BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75000.1
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339683 jgi|Araly1|339683|fgenesh1_pg.C_scaffold_2001782 1327 0.0
> Ahg339683 jgi|Araly1|339683|fgenesh1_pg.C_scaffold_2001782
Length=846
Score = 1327 bits (718), Expect = 0.0
Identities = 798/837 (95%), Gaps = 3/837 (0%)
Strand=Plus/Plus
Query 13 AATTACTATTTAGCGGAGCATCCAACGATCGTTAACTTCCGTTGGAGTCCAACCCAATCC 72
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 10 AATTACTATCTAGCGGAGCATCCAACGATCGTTAACTTCCGTTGGAGTCCAACCCTATCA 69
Query 73 TACGCCTCCACGTGGTCTTTCCTCTTCACCGCCGTCTCATCTTACATCATCGCCGCCGTC 132
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 70 TACGCCTCCACGTGGTCTTTCCTCTTCACCGCCGTCTCATCTTACGTCATCGCCGCCGTC 129
Query 133 ActctccacctcctcctcctcataaccctctccctctctAACCGCCGCCGCGGATTCTCC 192
||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct 130 ACTCTCCACCTCCTCCTCCTCATAATCCTCTCCCTCTGTCACCGCCGCCGCGGATTCTCC 189
Query 193 CTCGGTCCAATCCCAGCTCTACACAGCTTAACCATTTCCATAATCTCCGCCGTCATATTC 252
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 190 CTCGGTCCAATCCCAGCTCTACACAGCTTAACCATTTCCATAATATCCGCCGTCATCTTC 249
Query 253 GTCGGTATCCTCCTCTCCGCCGCAGCAGAGATCAGAGACACGCGGTGGCTATGGCGTCGC 312
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 250 GTCGGAATCCTCCTCTCCGCCGCAGCAGAGATCAGAGACACGCGCTGGCTATGGCGTCGC 309
Query 313 ACCCGCACCACTGCTCTCCAATGGTTCCTCTGCTTTCCCGTAGGTACACGCGCTTCGGGA 372
|| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 310 ACACGCACCACGGCTCTCCAATGGTTCCTCTGTTTTCCCGTAGGTACACGCGCTTCGGGG 369
Query 373 CGCGTGTTCTTCTGGTCATACGCGTTTTACCTCTCAAGATTCCTTCACTTGTTCCGTACT 432
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 370 CGCGTGTTCTTCTGGTCGTACGCGTTTTACCTCTCAAGATTTCTTCACTTGTTCCGTACT 429
Query 433 TTCTTCTCCGTGATACGACGTCGTAAACTCAGCTTCTTCCAGCTTATCAACCAGTCTTCT 492
|||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||
Sbjct 430 TTCTTCTCCGTGATACGACGTCGTAAGCTCAGCTTCTTTCAGCTCATTAACCAGTCTTCT 489
Query 493 CTTCTCTGTATCTCCTTCCTCTGGCTCGAATATTCCCAATCCTTTCAGGTGGTAGCGATA 552
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 490 CTTCTCTGTATCTCCTTCCTCTGGCTCGAATATTCCCAATCCTTTCAGGTAGTAGCGATA 549
Query 553 CTATTAACGACCGTTTCGTACGCCGTTGTGTACGGTTACAGGTTCTGGACGGAGATTGGG 612
|| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 550 CTGTTAACGACCGTTTCGTACGCCGTTGTATACGGTTACAGATTCTGGACGGAGATCGGG 609
Query 613 TTGCGTGGCGCGTGTTTTCCGTTTGTCGGAAACTGTCAAGCCATTCTGTTAGGGTGTATG 672
|| |||||||||||||||||||| || | ||||||||||| |||||||||||||| |||
Sbjct 610 TTACGTGGCGCGTGTTTTCCGTTCGTTGTTAACTGTCAAGCAATTCTGTTAGGGTGCATG 669
Query 673 ACGGTTTGCCACGTAGGCGTACTCTGTATACACCTGGTCAAACGCGGCGGTTGTAACGGT 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 ACGGTTTGCCACGTAGGCGTACTCTGTATACACCTGGTCAAACGCGGCGGTTGTAACGGT 729
Query 733 ATCGGTGCTTGGTTGTTTAACTCTGTTCTTAACGCCGTTATCACGTTGCTCTACTTGAAG 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 ATCGGTGCTTGGTTGTTTAACTCTGTTCTTAACGCCGTTATCACGTTGCTCTACTTGAAG 789
Query 793 TTTTATTGCAAGACGCGTTCAATGATGA---CCAAGGCTAATCACAACACCACATAA 846
|||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 790 TTTTATTGCAAGACGCGTTCAATGATGATGACCAAGGCTGTTCACACCACCACATAA 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31298914857
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5