BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74910.1
Length=1969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926871 jgi|Araly1|926871|scaffold_202432.1 2444 0.0
> Ahg926871 jgi|Araly1|926871|scaffold_202432.1
Length=1461
Score = 2444 bits (1323), Expect = 0.0
Identities = 1418/1464 (97%), Gaps = 5/1464 (0%)
Strand=Plus/Plus
Query 293 AAAAGATCTGAGCTTTGAACATGGGGAGCTCAATGGAGGAGAAAGTGGTGGCTGTGATCA 352
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAAA-ATCTGAGCTTTGAAAATGGGGAGCTCAATGGAGGAGAAAGTGGTGGCTGTGATCA 60
Query 353 TGGTCGGTGGTCCAACCAAAGGCACTCGATTTCGGCCATTGTCGCTGAATATTCCAAAGC 412
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 61 TGGTCGGTGGTCCAACCAAAGGTACTCGGTTTCGGCCATTGTCGCTGAATATTCCAAAGC 120
Query 413 CTCTGTTTCCTATTGCGGGACAACCAATGGTGCATCATCCAATTTCAGCTTGTAAAAGAA 472
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 121 CTCTGTTTCCTATTGCGGGACAGCCAATGGTGCATCATCCTATTTCAGCTTGTAAAAGAA 180
Query 473 TTCCAAATTTAGCTCAAATATATCTTGTTGGCTTCTATGAGGAAAGGGAATTTGCACTTT 532
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCCAAATTTAGCACAAATATATCTTGTTGGCTTCTATGAGGAAAGGGAATTTGCACTTT 240
Query 533 ATGTTTCAGCCATCTCTAATGAACTTAAAGTTCCTGTTAGATATCTGCGAGAAGACAAAC 592
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 ATGTCTCAGCCATCTCTAATGAACTCAAAGTTCCTGTTAGATATCTGCGAGAAGACAAAC 300
Query 593 CACATGGTTCAGCTGGTGGGCTGTATCACTTTAGAAATCTTATTATGGAAGATAGTCCGT 652
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 301 CACATGGTTCAGCTGGTGGGCTCTATCACTTTAGAAATCTTATTATGGAAGATAGCCCGT 360
Query 653 CTCATATCTTCCTGCTTAACTGTGATGTTTGCTGCAGTTTCCCCTTGCCCAAAATGCTCG 712
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 361 CTCATATCTTCCTGCTTAACTGTGATGTTTGCTGCAGTTTCCCTTTGCCCGAAATGCTCG 420
Query 713 AGGCTCACAGGGGATATGGTGGAATTGGAACTCTTCTTGTGATCAAGGTCTCTCCTGAAT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGGCTCACAGGGGATATGGTGGAATTGGAACTCTTCTTGTGATCAAGGTCTCTCCTGAAT 480
Query 773 CAGCCAGCCAATTTGGAGAATTGGTTGCAGATCCAGTTACTAATGAGCTGCTTCATTACA 832
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 CAGCCAGCCAATTTGGAGAATTGGTAGCAGATCCAGTTACTAATGAGCTGCTTCATTACA 540
Query 833 CCGAGAAACCCGAAACTTTTGTCAGTGATCGAATTAACTGTGGTGTTTATGTATTTACAC 892
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 CCGAGAAACCCGAAACTTTTGTCAGTGATCGTATTAACTGTGGTGTTTATGTATTTACAC 600
Query 893 CTGAAATTTTTAATGCCATAGGAGATGTTTCTACTCAGAGGAAAGATAGAGCAACTCTAA 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTGAAATTTTTAATGCCATAGGAGATGTTTCTACTCAGAGGAAAGATAGAGCAACTCTAA 660
Query 953 AACGTGTTTCCAGCTTCGAAGCTCTTCAACCGGCAACAAGGATCCCGACAGATTTTGTAA 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AACGTGTTTCCAGCTTCGAAGCTCTTCAACCGGCAACAAGGATCCCGACAGATTTTGTAA 720
Query 1013 GACTGGATCAAGACATCCTTTCACCTCTAGCTGGGAAGAAACGGCTATATACTTATGAGA 1072
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 GACTGGATCAAGACATCCTTTCACCTCTAGCTGGGAAGAAACAGCTATATACTTATGAGA 780
Query 1073 CTATGGATTTCTGGGAGCAAATCAAATCTCCTGGGATGTCGTTGAGGTGTTCAGGACTCT 1132
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 781 CTATGGATTTCTGGGAGCAAATCAAATCTCCTGGAATGTCTTTGAGGTGTTCGGGACTCT 840
Query 1133 ATCTTTCCCAATTCCGCTTGACATCTCCCCAACTGTTGGCTAGTGGTGATGGAACAAGGA 1192
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 841 ATCTTTCCCAATTCCGCTTGACCTCTCCCCAACTGTTGGCTAGTGGTGATGGAACAAGGA 900
Query 1193 GTGCCATTGTGATTGGTGATGTTTACATACATCCTTCTGCAAAAGTTCACCCAACTGCAA 1252
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 901 GTGCCATTGTGATTGGTGATGTTTACATACATCCTTCTGCAAAAGTACACCCAACTGCAA 960
Query 1253 AGATTGGTCCCAACGTCTCAATCTCTGCAAATGCTCGTGTTGGACCGGGCGTCAGGCTTA 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGATTGGTCCCAACGTCTCAATCTCTGCAAATGCTCGTGTTGGACCGGGCGTCAGGCTTA 1020
Query 1313 TGAGCTGCATCATCCTTGACGATGTTGAGATCATGGAAAATGCAGTGGTGACTAACGCAA 1372
| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCAGCTGTATCATCCTTGATGACGTTGAGATCATGGAAAATGCAGTGGTGACTAACGCAA 1080
Query 1373 TTGTTGGGTGGAAATCTTCTATCGGGAGATGGTCCCGCGTCCAGGCTGAGGGAGTCTACA 1432
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1081 TTGTTGGGTGGAAATCTTCTATCGGGAGATGGTCCCGTGTCCAGGCTGAGGGAGTTTACA 1140
Query 1433 ATTCGAAACTCGGAGTTACAATTCTCGGAGACTCGGTTGCAGTTGAAGACGAGGTTGTGG 1492
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1141 ATTCCAAACTCGGAGTTACAATTCTCGGAGACTCGGTTGCAGTTGAAGATGAGGTTGTGG 1200
Query 1493 TGACCAGCAGTATTGTTCTTCCAAACAAGACACTGAACGTCAGTGTTCAAGACGAGATCA 1552
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TGACCAGCTGTATTGTTCTTCCAAACAAGACACTGAACGTCAGTGTTCAAGACGAGATCA 1260
Query 1553 TTTTGTAACTGAAAAACGGAAGTTGAAAAATGGAACCAACCCAGTGGGGAGCAGCCACAC 1612
|||||||| ||||||| |||| ||||||||||||||||||||||||||||| | ||||
Sbjct 1261 TTTTGTAATTGAAAAATGGAACATGAAAAATGGAACCAACCCAGTGGGGAGC--C-ACAC 1317
Query 1613 TATCTCCCTCTGATTCAATATCTACTGGAGAACCACATAAGCAAATATTTGGGAACTAAT 1672
||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||
Sbjct 1318 CATCTCTCTCTGATTCAATATCTACTGGAGAATCACAGAAGCATATATTTGGGAACTAAT 1377
Query 1673 TCACATGTATCATTTATTTACACCAAGAATTTTCCAACATTGTATCAATTCCATTTTCTA 1732
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 1378 TCACATGTATCATTTATTTACACCAAGAATTTTCCAACTTTGTATCAATTTCATCTTCTA 1437
Query 1733 TACTCACAA-CACAGCTACTGTAA 1755
||||||||| ||||||||||||||
Sbjct 1438 TACTCACAATCACAGCTACTGTAA 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74009346035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5