BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74890.1
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316423 jgi|Araly1|316423|fgenesh1_pm.C_scaffold_2001456 961 0.0
> Ahg316423 jgi|Araly1|316423|fgenesh1_pm.C_scaffold_2001456
Length=621
Score = 961 bits (520), Expect = 0.0
Identities = 587/619 (95%), Gaps = 6/619 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCTCAGAGA-TTTAtcttcttctt-tatcttcttcttcttcACCGGAGTTACATG 58
||||| |||||||| || ||||||||| | ||||||||||||||||| ||||||||||
Sbjct 1 ATGGCACTCAGAGAGATT-GCTTCTTCTTCT-TCTTCTTCTTCTTCACCTGAGTTACATG 58
Query 59 TTCTTGCCGTTGATGATAGTTTCGTGGATCGTAAAGTTATTGAGAGATTGCTTAAGATCT 118
|||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 59 TTCTCGCTGTTGATGATAGTTTCGTTGATCGTAAGGTTATTGAGAGATTGCTTAAGATCT 118
Query 119 CTGCTTGTAAAGTGACGACTGTTGAGAGTGGGACTAGGGCTCTGCAGTATCTTGGTTTAG 178
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 119 CTGCTTGTAAAGTGACGACTGTTGAGAGTGGGACTAGGGCTCTTCAGTATCTTGGTTTAG 178
Query 179 ATGGAGACAATGGATCTTCTGGTCTTAAGGATTTGAAAGTGAACTTGATAGTGACGGATT 238
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 179 ATGGAGACAATGGATCTTCTGGTCTTAAGGATTTGAAGGTGAACTTGATAGTGACAGATT 238
Query 239 ATTCAATGCCGGGACTAACAGGATATGAACTCCTCAAGAAGATCAAAGAGTCTTCAGCAC 298
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ACTCAATGCCGGGATTAACAGGATATGAACTCCTCAAGAAGATCAAAGAGTCTTCAGCAT 298
Query 299 TCAGAGAAATCCCAGTAGTGATAATGTCTTCTGAGAACATACAACCTCGTATAGAACAAT 358
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 299 TCAGAGAAATCCCAGTAGTTATAATGTCGTCCGAGAACATACAACCTCGTATAGAACAAT 358
Query 359 GTATGATAGAAGGAGCAGAGGAGTTTT-TGCTAAAACCGGTGAAATTAGCTGATGTGAAG 417
|||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 359 GTATGATAGAAGGAGCAGAGGA-TTTCCTGCTAAAACCGGTGAAATTAGCAGATGTGAAG 417
Query 418 CGTTTAAAAGAACTTATAATGAGAGGTGGTGAAGCTGAAGAAGGaaaaaccaaaaaaCTT 477
|| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 418 CGCTTAAAAGAACTTATTATGAGAGGTGGTGAAGCTGGAGAAGGAAAAACCAAAAAACTT 477
Query 478 AGTCCTAAGAGAATCCTACAAAACGACATTGATtcatctccatcatcatcatcaacatct 537
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 AGTCCTAAGAGAATCTTACAAAACGACATTGATTCATCTCCATCATCTTCATCAACATCT 537
Query 538 tcatcatcGTCGTCTCATGATGTTTCCTCCCTTGATGACGACACTCCATCTTCCAAGAGG 597
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 538 TCATCATCGTCGTCTCATGATGTTTCCTCTCTTGATGACGACATTCCATCTTCCAAGAGG 597
Query 598 ATCAAATTAGAGTCTAGGG 616
|||||||||||||||||||
Sbjct 598 ATCAAATTAGAGTCTAGGG 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22721258532
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5