAAGGAA 729
||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 808 GCTTGTGAGATTTGTTTGTGGCATCATGAAGTCAAACTTTTCTTTGCTAATATTGAGGAA 867
Query 730 TGA 732
|||
Sbjct 868 TGA 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26952902319
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5