BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74900.1
Length=1648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909112 jgi|Araly1|909112|Al_scaffold_0002_2193 2089 0.0
Ahg926871 jgi|Araly1|926871|scaffold_202432.1 150 3e-35
> Ahg909112 jgi|Araly1|909112|Al_scaffold_0002_2193
Length=1356
Score = 2089 bits (1131), Expect = 0.0
Identities = 1286/1362 (94%), Gaps = 6/1362 (0%)
Strand=Plus/Plus
Query 1 ATGAAACGTCTTTTTAGCAAATCGCTATGTACTTCGGCCGCCGGAGCCAATCTCAAACCA 60
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1 ATGAAACGTCTTTTAAGCAAATCGCTATGTACATCGGCCGCCGGAGCCAATCTAAAACCA 60
Query 61 CCGCCGGCAGATTCCGCCGCCATAGCTAAGCTTATCCTCTCTTCTCCGAACACAACTCAC 120
|||||||||||| ||||||||||||||||||| |||||||||| | | || ||| | |
Sbjct 61 CCGCCGGCAGATCCCGCCGCCATAGCTAAGCTCATCCTCTCTT-TTC--AC-CAA-AC-C 114
Query 121 CAAGACGATCAATTTCTACTCTCCACCAAAACAACCCCATGGACCCCAAATCTCGTGAAC 180
| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 115 CTAGACGATCAATTTATTCTCTCCACCAAAACAACCCCATGGACCCCAAATCTCGTCAAC 174
Query 181 TCTGTTCTCAAGCGACTCTGGAACCACGGCCCTAAAGCTCTCCAATTCTTCCACTTCCTC 240
|||||||||||||| |||||||| ||||| || ||||| |||||||||||||||||||||
Sbjct 175 TCTGTTCTCAAGCGCCTCTGGAATCACGGTCCAAAAGCCCTCCAATTCTTCCACTTCCTC 234
Query 241 GACAATCACCACCGCGAATATGTCCACGACGCTTCCTCCTTCGATCTCGCAATCGACATT 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 235 GACAATCACCACCGCGAATATGTCCACGACGCTTCCTCCTTCGACCTCGCAATCGACATT 294
Query 301 GCCGCCCGTCTTCACCTCCACCCCACCGTCTGGTCACTCATTCACCGTATGCGCTCTCTC 360
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 295 GCCGCCCGTCTTCACATCCACCCCACCGTCTGGTCCCTCATTCACCGTATGCGCTCTCTC 354
Query 361 CGCATCGGTCCTTCTCCCAAAACCTTCGCAATCGTCGCCGAGAGGTACGCATCCGCTGGG 420
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||
Sbjct 355 CGCATCGGTCCTTCTCCCAAGACCTTCGCAATCGTCGCCGAGAGGTACGCTTCCTCCGGG 414
Query 421 AAGCCCGATAAAGCGGTTAAGCTGTTTCTGAATATGCACGAACATGGTTGTTTTCAAGAT 480
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 415 AAACCCGATAAAGCGGTAAAGCTGTTTCTGAATATGCACGAACATGGTTGTTTTCAGGAT 474
Query 481 TTAGCTTCTTTCAATACGATTCTCGATGTGTTGTGTAAATCTAAACGCGTAGAGAAAGCT 540
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 475 TTGGCTTCTTTCAATACGATTCTCGATGTGTTGTGTAAATCTAAACGCGTTGAGAAAGCT 534
Query 541 TATGAGTTGTTTAGAGCTCTTAGGGGAAGATTTAGTGTTGATACAGTTACTTACAATGTG 600
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 535 TATGAGTTGTTTAGGGCTCTTAGGGGGAGATTTAGTGTTGATACAGTTACTTACAATGTG 594
Query 601 ATTCTTAACGGTTGGTGTTTGATTAAAAGGACGCCTAAGGCTTTAGAAGTTTTGAAAGAG 660
||| |||| |||||||||||||| ||| |||||||||||||||| || ||||||||||||
Sbjct 595 ATTGTTAATGGTTGGTGTTTGATCAAACGGACGCCTAAGGCTTTGGAGGTTTTGAAAGAG 654
Query 661 ATGGTTGAGAGAGGGATAAACCCTAATTTGACTACTTATAACACAATGCTCAAAGGTTTT 720
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 655 ATGGTTGATAGAGGGATAAACCCTAATTTGACTACTTATAACACAATGCTCCAAGGTTTT 714
Query 721 TTCAGAGCTGGGCAGATTAGACATGCTTGGGAATTCTTCTTGGAGATGAAGAAACGGGAT 780
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 715 TTCAGAGCTGGGCAGATTAGACAGGCTTGGGAATTCTTCTTGGAGATGAAGAAGCGGGAT 774
Query 781 TGTGAAATAGATGTTGTCACTTATACTACTGTGGTTCACGGGTTTGGTGTTGCGGGGGAG 840
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TGTGAAATCGATGTTGTTACTTATACTACTGTGGTTCACGGGTTTGGTGTTGCGGGGGAG 834
Query 841 ATAAAGCGGGCGAGGAATGTTTTCGATGAGATGATTAGAGAAGGTGTGCTTCCTTCTGTT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ATAAAGCGGGCGAGGAATGTTTTCGATGAGATGATTAGAGAAGGTGTGCTTCCTTCTGTT 894
Query 901 GCGACGTACAATGCTATGATTCAAGTTTTGTGTAAGAAAGATAATGTGGAGAATGCGGTT 960
||||| ||||||||| | ||||||||||||||||||||||||| || || |||||||||
Sbjct 895 GCGACATACAATGCTTTCATTCAAGTTTTGTGTAAGAAAGATAGCGTAGAAAATGCGGTT 954
Query 961 GTGATGTTTGAGGAAATGGTGAGGAGAGGTTATGAGCCGAATGTGACGACTTATAATGTG 1020
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 955 GTCATGTTTGAGGAAATGGTGAGGAAAGGTTATGAGCCGAATGTGACGACTTATAATGTG 1014
Query 1021 TTGATAAGAGGGTTGTTTCACGCTGGAGAGTTTAGTCGTGGAGAGGAGTTGATGCAGAGA 1080
||||| |||||||| |||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 1015 TTGATCAGAGGGTTATTTCACGCTGGAAAGTTCAGTCGCGGAGAGGAGTTGATGCAGAGA 1074
Query 1081 ATGGAGAATGAAGGCTGTGAACCAAACTTCCAGACATATAACATGATGATCCGTTATTAT 1140
||||| ||||||||||||||||||||||||||||| || || |||||||| || ||||||
Sbjct 1075 ATGGAAAATGAAGGCTGTGAACCAAACTTCCAGACGTACAATATGATGATACGCTATTAT 1134
Query 1141 TCGGAATGCAGCGAGGTCGAGAAAGCGTTGGGTTTGTTTGAGAAAATGGGGAGTGGTGAT 1200
||||||||||||||||| |||||||| |||||||||||| |||| ||||||| |||||||
Sbjct 1135 TCGGAATGCAGCGAGGTTGAGAAAGCATTGGGTTTGTTTAAGAAGATGGGGACTGGTGAT 1194
Query 1201 TGCTTGCCAAATCTAGATACTTACAACATACTGATAAGTGGAATGTTTGTGAGAAAAAGA 1260
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1195 TGCTTGCCAAATCTAGATACTTACAACATACTGATTAGTGGAATGTTTGTGAGAAAAAGA 1254
Query 1261 TCAGAAGATATGGTGGTCGCTGGGAATCAAGCTTTTGCAAAGGAGATCTTGAGATTGCAG 1320
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1255 TCAGAAGATATGGTGGTCGCTGGGAATCAAGCTTTCGCAAAGGAGATCTTGAGATTGCAG 1314
Query 1321 AGTAAATCTGGTAGCCGGCTTCTCCGGAAGTTCAGGCTATGA 1362
||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1315 AGTAAATCTGGTAGCAGGCTTCTCCGGAAGTTCAGGCTATGA 1356
> Ahg926871 jgi|Araly1|926871|scaffold_202432.1
Length=1461
Score = 150 bits (81), Expect = 3e-35
Identities = 90/94 (96%), Gaps = 1/94 (1%)
Strand=Plus/Minus
Query 1556 TTACAGTAGCTGTG-TTGTGAGTATAGAAAATGGAATTGATACAATGTTGGAAAATTCTT 1614
|||||||||||||| |||||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct 1461 TTACAGTAGCTGTGATTGTGAGTATAGAAGATGAAATTGATACAAAGTTGGAAAATTCTT 1402
Query 1615 GGTGTAAATAAATGATACATGTGAATTAGTTCCC 1648
||||||||||||||||||||||||||||||||||
Sbjct 1401 GGTGTAAATAAATGATACATGTGAATTAGTTCCC 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61782377390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5