BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74920.1
Length=1843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926872 jgi|Araly1|926872|scaffold_202433.1 2673 0.0
Ahg937567 jgi|Araly1|937567|scaffold_501758.1 856 0.0
> Ahg926872 jgi|Araly1|926872|scaffold_202433.1
Length=1591
Score = 2673 bits (1447), Expect = 0.0
Identities = 1535/1579 (97%), Gaps = 0/1579 (0%)
Strand=Plus/Plus
Query 107 ACGAATCCACGATCCAGTGAGCAGCAGCAACTCCATCTCCGGAGCTCTAGATTCAGATAA 166
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACGAATCCACGATCCAGTGAGGAGCAGCAACTCCATCTCCGGAGCTCTAGATTCAGATAA 60
Query 167 GAACAATGGCGATTCCGATGCCTACTCGCCAGCTATTCATCGACGGCGAATGGAGAGAAC 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAACAATGGCGATTCCGATGCCTACTCGCCAGCTATTCATCGACGGCGAATGGAGAGAAC 120
Query 227 CCATCTTGAAGAAGCGAATCCCGATCGTTAATCCAGCTACTGAAGAGGTCATTGGTGATA 286
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 121 CCATCTTGAAGAAGCGAATCCCGATCGTGAATCCGGCTACTGAAGAGGTCATTGGTGATA 180
Query 287 TTCCTGCAGCTACAACGGAGGACGTGGATGTTGCTGTCAACGCTGCTCGAAGAGCATTAT 346
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 181 TTCCTGCAGCTACAACGGAGGACGTGGAGGTTGCAGTCAACGCTGCTCGAAGAGCATTTT 240
Query 347 CAAGGAATAAAGGGAAAGATTGGGCCAAAGCACCTGGAGCTGTTCGTGCTAAGTATTTAC 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 CAAGGAATAAAGGGAAAGATTGGGCCAAAGCACCTGGAGCTGTTCGTGCTAAGTTTTTAC 300
Query 407 GTGCTATTGCTGCTAAGGTAAATGAAAGAAAGACGGATCTGGCAAAGCTCGAGGCGCTTG 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGCTATTGCTGCTAAGGTAAATGAAAGAAAGACGGATCTGGCAAAGCTCGAGGCGCTTG 360
Query 467 ATTGTGGTAAACCATTGGATGAAGCAGTATGGGATATGGATGATGTTGCTGGATGTTTTG 526
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 ATTGTGGTAAACCATTGGATGAAGCAGTGTGGGATATGGATGATGTTGCTGGATGTTTTG 420
Query 527 AATTTTATGCTGACCTTGCTGAAGGATTAGATGCTAAGCAGAAAGCACCAGTCTCGCTTC 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATTTTATGCTGACCTTGCTGAAGGATTAGATGCTAAGCAGAAAGCACCAGTCTCGCTTC 480
Query 587 CCATGGAGAGTTTTAAGAGTTATGTTCTGAAGCAACCTCTCGGAGTTGTGGGACTTATTA 646
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 481 CCATGGAGAGTTTTAAGAGTTTTGTTCTGAAGCAACCTCTTGGAGTTGTGGGACTTATTA 540
Query 647 CACCATGGAATTACCCCCTTTTGATGGCTGTTTGGAAGGTGGCTCCTTCCCTTGCTGCAG 706
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 CACCATGGAATTACCCCCTTTTGATGGCTGTTTGGAAGGTGGCTCCTTCACTTGCTGCAG 600
Query 707 GGTGCACTGCGATTCTCAAGCCATCAGAGCTGGCATCAGTTACTTGTTTGGAGCTTGCTG 766
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 GGTGCACTGCGGTTCTCAAGCCATCAGAGCTGGCATCTGTTACTTGTTTGGAGCTTGCTG 660
Query 767 ATATTTGTCGAGAAGTTGGTCTTCCTCCTGGGGTCCTCAATGTTTTGACTGGTTTCGGTT 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 ATATTTGTCGAGAAGTTGGTCTTCCTCCTGGGGTCCTCAATGTTTTGACTGGTTTAGGTT 720
Query 827 CGGAAGCTGGTGCTCCTTTGGCATCACATCCTGGCGTGGACAAGATTGCATTTACTGGAA 886
|||||||||||||| ||||||||||||| || || |||||||||||||||||||||||||
Sbjct 721 CGGAAGCTGGTGCTTCTTTGGCATCACACCCCGGAGTGGACAAGATTGCATTTACTGGAA 780
Query 887 GTTTCGCCACAGGAAGTAAGGTCATGACAGCCGCTGCTCAGTTGGTGAAGCCTGTTTCTA 946
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 781 GTTTTGCCACAGGAAGTAAGGTCATGACAGCTGCTGCTCAGTTGGTGAAGCCTGTTTCTA 840
Query 947 TGGAACTTGGTGGGAAGAGCCCTCTCATTGTGTTTGATGACGTTGATCTTGATAAAGCTG 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGGAACTTGGTGGGAAGAGCCCTCTCATTGTGTTTGATGACGTTGATCTTGATAAAGCTG 900
Query 1007 CTGAATGGGCTCTTTTCGGTTGCTTCTGGACAAATGGTCAAATCTGCAGTGCAACTTCCC 1066
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 901 CTGAATGGGCTCTCTTCGGTTGCTTCTGGACAAATGGTCAGATCTGCAGTGCAACTTCCC 960
Query 1067 GCCTTCTTGTTCACGAAAGCATCGCATCTGAGTTCATAGAGAAGCTTGTAAAATGGAGCA 1126
| ||||||||||| ||||||||||||||||| || ||||| ||||||||||| ||||| |
Sbjct 961 GTCTTCTTGTTCATGAAAGCATCGCATCTGAATTTATAGAAAAGCTTGTAAAGTGGAGTA 1020
Query 1127 AGAACATTAAAATTTCAGACCCCATGGAAGAAGGATGCAGGCTTGGTCCTGTAGTTAGCA 1186
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1021 AGAACATTAAAATTTCAGACCCCATGGAAGAAGGATGCAGGCTTGGTCCTGTCGTGAGCC 1080
Query 1187 AAGGACAGTACGAGAAGATATTGAAGTTTATCTCAACGGCCAAGAGTGAAGGAGCAACGA 1246
||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 1081 AAGGACAGTACGAGAAGATATTGAAGTTTATCTCAGCAGCTAAGAGTGAAGGAGCAACGA 1140
Query 1247 TCTTGCATGGTGGTTCCCGACCTGAGCATCTGGAAAAGGGCTTCTTCATTGAACCAACCA 1306
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1141 TCTTGCATGGTGGTTCTCGACCTGAGCATCTTGAAAAGGGCTTCTTCATTGAACCAACCA 1200
Query 1307 TCATAACTGATGTAACCACTTCAATGCAAATATGGAGAGAAGAAGTTTTCGGGCCTGTTC 1366
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1201 TCATAACTGATGTAACCACTTCAATGCAAATCTGGAGAGAAGAAGTTTTTGGGCCTGTTC 1260
Query 1367 TTTGCGTGAAAACATTTGCCAGTGAGGACGAGGCAATTGAGCTAGCAAATGACTCTCATT 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1261 TTTGCGTGAAAACATTTGCCAGTGAGGACGAGGCAATTGAGCTAGCAAATGACTCCCATT 1320
Query 1427 ACGGACTAGGAGCTGCAGTGATATCTAATGACACAGAAAGATGTGACCGTATAAGCGAGG 1486
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1321 ACGGACTAGGAGCTGCAGTGATATCTAATGACACAGAAAGATGTGACCGTGTAAGCGAGG 1380
Query 1487 CCTTTGAAGCTGGGATTGTCTGGATTAACTGCTCGCAGCCTTGCTTTACCCAAGCCCCAT 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CCTTTGAAGCTGGGATTGTCTGGATTAACTGCTCGCAGCCTTGCTTTACCCAAGCCCCAT 1440
Query 1547 GGGGTGGTGTCAAACGCAGTGGGTTTGGACGAGAACTTGGAGAATGGGGACTTGATAACT 1606
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GGGGTGGTGTAAAACGCAGTGGGTTTGGACGAGAACTTGGAGAATGGGGACTTGATAACT 1500
Query 1607 ACTTGAGTGTGAAGCAAGTGACTCTCTACACTTCAAACGATCCCTGGGGATGGTACAAAT 1666
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1501 ACTTGAGTGTGAAGCAAGTGACTCTCTACACTTCAAACGATCCATGGGGATGGTACAAAT 1560
Query 1667 CTCCCAACTAAGTAATGAA 1685
| |||||||||||||||||
Sbjct 1561 CCCCCAACTAAGTAATGAA 1579
> Ahg937567 jgi|Araly1|937567|scaffold_501758.1
Length=1552
Score = 856 bits (463), Expect = 0.0
Identities = 1134/1453 (78%), Gaps = 66/1453 (5%)
Strand=Plus/Plus
Query 251 TCGTTAATCCAGCTACTGAAGAGGTCATTGGTGATATTCCTGCAGCTACAACGGAGGACG 310
|||| ||||| || || ||||| |||| ||| ||||||| || || || | || || |
Sbjct 100 TCGTCAATCCCGCCACCGAAGATATCATCGGTTATATTCCAGCTGCAACTTCTGAAGATG 159
Query 311 TGGATG-TTGCTGT-CAACGCTGCT-CGAAGAGCA-TTATCAAGGAATAAAGGGAAA-GA 365
|||| | | ||||| || |||||| ||| |||| ||| | ||||| || ||||| ||
Sbjct 160 TGGA-GCTCGCTGTGGAA-GCTGCTAGGAA-AGCATTTA-CTAGGAA-CAACGGAAAGGA 214
Query 366 TTGGGCCAAAGCACCTGGAGCTGTTCGTGCTAAGTATTTACGTGCTATTGCTGCTAAGGT 425
|||||| |||||| |||| ||||||||||| || || || ||||||||||| ||||||||
Sbjct 215 TTGGGCTAAAGCATCTGGTGCTGTTCGTGCCAAATACTTGCGTGCTATTGCAGCTAAGGT 274
Query 426 AAAT-GAAAGAAAGACGGATCTGGCAAAGCTCGAGGCGCTTGATTGTGGTAAACCATTGG 484
||| || || ||| | || || || || || |||||| ||||||||||||||||| | |
Sbjct 275 -AATAGAGAGGAAGTCTGAACTAGCTAATCTTGAGGCGATTGATTGTGGTAAACCACTAG 333
Query 485 ATGAAGCAGTATGGGATATGGATGATGTTGCTGGATGTTTTGAATTTTATGCTGACCTTG 544
||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| |
Sbjct 334 ATGAAGCAGCATGGGACATGGATGATGTTGCTGGATGTTTTGAATATTATGCTGACCTAG 393
Query 545 CTGAAGGATTAGATGCTAAGCAGAAAGCACCAGTCTCGCTTCCCATGGAGAGTTTTAAGA 604
||||||| || ||||| |||||||| || || | || || || ||||| | |||||||
Sbjct 394 CTGAAGGCTTGGATGCAAAGCAGAAGGCTCCTCTTTCTCTACCGATGGATACTTTTAAGG 453
Query 605 GTTATGTTCTGAAGCAACCTCTCGGAGTTGT-GGGACTTATTACACCATGGAATTACCCC 663
||||| |||| ||| ||||| | || || || ||| || ||||| |||||||| || ||
Sbjct 454 GTTATATTCTCAAGGAACCTATTGGTGTAGTTGGG-CTGATTACTCCATGGAACTATCCG 512
Query 664 CTT-TTGATGGCTGTTTGGAAGGTGGCTCCTTCCCTTGCTGCAGGGTGCACTGCGATTCT 722
|| ||||||||||| ||||| || |||||||| |||||||| |||||||| || || ||
Sbjct 513 -TTATTGATGGCTGTCTGGAAAGTTGCTCCTTCACTTGCTGCTGGGTGCACAGCAATACT 571
Query 723 CAAGCCATCAGAGCTGGCATCAGTTACTTGTTTGGAGCTTGCTGATATTTGTCGAGAAGT 782
|| || |||||| |||| || | || ||||||||||| ||||||||||| || || ||
Sbjct 572 GAAACCTTCAGAGTTGGCCTCCCTGACATGTTTGGAGCTCGCTGATATTTGCCGCGAGGT 631
Query 783 TGGTCTTCCTCCTGGGGTCCTCAATGTTTTGACTGGTTTCGGTTCGGAAGCTGGTGCTCC 842
||||| || ||||| || || ||| || |||||||||| || | ||||| ||||||||
Sbjct 632 GGGTCTACCACCTGGTGTTCTTAATATTCTGACTGGTTTAGGAACTGAAGCAGGTGCTCC 691
Query 843 TTTGGCATCACATCCTGGCGTGGACAAGATTGCATTTACTGGAAGTTTCGCCA-CAGGAA 901
||||||| ||||| || |||||||||| ||| |||||||| | || | ||||
Sbjct 692 GCTGGCATCGCATCCACATGTTGACAAGATTGTATTCACTGGAAGCA-CAACAACTGGAA 750
Query 902 GTAAGG-TCATGACAGCCGCTGCTCAG-TTGGTGAAGCCTGTTTC-TATGGAACTTGGTG 958
| | | | ||||| ||||||| || ||||| || |||||||| | |||| ||||| |
Sbjct 751 GCA-GCATTATGACTTCCGCTGC-CAAATTGGTTAAACCTGTTTCCT-TGGAGCTTGGGG 807
Query 959 GGAAGAGCCCTCTCATTGTGTTTGATGACGTTGATCTTGATAAAGCTGCTG-AATGGGCT 1017
|||| |||||| ||||||| |||||||| |||||| |||||||||||| || ||||| ||
Sbjct 808 GGAAAAGCCCTATCATTGTCTTTGATGATGTTGATATTGATAAAGCTG-TGGAATGGACT 866
Query 1018 CT-TTTCGGTTGCTTCTGGACAAATGGTCAAATCTGCAGTGCAACTTCCCGCCTTCTTGT 1076
| ||| ||||| |||||||| ||||| || || |||||||| || || || ||||| ||
Sbjct 867 ATGTTT-GGTTGTTTCTGGACGAATGGGCAGATTTGCAGTGCCACATCTCGACTTCTCGT 925
Query 1077 TCACGAAAGCATCGC--ATCTGAGTTCATAGAGAAGCTTGTAAAATGGAGCAA-GAACAT 1133
|| ||||| || || | | || || | || ||||| ||||| |||| ||| ||||||
Sbjct 926 GCATGAAAGGATTGCTGA-C-GAATTTTTGGACAAGCTGGTAAAGTGGA-CAAAGAACAT 982
Query 1134 TAAAATTTCAGACCCCATGGAAGAAGGATGCAGGCTTGGTCCTGTAGTTAGCAAAGGACA 1193
||| |||||||| || | |||||||| || |||||||||||||| || |||||||||||
Sbjct 983 TAAGATTTCAGATCCTTTTGAAGAAGGCTGTAGGCTTGGTCCTGTTGTCAGCAAAGGACA 1042
Query 1194 GTACGAGA-AGATATTGAAGTTTATCTCAA-CGGCCAAG-AGTGAAGGAGCAAC-GATC- 1248
|||||| | || | | ||||||| |||||| || | | | | |||||| ||||| | ||
Sbjct 1043 GTACGACAGAGTTCT-GAAGTTTGTCTCAAACG-CTA-GTAATGAAGGTGCAACTG-TCC 1098
Query 1249 TT-GCATGGTGGTTCCCGACCTGAGCATCTGGAA-AAGGGCTTCTTCATTGAACCAACCA 1306
|| | ||| || | || ||||||||| | || ||||| | ||| ||||||| | |
Sbjct 1099 TTTG--TGGAGGAACTCGCCCTGAGCATTTA-AAGAAGGGATACTTTGTTGAACCTGCGA 1155
Query 1307 TCATAACTGATGTAACCACTTCAATGCAAATATGGAGAGAAGAAGT-TTTCGGGCCTGTT 1365
| || | |||| || ||||||||| |||| |||||||| ||||| ||| || |||| |
Sbjct 1156 TTATTTCAAATGTGACTACTTCAATGGAAATCTGGAGAGAGGAAGTCTTT-GGTCCTGCT 1214
Query 1366 CTTTGCGTGAAAACATTTGCCAGTGAGGACGAGGCAATTGAGCTAGCAAATGACTCTCAT 1425
|| || || ||||||||| ||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1215 CTGTGTGTCAAAACATTTTCCACAGAGGATGAGGCAATTGAGCTGGCAAATGACTCTCAA 1274
Query 1426 TACGGACTAGGAG-CTGCAGTGAT-ATCTAATGACACAGAAA-GATGTGACCGTATAAGC 1482
|| ||| ||| | | ||||| || ||| ||||| | | | | ||||| ||| | ||
Sbjct 1275 TATGGATTAGCCGGC-GCAGT-ATTATCAAATGAT-CTGGACCGCTGTGATCGTGTTAGT 1331
Query 1483 GAGGCCTTTGAAG-CTGGGATT-GTCTGGATTAACTGCTCGCAGCCTTGCTT-TACCCAA 1539
|||| ||| || | |||| | || ||| | |||||||| ||||| ||||| | || ||
Sbjct 1332 AAGGC-TTTCCAGGC-GGGAATAGTATGGGTCAACTGCTCTCAGCCATGCTTCTGCC-AA 1388
Query 1540 GCCCCATGGGGTGGTGTCAAACGCAGTGGGTTTGGACGAGAACTTGG-AGAATGGGGACT 1598
|| ||||||||||| |||||||||||| ||||| || ||| |||| ||||||||||||
Sbjct 1389 GCTCCATGGGGTGGAACCAAACGCAGTGGATTTGGCCGTGAA-TTGGGAGAATGGGGACT 1447
Query 1599 TGATAACTACTTGAGTGTGAAGCAAGTGACTCTCTACA-CTTCAAACGATCCCTGGGGAT 1657
||| |||||||||||||||||||| ||||| | || | || | | || || |||||||
Sbjct 1448 TGAGAACTACTTGAGTGTGAAGCAGGTGACACAGTATATCT-CTGATGAACCATGGGGAT 1506
Query 1658 GGTACAAATCTCC 1670
|||||||| ||||
Sbjct 1507 GGTACAAACCTCC 1519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69209975165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5