BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74990.1
Length=608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476637 jgi|Araly1|476637|fgenesh2_kg.2__1767__AT1G74990.1 789 0.0
> Ahg476637 jgi|Araly1|476637|fgenesh2_kg.2__1767__AT1G74990.1
Length=583
Score = 789 bits (427), Expect = 0.0
Identities = 539/589 (92%), Gaps = 23/589 (4%)
Strand=Plus/Plus
Query 34 GAAACCTCTATCTCATCGCCGAGGAAAAAAGATCTTACAATGGCTATTAAC---ACCATC 90
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1 GAAACCTCTCTCTCATCGCCGAGGAAAAAAGATCTTTCAATGGCTATTAACATGACCATC 60
Query 91 ACGAACGAAGAAGATGATGCATCAAACAACTTTGGATGCAATATCTGTCTTGAATTGGCA 150
|||||||||| | | ||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 61 ACGAACGAAG-A-A-GATGCTTCGAACAACTTTGGATGCAACATCTGTCTTGAATTGGCA 117
Query 151 AGAGAACCGATCGTGACTCTATGTGGTCATTTGTTCTGTTGGCCTTGTCTCTACAAGTGG 210
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AGAGAACCAATCGTGACTCTATGTGGTCATTTGTTCTGTTGGCCTTGTCTCTACAAGTGG 177
Query 211 CTCCATTACCATTCTAAATCAAATCATTGTCCTGTTTGTAAAGCTTTGGTTAAGGAAGAT 270
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTCCATTACCATTCTCAATCTAATCATTGTCCTGTTTGTAAAGCTTTGGTTAAGGAAGAT 237
Query 271 ACTTTGGTTCCTTTGTATGGAATGGGTAAGCCATCTTCTGATCCGAGATCGAAACTCAAT 330
| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 238 AGTCTGGTTCCTTTGTATGGAATGGGTAAGCCATCTTCTGACCCGAGATCGAAACTCAGT 297
Query 331 AGTGGTGTTACTGTCCCTAATCGACCAGCTGCGACTAGGACTGAAACAGCTCGACCTCGT 390
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 298 TGTGGTGTTACTGTCCCTAATCGACCAGCTGCGACTAGGATTGAAACAGCTCGTCCTCGT 357
Query 391 CTTGAACAAAGACATCATGGGTCTAGTTTCTTTGGTGGGCATTCAAGTTTTGCTGCCATG 450
|||| | |||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 358 CTTGGAGAAAGACATCATGGGTCTAGTTTCTTTGGTGGGCATTCAGGTTTTGCTGCGATG 417
Query 451 CCAACTGGTTTACGGTTTTCAAATTTCTTGTTGTAATGGAAAGTATCTTTTGATGAATCT 510
||||||||| ||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 418 CCAACTGGTACACGGTTTTCCAACTTCTTGTTGTAATGGAATGTATCTTTTGATGAATCT 477
Query 511 GAGT---C--TGtt-t-tttt-------GACAATGTTTTTGAAACTATTATTATACATTG 556
|||| | |||| | |||| ||||||||||||||||||||||| | |||||
Sbjct 478 GAGTAGACCGTGTTCTGTTTTTTTTTTTGACAATGTTTTTGAAACTATTAT-A--CATTG 534
Query 557 TCTACGATTTTTGTTATTTTGACAATTAATGTTTAGAGCTACTTTTACA 605
||||||||||||||||||||||| |||||||||| ||||||| ||||||
Sbjct 535 TCTACGATTTTTGTTATTTTGACTATTAATGTTTTGAGCTACATTTACA 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22225660611
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5