BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74930.1
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476631 jgi|Araly1|476631|fgenesh2_kg.2__1761__AT1G74930.1 830 0.0
Ahg472144 jgi|Araly1|472144|fgenesh2_kg.1__2098__AT1G19210.1 235 4e-61
> Ahg476631 jgi|Araly1|476631|fgenesh2_kg.2__1761__AT1G74930.1
Length=816
Score = 830 bits (449), Expect = 0.0
Identities = 723/840 (86%), Gaps = 80/840 (10%)
Strand=Plus/Plus
Query 47 GAACCGGAAACAGAATCCAATTCAACCAAACCGAATCGAACCGAACCGGAGTTT-TTATC 105
||||||| |||||||||||||||||||||| | |||||| |||||| |||| || ||
Sbjct 33 GAACCGG-AACAGAATCCAATTCAACCAAA-C----CGAACCAAACCGG-GTTTCTTTTC 85
Query 106 CAATGGTGAAGCAAGCGATGAAGGAAGAGGAGAAGAAGAGAAACACGGCGATGCAGTCAA 165
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 86 CAATGGTGAAGCAAGCGATCAAGGAAGAGGAGAAGACGAGAAACACGGCGATGCAGTCAA 145
Query 166 AGTACAAAGGAGTGAGGAAGAGGAAATGGGGAAAATGGGTATCGGAGATCAGACTTCCAC 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 AGTACAAAGGAGTGAGGAAGAGGAAATGGGGAAAATGGGTATCGGAGATCAGACTTCCAC 205
Query 226 ACAGCAGAGAACGAATTTGGTTAGGCTCTTACGACACTCCCGAGAAGGCGGCGCGTGCTT 285
| ||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 206 ATAGCAGAGAACGTATCTGGTTAGGCTCTTACGAAACTCCAGAGAAGGCGGCGCGTGCTT 265
Query 286 TCGACGCCGCTCAATTTTGTCTCCGCGGCGGCGATGCTAATTTCAATTTCCCTA-ATAAT 344
||||||||||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct 266 TCGACGCCGCTCAATTTTGTCTCCGCGGCGGAGAAGCTAATTTCAATTTCCC-AGATAAT 324
Query 345 CCACCGTCGATCTCCGTAGAAAAGTCGTTGACGCCTCCGGAGATTCAGGAAGCTGCTGCT 404
|||||||| ||||||| || || ||||||||||||||||||||| |||||||| ||||||
Sbjct 325 CCACCGTCTATCTCCGGAGGAAGGTCGTTGACGCCTCCGGAGATCCAGGAAGCGGCTGCT 384
Query 405 AGATTCGCTAACACATTCCAAGACA-T-T-GT------CAAGGGAGAAG-A-A-GAA--- 449
||||||| |||| | |||||||| | | || ||||||||||| | | |||
Sbjct 385 CGATTCGCCAACATAACCCAAGACAGTGTTGTTGTTGTCAAGGGAGAAGGAGAAGAAGAA 444
Query 450 TCGGGTTTAGTACCCGGATCCGAGATCCGACCAGAGTCTCCTTCTACATCTGCATCTGTT 509
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 445 TCGGGTTTAGTACCCGGATCCGAGATCCGACCAGAGTCTCCTTCTACCTCTGCATCTGTG 504
Query 510 GCTACATCGACGGTGGATTATGATTTTTCGTTTTTGGATTTGCTTCCGATGAATTTCGGG 569
|||||||||||||||||||||||| | |||||||| ||||||||||||||| ||||||||
Sbjct 505 GCTACATCGACGGTGGATTATGATCTATCGTTTTTCGATTTGCTTCCGATGGATTTCGGG 564
Query 570 TTTGATTCCTTCTCCGACGACTTCTCTGGCTTCTCCGGTGGTGATCGATTTACAGAGATT 629
||||| | ||| ||||| | |||| |||||||||||||||||
Sbjct 565 TTTGA--C-------GAC---TTCTC---C------GGTG---ATCGATTTACAGAGATT 600
Query 630 TTACCCATCGAAGATTACGGAGGAGAGAGTTTATTAGATGAATCTTTGATTCTTTGGGAT 689
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 601 TTACCCATCGAAGATTACGGAGGAGAGAGTCTATTAGATGAATCTTTGCTTCTTTGGGAT 660
Query 690 TTTTGAATTCCCAAACATAATAtttttttAGAGCGAACTGTGAGATTTTCCTTGGAGTCA 749
|||||||||||||||||| ||| | | | || |||||||||||
Sbjct 661 TTTTGAATTCCCAAACAT------------GAG-G---T-T----TT--CCTTGGAGTCA 697
Query 750 TGGAGAAATCTGGAGATTTTTTGTAACACGGAGCTCCAATGACCCGGGAATTTCTTTCGT 809
||||| || |||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 698 TGGAGTAACCTGGAGATTTTT-GTAACACGGAGCTCCAATGACCCGGGAACTTCTTTCGT 756
Query 810 TTCGGATCCGAATTTGATGTGGATCATAT---TCA--CA--CCTATAttttttcattttt 862
||||||||||||||| ||||||||||| ||| || |||||||||||||| ||||
Sbjct 757 TTCGGATCCGAATTTCTTGTGGATCATACCAATCATTCATTCCTATATTTTTTCAATTTT 816
> Ahg472144 jgi|Araly1|472144|fgenesh2_kg.1__2098__AT1G19210.1
Length=698
Score = 235 bits (127), Expect = 4e-61
Identities = 224/269 (83%), Gaps = 14/269 (5%)
Strand=Plus/Plus
Query 154 CGATGCAGTCAAAGTACAAAGGAGTGAGGAAGAGGAAATGGGGAAAATGGGTATCGGAGA 213
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 23 CGATGCAGTCAAAGTACAAAGGAGTGAGGAAGAGGAAATGGGGGAAATGGGTTTCAGAGA 82
Query 214 TCAGACTTCCACACAGCAGAGAACGAATTTGGTTAGGCTCTTACGACACTCCCGAGAAGG 273
||||||| ||| ||||||||||||| |||||||| ||||||||||| ||||| |||||||
Sbjct 83 TCAGACTACCAAACAGCAGAGAACGTATTTGGTTGGGCTCTTACGATACTCCTGAGAAGG 142
Query 274 CGGCGCGTGCTTTCGACGCCGCTCAATT-TTGTCTCCGCGGCGGCGATGCTAATTTCAAT 332
||||||||||||||||||| |||| || ||| ||||| ||| | | || || ||||||
Sbjct 143 CGGCGCGTGCTTTCGACGCGGCTCT-TTATTGCCTCCGTGGCAACAACGCCAAGTTCAAT 201
Query 333 TTCCCTAATAATCCACCG-TCGATCT-C--CGTA-GAAAAGTCGTTGACGCCTCCGGAGA 387
|||||| |||| || ||| | |||| | || | |||| | || | || || | |||
Sbjct 202 TTCCCTGATAACCCTCCGGT-GATCAACGACGGACGAAACTT-GTCG-CGA-TCTG-AGA 256
Query 388 TTC-AGGAAGCTGCTGCTAGATTCGCTAA 415
| | || ||||||||||||| ||||||||
Sbjct 257 TCCGAG-AAGCTGCTGCTAGGTTCGCTAA 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34043764881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5