BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74960.2
Length=2285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476635 jgi|Araly1|476635|fgenesh2_kg.2__1765__AT1G74960.1 3101 0.0
Ahg911743 jgi|Araly1|911743|Al_scaffold_0001_1997 1319 0.0
> Ahg476635 jgi|Araly1|476635|fgenesh2_kg.2__1765__AT1G74960.1
Length=2050
Score = 3101 bits (1679), Expect = 0.0
Identities = 1871/1959 (96%), Gaps = 32/1959 (2%)
Strand=Plus/Plus
Query 50 tctctctctctctct-ctctGTCTGTTTGTTTCAGAGAAGGATTTTTGGCGTCTCCACGC 108
||||||||||| ||| | ||||||||||||| |||| ||||| ||||||||||||||||
Sbjct 9 TCTCTCTCTCTATCTGTTGTGTCTGTTTGTTTGAGAGGAGGATATTTGGCGTCTCCACGC 68
Query 109 ACGATTTAACGCATCGAAGCTCTCTGCACGCTTCCT----GA-A-agag-agagagaaga 161
||||||| |||||||||||||||||||||||||||| || | |||| ||||||||||
Sbjct 69 ACGATTTTACGCATCGAAGCTCTCTGCACGCTTCCTGAAAGAGAGAGAGAAGAGAGAAGA 128
Query 162 gagagaTCGCAGATCGATttctcttaaatctctcgtgaatccca-ttt-gc-ct-tctct 217
||||||||||||||||||| |||||||||||||||||||||||| ||| || | |||||
Sbjct 129 GAGAGATCGCAGATCGATTCCTCTTAAATCTCTCGTGAATCCCATTTTGGCTTTGTCTCT 188
Query 218 ctgctagattctctcttcttctcttcacccatttctcgctttctcctttgttctctcatc 277
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 189 CTGCTAGA-------TTC-TCTCTTCACCCATTTCTCGCTTTCTCCTTTGTTCTCTCATC 240
Query 278 tgggttcttctcAAAGCCTCTTCCTTTTTATGCCATGGTGGGTGCGTCTTCCTCTTACGC 337
|||||||||||| ||||||||||| ||| |||||||||||||||||||||||| |||||
Sbjct 241 TGGGTTCTTCTC-AAGCCTCTTCC--TTT-TGCCATGGTGGGTGCGTCTTCCTCCTACGC 296
Query 338 ATCTCCGTTATGTACCTGGTTTGTTGCTGCTTGCATGTCCGTCTCTCACGGTGGAGGAGA 397
||||||||||||||||||||||||||| ||||||||||||||| ||||||| || |||||
Sbjct 297 ATCTCCGTTATGTACCTGGTTTGTTGCAGCTTGCATGTCCGTCGCTCACGGCGGTGGAGA 356
Query 398 TAGCCGTCAGGCTGTTGCTCTTCAATCTGGTGGGCGGAGTCGGCGAAGGAGGCAGCTTAG 457
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 357 TACCCGTCAGGCTGTTGCTCTTCAATCTGCTGGGCGGAGTCGGCGAAGGAGGCAGCTTAG 416
Query 458 CAAATGCTCTGT-CGCTTCTGGATCCGCTAGCATTCAGGCTCTCGTCACTTCTTGTTTGG 516
|||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 417 CAAATGCTCT-TCCGCTTCTGGATCCGCTAGCATTCAGGCTCTTGTCACTTCTTGTTTGG 475
Query 517 ATTTTGGTCCTTGTACTCACT------ACAACAACAACAATGCATTGTCTTCTCTCTTTG 570
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 476 ATTTTGGTCCCTGTACTCACTACAACAACAACAACAACAATGCATTGTCTTCTCTCTTTG 535
Query 571 GATCGAATAGTGTTTCTTTGAATCGAAACCAGAGGAGATTGAATCGTGCTGCTAGCTCCG 630
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
Sbjct 536 GATCGAATAGTGTTTCTTTGAATCGAAACCAGAGGAGACTGAATCGTGCAGCTAGCTCTG 595
Query 631 GTGGAGCCATGGCAGTGATGGAGATGGAAAAGGAAGCTGCGGTTAACAAGAAACCACCTA 690
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 596 GTGGAGCCATGGCAGTGATGGAGATGGAAAAGGAAGCCACCGTTAACAAGAAACCACCTA 655
Query 691 CGGAGCAGCGTCGAGTTGTAGTGACAGGCATGGGAGTTGAAACATCATTGGGTCATGACC 750
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 656 CGGAGCAGCGTCGAGTTGTAGTGACTGGCATGGGAGTTGAAACATCATTGGGTCATGACC 715
Query 751 CACATACCTTCTATGAGAATTTGCTACAAGGCAACAGTGGTATTAGCCAGATTGAAAATT 810
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 716 CACATACCTTTTATGAGAATTTGCTACAAGGCAACAGTGGTATTAGCCAGATTGAGAATT 775
Query 811 TTGATTGTTCTGAATTTCCTACGCGAATTGCGGGAGAGATCAAAAGCTTCTCGACTGAAG 870
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 776 TTGATTGTTCTGAATTTCCTACGCGAATTGCGGGTGAGATCAAAAGCTTCTCGACTGAAG 835
Query 871 GATGGGTTGCTCCAAAACTTTCTAAAAGGATGGACAAATTCATGCTCTATCTTCTCACAG 930
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 836 GATGGGTTGCTCCAAAACTTTCTAAAAGGATGGACAAGTTCATGCTCTATCTTCTCACAG 895
Query 931 CTGGTAAGAAAGCTTTGGCTGATGGTGGGGTTACTGATGAAGTAATGGCAGAGTTTGACA 990
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 896 CTGGCAAGAAAGCTTTGGCTGATGGTGGGGTAACTGATGAAGTAATGGCAGAGTTTGACA 955
Query 991 AAACCAAATGTGGAGTTTTGATTGGCTCGGCAATGGGAGGAATGAAGGTCTTTTACGATG 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 956 AAACCAAATGTGGAGTTTTGATTGGCTCGGCAATGGGAGGAATGAAGGTCTTTTATGATG 1015
Query 1051 CTATTGAAGCTCTGAGAATCTCTTACAAGAAGATGAATCCTTTTTGTGTACCTTTTGCGA 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CTATTGAAGCTCTGAGAATCTCTTACAAGAAGATGAATCCTTTTTGTGTACCTTTTGCGA 1075
Query 1111 CAACAAACATGGGTTCTGCTATGCTTGCCATGGATCTGGGATGGATGGGGCCAAACTATT 1170
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1076 CGACAAACATGGGTTCTGCTATGCTTGCTATGGATCTGGGATGGATGGGGCCAAACTATT 1135
Query 1171 CTATTTCAACTGCTTGTGCCACAAGCAACTTTTGCATTCTGAATTCAGCAAACCACATTA 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CTATTTCAACTGCTTGTGCCACAAGCAACTTTTGCATTCTGAATTCAGCAAACCACATTA 1195
Query 1231 TTAAAGGTGAAGCTGATGTAATGCTCTGTGGTGGCTCAGATGCAGTTATTATTCCAATAG 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TTAAAGGTGAAGCTGATGTAATGCTCTGTGGTGGCTCAGATGCAGTTATTATTCCAATAG 1255
Query 1291 GGTTGGGAGGTTTTGTTGCATGCCGGGCTCTTTCACAAAGGAATAATGATCCCACAAAAG 1350
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1256 GGTTGGGAGGTTTTGTTGCATGCCGGGCTCTTTCACAAAGGAATAATGATCCTACAAAAG 1315
Query 1351 CTTCACGTCCTTGGGATACCAATCGAGATGGTTTCGTGATGGGAGAGGGAGCTGGAGTTC 1410
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CTTCACGTCCTTGGGATATCAATCGAGATGGTTTCGTGATGGGAGAGGGAGCTGGAGTTC 1375
Query 1411 TACTTTTGGAAGAACTCGAGCATGCTAAGAAAAGAGGTGCAACTATCTACGCAGAGTTCC 1470
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1376 TACTTTTGGAAGAACTCGAGCATGCTAAGAAAAGAGGAGCAACTATCTACGCAGAGTTCC 1435
Query 1471 TCGGTGGGAGTTTCACATGTGATGCCTATCACATGACCGAGCCTCACCCTGATGGGGCTG 1530
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1436 TCGGTGGGAGTTTCACATGTGATGCGTATCACATGACCGAGCCTCACCCTGATGGGGCTG 1495
Query 1531 GTGTTATTCTCTGTATTGAGAGAGCGTTAGCTAGTGCTGGGATTTCCAAGGAACAAATAA 1590
| || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1496 GCGTCATTCTCTGTATCGAGAGAGCGTTAGCTAGTGCTGGGATTTCCAAGGAACAGATAA 1555
Query 1591 ATTACATAAATGCACATGCAACCTCAACGCATGCTGGAGATATTAAGGAATACCAAGCCC 1650
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 1556 ATTACATAAATGCACATGCAACCTCAACACACGCTGGAGATATTAAGGAGTACCAAGCCC 1615
Query 1651 TTGCTCACTGTTTTGGCCAAAATCCTGAGCTTAAGGTAAATTCCACAAAATCTATGATTG 1710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TTGCTCACTGTTTTGGCCAAAATCCTGAGCTTAAGGTAAATTCCACAAAATCTATGATTG 1675
Query 1711 GACACTTGCTGGGAGCTGCTGGGGCCGTGGAGGCTGTTGCAACTGTGCAGGCGATACGGA 1770
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | |
Sbjct 1676 GACACTTGCTGGGAGCTGCTGGGGCCGTGGAGGCTGTTGCAACCGTGCAGGCAATAAGAA 1735
Query 1771 CCGGATGGGTTCATCCAAATATCAACCTCGAGAATCCAGACAGTGGAGTGGATACAAAGC 1830
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1736 CTGGATGGGTTCATCCAAATATCAACCTTGAGAATCCTGACAGTGGAGTGGATACAAAGC 1795
Query 1831 TGCTGGTGGGTCCTAAGAAGGAGAGACTGGACATTAAAGCAGCCTTGTCAAATTCATTCG 1890
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1796 TGCTGGTGGGTCCTAAGAAGGAGAGATTGGACATTAAAGCAGCCTTGTCAAATTCTTTCG 1855
Query 1891 GGTTTGGTGGTCATAACTCCAGCATCATTTTTGCTCCTTACAAGTGAAAGCGAAAGCAGT 1950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1856 GGTTTGGTGGTCATAACTCCAGCATCATTTTTGCTCCTTACAAGTGAAAGCGAAAGCCGT 1915
Query 1951 TGCTTGTACTCCAAACCTGATTGTATAACTTGCTGTAAG 1989
| |||||||||||||||||||||||||||||||||||||
Sbjct 1916 TCCTTGTACTCCAAACCTGATTGTATAACTTGCTGTAAG 1954
> Ahg911743 jgi|Araly1|911743|Al_scaffold_0001_1997
Length=1449
Score = 1319 bits (714), Expect = 0.0
Identities = 995/1133 (88%), Gaps = 10/1133 (1%)
Strand=Plus/Plus
Query 810 TTTGATTGTTCTGAATTTCCTACGCGAATTGCGGGAGAGATCAAAAGCTTCTCGACTGAA 869
|||||||| |||| ||||||||| |||| || ||||| || ||| ||| ||||| |||
Sbjct 322 TTTGATTGCTCTGCATTTCCTACTAGAATCGCTGGAGAAATTAAATCCTTTTCGACCGAA 381
Query 870 GGATGGGTTGCTCCAAAACTTTCTAAAAGGATGGACAAATTCATGCTCTATCTTCTCACA 929
|||| |||||||| ||||||||| ||||| ||||||||||||||||| |||||||| ||
Sbjct 382 GGATTGGTTGCTCTAAAACTTTCGAAAAGAATGGACAAATTCATGCTTTATCTTCTTACC 441
Query 930 GCTGGTAAGAAAGCTTTGGCTGATGGTGGGGTTACTGATGAAGTAATGGCAGAGTTTGAC 989
|||||||||||||| |||||||||||||| || ||||| || |||||||||||||| |||
Sbjct 442 GCTGGTAAGAAAGCGTTGGCTGATGGTGGAGTAACTGAGGATGTAATGGCAGAGTTAGAC 501
Query 990 AAAACCAAATGTGGAGTTTTGATTGGCTCGGCAATGGGAGGAATGAAGGTCTTTTACGAT 1049
||| ||| ||||||||||||||||||||| || ||| |||| |||||| ||||||| |||
Sbjct 502 AAATCCAGATGTGGAGTTTTGATTGGCTCAGCTATGAGAGGCATGAAGATCTTTTATGAT 561
Query 1050 GCTATTGAAGCTCTGAGAATCTCTTACAAGAAGATGAATCCTTTTTGTGTACCTTTTGCG 1109
|| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 GCGCTTGAAGCTTTGAAAATCTCTTACAAGAAGATGAATCCTTTTTGTGTACCTTTTGCG 621
Query 1110 ACAACAAACATGGGTTCTGCTATGCTTGCCATGGATCTGGGATGGATGGGGCCAAACTAT 1169
|| ||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 622 ACGACAAACATGGGATCCGCTATGCTTGCCATAGATCTGGGATGGATGGGTCCAAACTAC 681
Query 1170 TCTATTTCAACTGCTTGTGCCACAAGCAACTTTTGCATTCTGAATTCAGCAAACCACATT 1229
|||||||||||||| |||||||| | ||||| || ||| ||||| | ||||||||||||
Sbjct 682 TCTATTTCAACTGCATGTGCCACTGGAAACTTCTGTATTTTGAATGCGGCAAACCACATT 741
Query 1230 ATTAAAGGTGAAGCTGATGTAATGCTCTGTGGTGGCTCAGATGCAGTTATTATTCCAATA 1289
|||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 742 ATTAGAGGTGAAGCTGATGTAATGCTCTGTGGTGGCTCTGATTCAGTTATTATTCCAATA 801
Query 1290 GGGTTGGGAGGTTTTGTTGCATGCCGGGCTCTTTCACAA-AGGAATAATGATCCCACAAA 1348
|||||||||||||||||||| || || |||||||||||| || ||| | |||||||| ||
Sbjct 802 GGGTTGGGAGGTTTTGTTGCTTGTCGTGCTCTTTCACAACAG-AATGACGATCCCACCAA 860
Query 1349 AGCTTCACGTCCTTGGGATACCAATCGAGATGGTTTCGTGATGGGAGAGGGAGCTGGAGT 1408
|||||||||||||||||||| ||||| ||||||||| | ||||||||||||| ||||||
Sbjct 861 AGCTTCACGTCCTTGGGATAGTAATCGGGATGGTTTCTTCATGGGAGAGGGAGTTGGAGT 920
Query 1409 TCTACTTTTGGAAGAACTCGAGCATGCTAAGAAAAGAGGTGCAACTATCTACGCAGAGTT 1468
||| ||||| |||||||| |||||||| ||||||||||| |||||||| ||||| |||||
Sbjct 921 TCTGCTTTTAGAAGAACTTGAGCATGCCAAGAAAAGAGGAGCAACTATATACGCGGAGTT 980
Query 1469 CCTCGGTGGGAGTTTCACATGTGATGCCTATCACATGACCGAGCCTCACCCTGATGGGGC 1528
||| ||||| |||||||||| |||||| ||||| || || || || | |||||||| ||
Sbjct 981 CCTTGGTGGTAGTTTCACATCTGATGCATATCATATAACTGAACCACGTCCTGATGGTGC 1040
Query 1529 TGGTGTTATTCTCTGTATTGAGAGAGCG-TTAGCT-AGTGCTGGGATTTCCAAGGAACAA 1586
|||||| ||||||||||| |||| | | || ||| | || |||||||| |||||| |
Sbjct 1041 TGGTGTCATTCTCTGTATCGAGAAAACACTT-GCTCAC-GCCGGGATTTCTAAGGAAGAC 1098
Query 1587 ATAAATTACATAAATGCACATGCAACCTCAACGC-ATGCTGGAGATATTAAGGAATACCA 1645
||||||||||||||||| ||||| ||||| || | | |||||||| ||||||| |||||
Sbjct 1099 ATAAATTACATAAATGCTCATGCTACCTCTACACCA-GCTGGAGACCTTAAGGAGTACCA 1157
Query 1646 AGCCCTTGCTCACTGTTTTGGCCAAAATCCTGAGCTTAAGG-TAAATTCCACAAAATCTA 1704
|||| ||||||||||||||||||||||||| ||||| ||| |||| || ||||||||||
Sbjct 1158 AGCCTTTGCTCACTGTTTTGGCCAAAATCCAGAGCT-AAGAATAAACTCAACAAAATCTA 1216
Query 1705 TGATTGGACACTTGCTGGGAGCTGCTGGGGCCGTGGAGGCTGTTGCAACTGTGCAGGCGA 1764
|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 1217 TGATCGGACACTTGCTGGGAGCTGCTGGGGCCGTGGAGGCTGTTGCAACCATTCAGGCAA 1276
Query 1765 TACGGACCGGATGGGTTCATCCAAATATCAACCTCGAGAATCCAGACAGTGGAGTGGATA 1824
|| || |||||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 1277 TAAAAACAGGATGGGTTCATCCAAATATCAACCTGGAGAATCCAGACAAAGCAGTGGATA 1336
Query 1825 CAAAGCTGCTGGTGGGTCCTAAGAAGGAGAGACTGGACATTAAAGCAGCCTTGTCAAATT 1884
|||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1337 CAAAGCTGCTGGTGGGTCTTAAGAAGGAGAGGCTGGATATTAAAGCAGCCTTGTCAAATT 1396
Query 1885 CATTCGGGTTTGGTGGTCATAACTCCAGCATCATTTTTGCTCCTTACAAGTGA 1937
| |||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1397 CTTTCGGGTTTGGTGGACATAACTCTAGCATCATTTTTGCTCCTTACAAATGA 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86045863455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5