BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74940.1
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926875 jgi|Araly1|926875|scaffold_202436.1 1059 0.0
Ahg911737 jgi|Araly1|911737|Al_scaffold_0001_1991 135 5e-31
> Ahg926875 jgi|Araly1|926875|scaffold_202436.1
Length=712
Score = 1059 bits (573), Expect = 0.0
Identities = 663/705 (94%), Gaps = 11/705 (2%)
Strand=Plus/Plus
Query 217 TTCTTGATTATGATACTAAGCAAGAGACCTCATCTAATGATCCGTAAATTGTCTGAGATG 276
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 TTCTTGATTATGATTCTAAGCAAGAGACCTCATCTAATGATCCGTAAATTGTCTGAGATG 71
Query 277 TTGGTTCCAAGAAGCAGATCTGCTGCTATTAAACCGGAGGAGTACACGGCCAGTCCGAGA 336
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 72 TTGGTTCCAAGAAGCAGATCTGCTGCTATTAAACCGGAGGAGTACACGGCGAGTCCGAGA 131
Query 337 AGTCCGTTGGATTTGAACTTCCCCTCCCCGGTTCACTCGAAGCGGTTCGGTTCTGGTGGT 396
||||| ||||||||||||||||| || |||||| ||||||||||||||||||| ||||||
Sbjct 132 AGTCCCTTGGATTTGAACTTCCCGTCGCCGGTTAACTCGAAGCGGTTCGGTTCCGGTGGT 191
Query 397 GTCGGTTTGGGTATTGTTGCTGCGTTGGAGGAAACTAGCAACGGGATTAACCGGCATGAT 456
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 192 GTCGGTTTGGGTATTGTAGCTGCGTTGGAGGAAACTAGCAACGGGATTAACCGGCACGAT 251
Query 457 CCGGTTCGTTACTCCGGGAGATTCAGGTG-CCCGGAGATTGATCTGTCGGATGAGGA--A 513
|||||||||||||| ||||||||| |||| |||| |||||||||||||||||||||| |
Sbjct 252 CCGGTTCGTTACTCTGGGAGATTCCGGTGTCCCG-AGATTGATCTGTCGGATGAGGAGGA 310
Query 514 -TACACTTATGTTACGAGCCCAAACGGGCCGACCAAAGTGTATTACAACGACGACGGGTT 572
||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 311 ATACACTTATGTCACGAGCCCAAACGGACCGACTAAAGTGTATTACAACGACGACGGGTT 370
Query 573 TGAATTGTCTGAAAATGATTATCGGAGAGTTCATAAACCGATGGTTACCGTCGATGAACC 632
|||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 371 TGAATTGTGTGAAAATGATTATCGGAGAGTGCATAAACCGATGGTTATTGTCGATGAACC 430
Query 633 ACCGGTTATTGAAAGACAGAGTGT-TAGGGGTCCAACAGAGTTTCTGAGTTCGTGTTGCT 691
|||||||||| ||||||||||| | ||||| ||| || ||||||||||||||||||||||
Sbjct 431 ACCGGTTATTAAAAGACAGAGT-TATAGGGATCCGACTGAGTTTCTGAGTTCGTGTTGCT 489
Query 692 TGTGTAAGAAGAAACTTCAAGGCAAAGACATATACATGTACAAAGGAGAGATGGGATTTT 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 TGTGTAAGAAGAAACTTCAAGGCAAAGACATATACATGTACAAAGGAGAGATGGGATTTT 549
Query 752 GTAGTGCCGAATGCAGATCAGTGCAAATAATGAATGACGAACGACAAGAGCAATGTAAAA 811
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 550 GTAGTGCTGAATGCAGATCAGTGCAAATAATGAATGACGAACGAAAAGAGCAATGTAAGA 609
Query 812 CGCAAGTTTCAAGAAACGCCGACGTTTTGAGCTCTCCTTACGCCGCCGGACAGA-GATTA 870
|||| ||||||||||||| |||||||| || |||||||| |||||||||||||| | |||
Sbjct 610 CGCAGGTTTCAAGAAACGTCGACGTTTCGACCTCTCCTTGCGCCGCCGGACAGACG-TTA 668
Query 871 TCTGCCGG-AGTATTCGTATTTTAGGATGATCACAATTCACAATA 914
|||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 669 TCTGCCGGGA-TATTCGTATTTTAGGATCATCACAATTCACAATA 712
> Ahg911737 jgi|Araly1|911737|Al_scaffold_0001_1991
Length=663
Score = 135 bits (73), Expect = 5e-31
Identities = 242/320 (76%), Gaps = 26/320 (8%)
Strand=Plus/Plus
Query 488 CGGAGATTGATCTGTCGGA---TGAGGAATACACTTATGTTACGAGC-CCAAACGGGCC- 542
|||| |||||||| || || |||||||||||||| || |||| | | | ||||
Sbjct 269 CGGATATTGATCTATCTGACTCTGAGGAATACACTTGCGTCACGA-CTCGTGA-TGGCCG 326
Query 543 GACCAAAGTGTATTACAACGACGACGGGTTTGAA-TT-GTCTGAA--AAT-GA----TTA 593
||||||||| ||||||||||| || | |||||| || ||| ||| || || | |
Sbjct 327 GACCAAAGTCTATTACAACGAAGAAGAATTTGAATTTGGTCAGAATCTATCGACCGGTGA 386
Query 594 TCGGAGAGTT-CATAAACCGATGGTTACCGTCGATGAACCACCGGTTATTGAAAGACAGA 652
|| |||| || | ||| ||| | | || ||| ||| ||||||| | | |||| |||
Sbjct 387 TCAGAGA-TTGAAAAAATGGATAGAAATCGCCGAGGAATCACCGGTGA-AG-AAGAGAGA 443
Query 653 -GTGTT-AGGGGTCCAACAGAGTTTCTGAGTTCGTGTTGCTTGTGTAAGAAGAAACTTCA 710
|| || || | | | |||| ||||||| ||| ||||| ||||||||||||||||||||
Sbjct 444 GGTATTGAGAGATTCTCCAGATTTTCTGACTTCATGTTGTTTGTGTAAGAAGAAACTTCA 503
Query 711 AGGCAAAGACATATACATGTACAAAGGAGA-GATGGGATTTTGTAGTGCCGAATGCAGAT 769
|||||||||||| ||||||||||||||||| || || |||||||||| || || ||||
Sbjct 504 AGGCAAAGACATTTACATGTACAAAGGAGATGAAGG-ATTTTGTAGTAAAGAGTGTAGAT 562
Query 770 CAGT-GCAAATAATGAATGA 788
| || | |||||||| ||||
Sbjct 563 C-GTTGAAAATAATGGATGA 581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45061287894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5