BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74880.1
Length=788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476624 jgi|Araly1|476624|fgenesh2_kg.2__1754__AT1G74880.1 894 0.0
> Ahg476624 jgi|Araly1|476624|fgenesh2_kg.2__1754__AT1G74880.1
Length=618
Score = 894 bits (484), Expect = 0.0
Identities = 578/623 (93%), Gaps = 8/623 (1%)
Strand=Plus/Plus
Query 1 GCGGTCTTATCCCGAAACTCCAAGAACACATAAttttttttCTTGGTGGTCTCTCCAATG 60
|||||||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 1 GCGGTCTTATCCCGAAACTCCAAGAACACAGAA--AAGTTTCGTGGTGGTCTCTCCAATG 58
Query 61 GCTTTCTCTGCGACTGTGTCTCAGCTTTCTTCTCTTTCAACCATCTCCTCTTCATTACCA 120
|||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 59 GCTTTCTCAGCGACTCTGTCTCAGCTTTCTTCTCTTTCTACCATCTCCTCTTCATTACCA 118
Query 121 ATTTCTTCTAGAAGACTCCCTCATCGATCTCTTCCTCAATTCACAGTCAAAGCAGAAGCA 180
|| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 119 CTTCCTTCTAGAAGATTCCCTCATCGATCTCTTCCTCAGTTCACAGTCAAAGCAGAGGTA 178
Query 181 GAGAAAGAGAAACAGAGCACACAGGGCAAGTCTGATGGGGAAGCATCACCAGCTGCAACC 240
||||||||||| ||||||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 179 GAGAAAGAGAAGCAGAGCACACAGGCCAAATCTGAAGGGGAAGCATCACCAGCTGCAACC 238
Query 241 AAAACCCCTAAAACCCTCCCCAAGAAACCGGTTTACTCGATGAAGAAGGGCCAAATCGTT 300
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 AAAACCCCTAAAACTCTTCCCAAGAAACCGGTTTACTCGATGAAGAAGGGCCAAATAGTT 298
Query 301 CGTGTGGAAAAAGAGAAGTACCTCAACAGCATCAATTACTTATCAGTTGGACATCCTCCT 360
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 299 CGTGTGGACAAAGAGAAGTACCTTAACAGCATCAATTACTTATCAGTTGGACATCCTCCT 358
Query 361 TTCTACAAAGGACTTGATTACATATACGAAGATCGCGGCGAGGTCTTGGACCTTCGTGTC 420
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 359 TTCTACAAAGGACTTGATTACATTTACGAAGATCGCGGGGAGGTCTTGGACCTTCGTGTC 418
Query 421 TTTGAGACAGGAGAGTATGCACTTGTTGGATGGGTTGGTATCCCCACCGCACCAGCTTGG 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 419 TTTGAGACAGGAGAGTATGCACTTGTTGGATGGGTTGGCATCCCCACCGCACCAGCTTGG 478
Query 481 CTCCCAACAGATATGCTCATCAAGTGTGAGAAACTTGTTTACGAGCGAATGTAGAGTCAA 540
|| ||||||||||||||||||||| |||||||||||||||| || ||||||||||||| |
Sbjct 479 CTACCAACAGATATGCTCATCAAGAGTGAGAAACTTGTTTATGAACGAATGTAGAGTCCA 538
Query 541 GAAGG-TTCCAAGAAGAATCCTTTGGAATGCAACTGATATACCAAGGATTGTGT-T-AAG 597
| || |||||||||||||||||||||| ||||| |||| |||||| |||||| | |||
Sbjct 539 TA-GGCTTCCAAGAAGAATCCTTTGGAAAGCAACCGATA--CCAAGGGTTGTGTGTTAAG 595
Query 598 CTGAGATGAACGATAACAATGGC 620
|||||||||| ||||| ||||||
Sbjct 596 CTGAGATGAATGATAAAAATGGC 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29087785671
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5