BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74950.1
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476633 jgi|Araly1|476633|fgenesh2_kg.2__1763__AT1G74950.1 946 0.0
> Ahg476633 jgi|Araly1|476633|fgenesh2_kg.2__1763__AT1G74950.1
Length=1171
Score = 946 bits (512), Expect = 0.0
Identities = 737/836 (88%), Gaps = 53/836 (6%)
Strand=Plus/Plus
Query 185 CGATGTCGAGTTTTTCTGCCGAGTGTTGGGACTTCTCTGGTCGTAAACCGAGCTTTTCAC 244
|||||||||| ||||||||||| ||||||||| |||||||| || |||||||||||||
Sbjct 136 CGATGTCGAG---TTCTGCCGAGTTTTGGGACTTGTCTGGTCGGAAGCCGAGCTTTTCAC 192
Query 245 AAACATGTACTCGATTGAGTCGTTACCTGAAGGAGAAGGGTAGTTTTGGAGATCTGAGCT 304
| ||||||| |||||| ||||||||||||||||| || ||||||||||||||||||| ||
Sbjct 193 AGACATGTAGTCGATTAAGTCGTTACCTGAAGGAAAATGGTAGTTTTGGAGATCTGACCT 252
Query 305 TAGGGATGACATGCAAGCCCGACGTTAATGGA------G--G-TTCACGTCAGCCTACAA 355
||||||||||||||||||| ||| | | |||| | | |||||||||||||||||
Sbjct 253 TAGGGATGACATGCAAGCCTGACCTCAGTGGAGGTGTTGCTGTTTCACGTCAGCCTACAA 312
Query 356 TGATGAATCTGTTCCCTTGTGAAGCTTCAGGAATGGATTCTTCTGCTGGTCAAGAAGACA 415
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 313 TGATGAATCTGTTCCCTTGTGAAGCTTCAGGAATGGATTCTTCTGCTGCTC---AAGACA 369
Query 416 TTAAACCGAAGACTATGTTTCCGAGACAATCAAGCTTTTCTTCTTCCTC-T--TCCTCTG 472
|||||||||||| | ||||||| ||||||||||||||||||||||| || | |||||||
Sbjct 370 TTAAACCGAAGAATGTGTTTCCCAGACAATCAAGCTTTTCTTCTTCTTCTTGCTCCTCTG 429
Query 473 GGACCAAAGAAGATGTACAGATGATCAAAGAGACTACTAAATCTGTGAAGCCAGAGTCTC 532
|||||||||||||||| | ||||||||||||| | |||||||||||||||||||||||
Sbjct 430 GGACCAAAGAAGATGTCCTCATGATCAAAGAGA-T--TAAATCTGTGAAGCCAGAGTCTC 486
Query 533 AATCTGCTCCGTTGACTATATTCTACGGTGGTCGAGTTATGGTGTTTGATGATTTTTCTG 592
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 487 AATCTGCTCCGTTGACCATATTCTACGGTGGTCGAGTTATGGTCTTTGATGATTTTTCTG 546
Query 593 CTGAGAAAGCTAAAGAAGTCATTGATTTGGCTAACAAAGGAAGTGCCAAAAGCTTCACAT 652
|||| ||||| ||| |||| |||||||||||||||||||||||| || ||||
Sbjct 547 CTGAAAAAGCCAAACAAGTTATTGATTTGGCTAACAAAGGAAGTTCC-AAAG-------- 597
Query 653 GTTTCACAGCTGAAGTAAACAATAACCATAGTGC----T-T----A-TT--------CTC 694
|||||||||||||||| ||||||| ||| ||||| | | | || |||
Sbjct 598 GTTTCACAGCTGAAGTGAACAATAGCCAGAGTGCTTATTCTCAAAACTTGGCCAAGACTC 657
Query 695 AAAAAGAGATTGCTTCTAGCCCAAATCCTGTTTGTAGTCCTGCAAAAACCGCAGCACAAG 754
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 658 AAAAAGAGATTGCTTCTAGCCCCAATCCCGTTTGTAGTCCTGCGAAAACCGCAGCACAAG 717
Query 755 AGC-CAATTCAGCCTAACCCGGCCTCTTTAGCCTGCGAACTCCCGATTGCAAGAAGAGCT 813
| | |||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 718 A-CTCAATCCAGCCCAACCCGGCCTCTTTAGCCTGCGAACTCCCGATTGCCAGAAGAGCT 776
Query 814 TCACTTCATCGGTTCCTTGAGAAGAGGAAGGATAGGATCACATCAAAGGCACCATACCAA 873
|| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 777 TCGCTTCATCGATTCCTAGAGAAGAGGAAGGACAGGATCACATCAAAGGCACCATACCAA 836
Query 874 ATAGACGGTTCAGCTGAAGCGTCTTCCAAGCCTACTAACCCAGCTTGGCTCAGTTCACGG 933
|||||||||||||||||||||||||| ||||||| | |||||||||||||||||| |||
Sbjct 837 ATAGACGGTTCAGCTGAAGCGTCTTCAAAGCCTA--A-CCCAGCTTGGCTCAGTTCGCGG 893
Query 934 TAAACTTCGAGCCTGTCCGACCCAGAAGGCACAACTTGAGAGACCTTCTTGTAAGA 989
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 894 TAAACTTCGAGCATGTCCGACCCAGAAGGCACAACTTGAGAGACCTTCTCGTAAGA 949
Score = 309 bits (167), Expect = 3e-83
Identities = 218/239 (91%), Gaps = 18/239 (8%)
Strand=Plus/Plus
Query 1020 AAGCTGCTCCTCTGTTCATTTTTTCTATAGATTAATTTCACCCCTAGTAGTTTTGTTTGT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 AAGCTGCTCCTCTGTTCATTTTTTCTATAGATTAATTTCACCCCTAGTAGTTTTGTTTGT 1008
Query 1080 TTAACTCCCCCGAAAACTCATTATATTTGTATGAAATCAATATCAATAGTGTTCAATGTT 1139
|||||| ||| |||||||||||||| | | || |||||| | ||||||||||
Sbjct 1009 TTAACT-CCCGGAAAACTCATTATA--T-T-TG-------TATCAA-A--GTTCAATGTT 1053
Query 1140 TGCTTCTGGGG-TTTAAGTTTTAGCCAGTGTGTATAACCCTTTCCTCTGC-CGATCTCAA 1197
||||||||||| ||||||||| ||||| |||||||||||||||||||||| | |||||||
Sbjct 1054 TGCTTCTGGGGTTTTAAGTTTAAGCCATTGTGTATAACCCTTTCCTCTGCTC-ATCTCAA 1112
Query 1198 CATTAGCTTGCAACTTTTGTAAGAAACATCACTTGTGTTTTTGTGTTGATGGCCATTAA 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 CATTAGCTTGCAACTTTTGTAAGAAACATCACTTGTGTTTTTGTGTTGATGGCCATTAA 1171
Score = 86.1 bits (46), Expect = 6e-16
Identities = 53/56 (95%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 92 ttttttAT-AAGATT-CGAGAAAATTCAACAACTCAGGAAGGAAGATCCTTTTGCT 145
|||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 66 TTTTTTATAAAGATTCCGAGAAAATTCAACAACTCAGGAAGGAAGATTCTTTTGCT 121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47844260835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5